RNA–Protein interactions for RNA: ENST00000509092.5

PDGFRA-207, Transcript of platelet derived growth factor receptor alpha, humanhuman

TSL 1 (best)

Gene PDGFRA, Length 2,417 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PDGFRA-207ENST00000509092 NISCHQ9Y2I1 1504 aa18.52■□□□□ 0.56
PDGFRA-207ENST00000509092 PELP1Q8IZL8 1130 aaKnown RBP17.35■□□□□ 0.37
PDGFRA-207ENST00000509092 HRCP23327 699 aa17.13■□□□□ 0.33
PDGFRA-207ENST00000509092 MYT1Q01538 1121 aa16.87■□□□□ 0.29
PDGFRA-207ENST00000509092 PPARGC1BQ86YN6 1023 aaKnown RBP16.6■□□□□ 0.25
PDGFRA-207ENST00000509092 PCGF6Q9BYE7 350 aa16.43■□□□□ 0.22
PDGFRA-207ENST00000509092 SCAF1Q9H7N4 1312 aaKnown RBP16.42■□□□□ 0.22
PDGFRA-207ENST00000509092 MYO15BQ96JP2 1530 aa16.28■□□□□ 0.2
PDGFRA-207ENST00000509092 CCDC180Q9P1Z9 1646 aa16.26■□□□□ 0.19
PDGFRA-207ENST00000509092 DCAF1Q9Y4B6 1507 aa16.11■□□□□ 0.17
PDGFRA-207ENST00000509092 TTBK1Q5TCY1 1321 aaPredicted RBP16.01■□□□□ 0.15
PDGFRA-207ENST00000509092 ZEB1P37275 1124 aaPredicted RBP16■□□□□ 0.15
PDGFRA-207ENST00000509092 CHIC1Q5VXU3 224 aa15.93■□□□□ 0.14
PDGFRA-207ENST00000509092 ACIN1Q9UKV3 1341 aaKnown RBP15.91■□□□□ 0.14
PDGFRA-207ENST00000509092 SUPT5HO00267 1087 aaKnown RBP15.9■□□□□ 0.14
PDGFRA-207ENST00000509092 TRIM26Q12899 539 aaPredicted RBP15.89■□□□□ 0.13
PDGFRA-207ENST00000509092 NEUROD1Q13562 356 aa15.78■□□□□ 0.12
PDGFRA-207ENST00000509092 SHROOM4Q9ULL8 1493 aa15.78■□□□□ 0.12
PDGFRA-207ENST00000509092 GTF3C3Q9Y5Q9 886 aa15.74■□□□□ 0.11
PDGFRA-207ENST00000509092 CENPBP07199 599 aaPredicted RBP15.66■□□□□ 0.1
PDGFRA-207ENST00000509092 ABCC9O60706 1549 aa15.57■□□□□ 0.08
PDGFRA-207ENST00000509092 BCL11AQ9H165 835 aa15.55■□□□□ 0.08
PDGFRA-207ENST00000509092 ZCCHC6Q5VYS8 1495 aaKnown RBP15.52■□□□□ 0.07
PDGFRA-207ENST00000509092 LOC105371045A0A1W2PR82 267 aa15.51■□□□□ 0.07
PDGFRA-207ENST00000509092 AEBP2Q6ZN18 517 aaPredicted RBP15.46■□□□□ 0.07
PDGFRA-207ENST00000509092 FAM9AQ8IZU1 332 aaPredicted RBP15.39■□□□□ 0.05
PDGFRA-207ENST00000509092 DCAF8L2P0C7V8 631 aa15.38■□□□□ 0.05
PDGFRA-207ENST00000509092 DIEXFQ68CQ4 756 aaKnown RBP15.35■□□□□ 0.05
PDGFRA-207ENST00000509092 PRKCSHP14314 528 aaPredicted RBP15.28■□□□□ 0.04
PDGFRA-207ENST00000509092 ANP32EQ9BTT0 268 aa15.28■□□□□ 0.04
PDGFRA-207ENST00000509092 NACADO15069 1562 aa15.19■□□□□ 0.02
