RNA–Protein interactions for RNA: ENST00000509092.5

PDGFRA-207, Transcript of platelet derived growth factor receptor alpha, humanhuman

TSL 1 (best)

Gene PDGFRA, Length 2,417 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PDGFRA-207ENST00000509092 TIAM1Q13009 1591 aa13.25□□□□□ -0.29
PDGFRA-207ENST00000509092 POLA1P09884 1462 aaPredicted RBP13.25□□□□□ -0.29
PDGFRA-207ENST00000509092 PRXQ9BXM0 1461 aa13.23□□□□□ -0.29
PDGFRA-207ENST00000509092 PNNQ9H307 717 aaKnown RBP13.23□□□□□ -0.29
PDGFRA-207ENST00000509092 RBM10P98175 930 aaKnown RBP13.23□□□□□ -0.29
PDGFRA-207ENST00000509092 POLR1AO95602 1720 aaPredicted RBP13.22□□□□□ -0.29
PDGFRA-207ENST00000509092 FRAT2O75474 233 aaPredicted RBP13.22□□□□□ -0.29
PDGFRA-207ENST00000509092 HSPA5P11021 654 aaKnown RBP13.22□□□□□ -0.29
PDGFRA-207ENST00000509092 L1TD1Q5T7N2 865 aaKnown RBP13.22□□□□□ -0.29
PDGFRA-207ENST00000509092 ABCA5Q8WWZ7 1642 aa13.22□□□□□ -0.29
PDGFRA-207ENST00000509092 AAMPQ13685 434 aa13.21□□□□□ -0.29
PDGFRA-207ENST00000509092 RAD54L2Q9Y4B4 1467 aa13.21□□□□□ -0.3
PDGFRA-207ENST00000509092 CLCN1P35523 988 aa13.2□□□□□ -0.3
PDGFRA-207ENST00000509092 CENPJQ9HC77 1338 aaPredicted RBP13.19□□□□□ -0.3
PDGFRA-207ENST00000509092 ARHGAP35Q9NRY4 1499 aa13.19□□□□□ -0.3
PDGFRA-207ENST00000509092 PHF23Q9BUL5 403 aaPredicted RBP13.19□□□□□ -0.3
PDGFRA-207ENST00000509092 NCOA1Q15788 1441 aa13.19□□□□□ -0.3
PDGFRA-207ENST00000509092 A0A0U1RQG5 324 aaPredicted RBP13.18□□□□□ -0.3
PDGFRA-207ENST00000509092 FGD1P98174 961 aa13.18□□□□□ -0.3
PDGFRA-207ENST00000509092 PHLDB1Q86UU1 1377 aa13.18□□□□□ -0.3
PDGFRA-207ENST00000509092 CCDC7Q96M83 1385 aa13.18□□□□□ -0.3
PDGFRA-207ENST00000509092 LRRC9Q6ZRR7 1453 aa13.17□□□□□ -0.3
PDGFRA-207ENST00000509092 SLC4A3P48751 1232 aa13.17□□□□□ -0.3
PDGFRA-207ENST00000509092 EXOC6Q8TAG9 804 aa13.17□□□□□ -0.3
PDGFRA-207ENST00000509092 SENP3Q9H4L4 574 aaPredicted RBP13.17□□□□□ -0.3
PDGFRA-207ENST00000509092 RRP1P56182 461 aaKnown RBP13.16□□□□□ -0.3
PDGFRA-207ENST00000509092 CALD1Q05682 793 aaKnown RBP13.16□□□□□ -0.3
PDGFRA-207ENST00000509092 TARBP1Q13395 1621 aaKnown RBP13.16□□□□□ -0.3
PDGFRA-207ENST00000509092 EIF4G2P78344 907 aaKnown RBP eCLIP13.15□□□□□ -0.3
PDGFRA-207ENST00000509092 FAM50AQ14320 339 aaKnown RBP13.15□□□□□ -0.3
PDGFRA-207ENST00000509092 ABCA10Q8WWZ4 1543 aa13.15□□□□□ -0.3