PDGFRA-207ENST00000509092 TRIM41Q8WV44 630 aa15.12■□□□□ 0.01
PDGFRA-207ENST00000509092 RB1CC1Q8TDY2 1594 aa15.11■□□□□ 0.01
PDGFRA-207ENST00000509092 CCER1Q8TC90 406 aaPredicted RBP15.08■□□□□ 0.01
PDGFRA-207ENST00000509092 CSRNP3Q8WYN3 585 aa15.06■□□□□ 0
PDGFRA-207ENST00000509092 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP15.05■□□□□ 0
PDGFRA-207ENST00000509092 ERICH6Q7L0X2 663 aa15.05■□□□□ -0
PDGFRA-207ENST00000509092 YTHDC1Q96MU7 727 aaKnown RBP15.05■□□□□ -0
PDGFRA-207ENST00000509092 CLSPNQ9HAW4 1339 aa15.05■□□□□ -0
PDGFRA-207ENST00000509092 TSHZ2Q9NRE2 1034 aa14.98□□□□□ -0.01
PDGFRA-207ENST00000509092 ZNF316A6NFI3 1004 aaPredicted RBP14.98□□□□□ -0.01
PDGFRA-207ENST00000509092 SCRIBQ14160 1630 aa14.93□□□□□ -0.02
PDGFRA-207ENST00000509092 SUPT16HQ9Y5B9 1047 aaKnown RBP14.92□□□□□ -0.02
PDGFRA-207ENST00000509092 MIER1Q8N108 512 aa14.88□□□□□ -0.03
PDGFRA-207ENST00000509092 APLP2Q06481 763 aa14.88□□□□□ -0.03
PDGFRA-207ENST00000509092 UNC13AQ9UPW8 1703 aa14.85□□□□□ -0.03
PDGFRA-207ENST00000509092 BICRAQ9NZM4 1560 aa14.68□□□□□ -0.06
PDGFRA-207ENST00000509092 PABPN1Q86U42 306 aaKnown RBP eCLIP14.64□□□□□ -0.07
PDGFRA-207ENST00000509092 RBM19Q9Y4C8 960 aaKnown RBP14.57□□□□□ -0.08
PDGFRA-207ENST00000509092 MYT1LQ9UL68 1186 aa14.54□□□□□ -0.08
PDGFRA-207ENST00000509092 WRNQ14191 1432 aaPredicted RBP eCLIP14.54□□□□□ -0.08
PDGFRA-207ENST00000509092 EHMT2Q96KQ7 1210 aa14.53□□□□□ -0.08
PDGFRA-207ENST00000509092 MSH5O43196 834 aa14.48□□□□□ -0.09
PDGFRA-207ENST00000509092 ANO8Q9HCE9 1232 aaPredicted RBP14.47□□□□□ -0.09
PDGFRA-207ENST00000509092 CECR2Q9BXF3 1484 aa14.42□□□□□ -0.1
PDGFRA-207ENST00000509092 FANCIQ9NVI1 1328 aa14.41□□□□□ -0.1
PDGFRA-207ENST00000509092 BCANQ96GW7 911 aa14.41□□□□□ -0.1
PDGFRA-207ENST00000509092 DEKP35659 375 aaKnown RBP14.39□□□□□ -0.11
PDGFRA-207ENST00000509092 ERICH6BQ5W0A0 696 aa14.38□□□□□ -0.11
PDGFRA-207ENST00000509092 FKBP8Q14318 412 aa14.37□□□□□ -0.11
PDGFRA-207ENST00000509092 RSF1Q96T23 1441 aaPredicted RBP14.34□□□□□ -0.11
PDGFRA-207ENST00000509092 UBE2Q2Q8WVN8 375 aa14.33□□□□□ -0.12
PDGFRA-207ENST00000509092 BAZ1AQ9NRL2 1556 aaPredicted RBP14.32□□□□□ -0.12
PDGFRA-207ENST00000509092 MROH2BQ7Z745 1585 aa14.31□□□□□ -0.12
PDGFRA-207ENST00000509092 SMARCA4P51532 1647 aa14.29□□□□□ -0.12
PDGFRA-207ENST00000509092 SALL2Q9Y467 1007 aaPredicted RBP14.29□□□□□ -0.12
PDGFRA-207ENST00000509092 NEFLP07196 543 aa14.29□□□□□ -0.12
PDGFRA-207ENST00000509092 CEP162Q5TB80 1403 aa14.28□□□□□ -0.12
PDGFRA-207ENST00000509092 EIF4G1Q04637 1599 aaKnown RBP14.25□□□□□ -0.13
PDGFRA-207ENST00000509092 ITGAEP38570 1179 aa14.2□□□□□ -0.14
PDGFRA-207ENST00000509092 WIZO95785 1651 aa14.19□□□□□ -0.14
PDGFRA-207ENST00000509092 HNRNPUL2Q1KMD3 747 aaKnown RBP14.17□□□□□ -0.14
PDGFRA-207ENST00000509092 TNIKQ9UKE5 1360 aa14.16□□□□□ -0.14
PDGFRA-207ENST00000509092 CCDC136Q96JN2 1154 aa14.15□□□□□ -0.14
PDGFRA-207ENST00000509092 KCNH8Q96L42 1107 aa14.15□□□□□ -0.14
PDGFRA-207ENST00000509092 CDK11AQ9UQ88 783 aaPredicted RBP14.15□□□□□ -0.14
PDGFRA-207ENST00000509092 PEG3Q9GZU2 1588 aa14.12□□□□□ -0.15
PDGFRA-207ENST00000509092 ATAD2BQ9ULI0 1458 aa14.11□□□□□ -0.15
PDGFRA-207ENST00000509092 CC2D2AQ9P2K1 1620 aa14.1□□□□□ -0.15
PDGFRA-207ENST00000509092 SMARCA2P51531 1590 aa14.09□□□□□ -0.15
PDGFRA-207ENST00000509092 DHX57Q6P158 1386 aaKnown RBP14.07□□□□□ -0.16
PDGFRA-207ENST00000509092 NOP58Q9Y2X3 529 aaKnown RBP14.04□□□□□ -0.16
PDGFRA-207ENST00000509092 IL27Q8NEV9 243 aa14.02□□□□□ -0.16
PDGFRA-207ENST00000509092 ZBTB4Q9P1Z0 1013 aaPredicted RBP14.02□□□□□ -0.16
PDGFRA-207ENST00000509092 TOP2AP11388 1531 aaKnown RBP14.02□□□□□ -0.17
PDGFRA-207ENST00000509092 NBR1Q14596 966 aa14.02□□□□□ -0.17
PDGFRA-207ENST00000509092 NCAPD3P42695 1498 aa14.02□□□□□ -0.17
PDGFRA-207ENST00000509092 BAZ1BQ9UIG0 1483 aaKnown RBP14.02□□□□□ -0.17
PDGFRA-207ENST00000509092 HMGXB3Q12766 1538 aa13.98□□□□□ -0.17
PDGFRA-207ENST00000509092 CCER2I3L3R5 266 aa13.96□□□□□ -0.17
PDGFRA-207ENST00000509092 EIF5BO60841 1220 aaKnown RBP13.96□□□□□ -0.17
PDGFRA-207ENST00000509092 RTL5Q5HYW3 569 aaPredicted RBP13.96□□□□□ -0.17
PDGFRA-207ENST00000509092 ABCC8Q09428 1581 aa13.96□□□□□ -0.18
PDGFRA-207ENST00000509092 EEA1Q15075 1411 aa13.95□□□□□ -0.18
PDGFRA-207ENST00000509092 RTN4Q9NQC3 1192 aaKnown RBP13.94□□□□□ -0.18
PDGFRA-207ENST00000509092 DNAJC5BQ9UF47 199 aa13.94□□□□□ -0.18
PDGFRA-207ENST00000509092 TRIM52Q96A61 297 aa13.93□□□□□ -0.18
PDGFRA-207ENST00000509092 GOLGA3Q08378 1498 aa13.93□□□□□ -0.18
PDGFRA-207ENST00000509092 PKNOX2Q96KN3 472 aa13.93□□□□□ -0.18
PDGFRA-207ENST00000509092 PAK3O75914 559 aaPredicted RBP13.92□□□□□ -0.18
Retrieved 100 of 20,778 RNA–protein pairs in 46.8 ms