PDGFRA-207ENST00000509092 UACAQ9BZF9 1416 aa13.15□□□□□ -0.3
PDGFRA-207ENST00000509092 CFAP43Q8NDM7 1665 aa13.14□□□□□ -0.31
PDGFRA-207ENST00000509092 CCDC18Q5T9S5 1454 aa13.13□□□□□ -0.31
PDGFRA-207ENST00000509092 KIF27Q86VH2 1401 aa13.13□□□□□ -0.31
PDGFRA-207ENST00000509092 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP13.12□□□□□ -0.31
PDGFRA-207ENST00000509092 PDCL3Q9H2J4 239 aa13.12□□□□□ -0.31
PDGFRA-207ENST00000509092 PRDM4Q9UKN5 801 aa13.12□□□□□ -0.31
PDGFRA-207ENST00000509092 IFT140Q96RY7 1462 aa13.12□□□□□ -0.31
PDGFRA-207ENST00000509092 POGKQ9P215 609 aa13.11□□□□□ -0.31
PDGFRA-207ENST00000509092 PDE4CQ08493 712 aa13.1□□□□□ -0.31
PDGFRA-207ENST00000509092 TDRD9Q8NDG6 1382 aaKnown RBP13.1□□□□□ -0.31
PDGFRA-207ENST00000509092 TPM2P07951 284 aa13.09□□□□□ -0.31
PDGFRA-207ENST00000509092 PTPN23Q9H3S7 1636 aa13.08□□□□□ -0.32
PDGFRA-207ENST00000509092 ZNF608Q9ULD9 1512 aaPredicted RBP13.07□□□□□ -0.32
PDGFRA-207ENST00000509092 VIRMAQ69YN4 1812 aaKnown RBP13.05□□□□□ -0.32
PDGFRA-207ENST00000509092 AQRO60306 1485 aaKnown RBP eCLIP13.05□□□□□ -0.32
PDGFRA-207ENST00000509092 GAPVD1Q14C86 1478 aa13.05□□□□□ -0.32
PDGFRA-207ENST00000509092 HFM1A2PYH4 1435 aa13.05□□□□□ -0.32
PDGFRA-207ENST00000509092 RCAN3Q9UKA8 241 aa13.05□□□□□ -0.32
PDGFRA-207ENST00000509092 XRCC6P12956 609 aaKnown RBP eCLIP13.04□□□□□ -0.32
PDGFRA-207ENST00000509092 FAM161AQ3B820 660 aa13.04□□□□□ -0.32
PDGFRA-207ENST00000509092 IGF1RP08069 1367 aa13.04□□□□□ -0.32
PDGFRA-207ENST00000509092 FSD2A1L4K1 749 aa13.03□□□□□ -0.32
PDGFRA-207ENST00000509092 EIF4G3O43432 1585 aaKnown RBP13.02□□□□□ -0.32
PDGFRA-207ENST00000509092 GOLGA6L3A6NEY3 463 aa13.02□□□□□ -0.32
PDGFRA-207ENST00000509092 KIF7Q2M1P5 1343 aa13.02□□□□□ -0.32
PDGFRA-207ENST00000509092 DHX29Q7Z478 1369 aaKnown RBP13.02□□□□□ -0.32
PDGFRA-207ENST00000509092 RGS3P49796 1198 aa13.01□□□□□ -0.33
PDGFRA-207ENST00000509092 KTN1Q86UP2 1357 aaKnown RBP13.01□□□□□ -0.33
PDGFRA-207ENST00000509092 PBRM1Q86U86 1689 aa13.01□□□□□ -0.33
PDGFRA-207ENST00000509092 C8orf34Q49A92 452 aa13.01□□□□□ -0.33
PDGFRA-207ENST00000509092 PNISRQ8TF01 805 aaKnown RBP13.01□□□□□ -0.33
PDGFRA-207ENST00000509092 SKAP1Q86WV1 359 aa13□□□□□ -0.33
PDGFRA-207ENST00000509092 HECW1Q76N89 1606 aa12.99□□□□□ -0.33
PDGFRA-207ENST00000509092 LRPPRCP42704 1394 aaKnown RBP12.99□□□□□ -0.33
PDGFRA-207ENST00000509092 ESPNB1AK53 854 aa12.98□□□□□ -0.33
PDGFRA-207ENST00000509092 KDM2BQ8NHM5 1336 aa12.98□□□□□ -0.33
PDGFRA-207ENST00000509092 GRIN2BQ13224 1484 aa12.98□□□□□ -0.33
PDGFRA-207ENST00000509092 PANK2Q9BZ23 570 aa12.97□□□□□ -0.33
PDGFRA-207ENST00000509092 MYOM3Q5VTT5 1437 aa12.97□□□□□ -0.33
PDGFRA-207ENST00000509092 SPATA31E1Q6ZUB1 1445 aa12.97□□□□□ -0.33
PDGFRA-207ENST00000509092 CARMIL1Q5VZK9 1371 aa12.97□□□□□ -0.33
PDGFRA-207ENST00000509092 FMN1Q68DA7 1419 aa12.97□□□□□ -0.33
PDGFRA-207ENST00000509092 PCF11O94913 1555 aaKnown RBP12.96□□□□□ -0.33
PDGFRA-207ENST00000509092 CUL7Q14999 1698 aa12.96□□□□□ -0.33
PDGFRA-207ENST00000509092 NAIPQ13075 1403 aa12.96□□□□□ -0.34
PDGFRA-207ENST00000509092 PDE3BQ13370 1112 aa12.96□□□□□ -0.34
PDGFRA-207ENST00000509092 PDIA4P13667 645 aaKnown RBP12.95□□□□□ -0.34
PDGFRA-207ENST00000509092 CENPQQ7L2Z9 268 aaPredicted RBP12.94□□□□□ -0.34
PDGFRA-207ENST00000509092 CRBNQ96SW2 442 aa12.94□□□□□ -0.34
PDGFRA-207ENST00000509092 MAP7D2Q96T17 732 aa12.94□□□□□ -0.34
PDGFRA-207ENST00000509092 FGD6Q6ZV73 1430 aa12.94□□□□□ -0.34
PDGFRA-207ENST00000509092 MRE11P49959 708 aa12.94□□□□□ -0.34
PDGFRA-207ENST00000509092 SENP3-EIF4A1A0A087X0R7 540 aa12.93□□□□□ -0.34
PDGFRA-207ENST00000509092 ERBB4Q15303 1308 aa12.93□□□□□ -0.34
PDGFRA-207ENST00000509092 BECN1Q14457 450 aa12.93□□□□□ -0.34
PDGFRA-207ENST00000509092 SMAP1Q8IYB5 467 aaPredicted RBP12.93□□□□□ -0.34
PDGFRA-207ENST00000509092 TMC1Q8TDI8 760 aa12.93□□□□□ -0.34
PDGFRA-207ENST00000509092 SNAPC4Q5SXM2 1469 aa12.93□□□□□ -0.34
PDGFRA-207ENST00000509092 ARXQ96QS3 562 aa12.92□□□□□ -0.34
PDGFRA-207ENST00000509092 PTPRKQ15262 1439 aa12.92□□□□□ -0.34
PDGFRA-207ENST00000509092 ARID4BQ4LE39 1312 aaPredicted RBP12.92□□□□□ -0.34
PDGFRA-207ENST00000509092 ADAMTS12P58397 1594 aa12.91□□□□□ -0.34
PDGFRA-207ENST00000509092 MIA2Q96PC5 1412 aa12.91□□□□□ -0.34
PDGFRA-207ENST00000509092 BCL11BQ9C0K0 894 aaPredicted RBP12.91□□□□□ -0.34
PDGFRA-207ENST00000509092 MYH16Q9H6N6 1097 aa12.91□□□□□ -0.34
PDGFRA-207ENST00000509092 DENND4BO75064 1496 aaPredicted RBP12.91□□□□□ -0.34
PDGFRA-207ENST00000509092 GCC2Q8IWJ2 1684 aa12.91□□□□□ -0.34
PDGFRA-207ENST00000509092 BRD4O60885 1362 aaPredicted RBP12.9□□□□□ -0.34
Retrieved 100 of 20,778 RNA–protein pairs in 23.2 ms