RNA–Protein interactions for RNA: ENST00000485867.5

SMC4-217, Transcript of structural maintenance of chromosomes 4, humanhuman

TSL 3

Gene SMC4, Length 629 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMC4-217ENST00000485867 FAM163AQ96GL9 167 aaPredicted RBP13.13□□□□□ -0.31
SMC4-217ENST00000485867 FANCD2Q9BXW9 1451 aa13.12□□□□□ -0.31
SMC4-217ENST00000485867 POTEGQ6S5H5 508 aa13.12□□□□□ -0.31
SMC4-217ENST00000485867 ARHGEF11O15085 1522 aa13.11□□□□□ -0.31
SMC4-217ENST00000485867 L3MBTL3Q96JM7 780 aaPredicted RBP13.1□□□□□ -0.31
SMC4-217ENST00000485867 EIF2AK3Q9NZJ5 1116 aaKnown RBP13.09□□□□□ -0.31
SMC4-217ENST00000485867 VGFO15240 615 aaPredicted RBP13.07□□□□□ -0.32
SMC4-217ENST00000485867 DPY19L2Q6NUT2 758 aa13.07□□□□□ -0.32
SMC4-217ENST00000485867 URB2Q14146 1524 aaKnown RBP13.07□□□□□ -0.32
SMC4-217ENST00000485867 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP13.06□□□□□ -0.32
SMC4-217ENST00000485867 EFCAB3Q8N7B9 438 aa13.06□□□□□ -0.32
SMC4-217ENST00000485867 ZFP91Q96JP5 570 aaPredicted RBP13.06□□□□□ -0.32
SMC4-217ENST00000485867 WIZO95785 1651 aa13.05□□□□□ -0.32
SMC4-217ENST00000485867 C3orf67Q6ZVT6 689 aa13.03□□□□□ -0.32
SMC4-217ENST00000485867 CFTRP13569 1480 aa13.02□□□□□ -0.33
SMC4-217ENST00000485867 PKD2Q13563 968 aa13□□□□□ -0.33
SMC4-217ENST00000485867 ECM2O94769 699 aaPredicted RBP12.98□□□□□ -0.33
SMC4-217ENST00000485867 BOLA1Q9Y3E2 137 aa12.98□□□□□ -0.33
SMC4-217ENST00000485867 ST18O60284 1047 aa12.97□□□□□ -0.33
SMC4-217ENST00000485867 ZNF608Q9ULD9 1512 aaPredicted RBP12.97□□□□□ -0.33
SMC4-217ENST00000485867 CYB5RLQ6IPT4 315 aa12.96□□□□□ -0.33
SMC4-217ENST00000485867 ARAP1Q96P48 1450 aa12.96□□□□□ -0.34
SMC4-217ENST00000485867 PRDM2Q13029 1718 aa12.96□□□□□ -0.34
SMC4-217ENST00000485867 SOX12O15370 315 aa12.95□□□□□ -0.34
SMC4-217ENST00000485867 TAOK2Q9UL54 1235 aa12.94□□□□□ -0.34
SMC4-217ENST00000485867 IFT140Q96RY7 1462 aa12.93□□□□□ -0.34
SMC4-217ENST00000485867 SNPHO15079 494 aa12.93□□□□□ -0.34
SMC4-217ENST00000485867 TMEM121BQ9BXQ6 578 aaPredicted RBP12.93□□□□□ -0.34
SMC4-217ENST00000485867 PCDH10Q9P2E7 1040 aa12.93□□□□□ -0.34
SMC4-217ENST00000485867 CHD1O14646 1710 aa12.93□□□□□ -0.34
SMC4-217ENST00000485867 G3V3G9 751 aa12.92□□□□□ -0.34
SMC4-217ENST00000485867 BCL11BQ9C0K0 894 aaPredicted RBP12.92□□□□□ -0.34
SMC4-217ENST00000485867 EIF4G3O43432 1585 aaKnown RBP12.91□□□□□ -0.34
SMC4-217ENST00000485867 MS4A4AQ96JQ5 239 aa12.91□□□□□ -0.34
SMC4-217ENST00000485867 RGL2O15211 777 aa12.9□□□□□ -0.34
SMC4-217ENST00000485867 PHF8Q9UPP1 1060 aa12.9□□□□□ -0.34
SMC4-217ENST00000485867 STK24Q9Y6E0 443 aa12.87□□□□□ -0.35
SMC4-217ENST00000485867 PLSCR2Q9NRY7 297 aa12.86□□□□□ -0.35
SMC4-217ENST00000485867 RSF1Q96T23 1441 aaPredicted RBP12.86□□□□□ -0.35
SMC4-217ENST00000485867 TOP2AP11388 1531 aaKnown RBP12.85□□□□□ -0.35
SMC4-217ENST00000485867 STK25O00506 426 aa12.85□□□□□ -0.35
SMC4-217ENST00000485867 MICALL2Q8IY33 904 aa12.85□□□□□ -0.35
SMC4-217ENST00000485867 TOPBP1Q92547 1522 aa12.84□□□□□ -0.35
SMC4-217ENST00000485867 FBXO22Q8NEZ5 403 aa12.83□□□□□ -0.36
SMC4-217ENST00000485867 NLRP6P59044 892 aa12.81□□□□□ -0.36
SMC4-217ENST00000485867 MFRPQ9BY79 579 aa12.8□□□□□ -0.36
SMC4-217ENST00000485867 TARBP1Q13395 1621 aaKnown RBP12.78□□□□□ -0.36
SMC4-217ENST00000485867 CDAN1Q8IWY9 1227 aa12.78□□□□□ -0.36
SMC4-217ENST00000485867 HOXB3P14651 431 aaPredicted RBP12.77□□□□□ -0.37
SMC4-217ENST00000485867 TMEM92Q6UXU6 159 aa12.77□□□□□ -0.37
SMC4-217ENST00000485867 MARVELD3Q96A59 401 aa12.77□□□□□ -0.37
SMC4-217ENST00000485867 AQRO60306 1485 aaKnown RBP eCLIP12.77□□□□□ -0.372e-8■■■■■ 40.2
SMC4-217ENST00000485867 DNMBPQ6XZF7 1577 aa12.76□□□□□ -0.37
SMC4-217ENST00000485867 ABCC8Q09428 1581 aa12.75□□□□□ -0.37
SMC4-217ENST00000485867 CLASP1Q7Z460 1538 aa12.74□□□□□ -0.37
SMC4-217ENST00000485867 EMP3P54852 163 aa12.69□□□□□ -0.38
SMC4-217ENST00000485867 CCDC88BA6NC98 1476 aa12.68□□□□□ -0.38
SMC4-217ENST00000485867 POLA1P09884 1462 aaPredicted RBP12.67□□□□□ -0.38
SMC4-217ENST00000485867 DOK7Q18PE1 504 aa12.67□□□□□ -0.38
SMC4-217ENST00000485867 SYNJ1O43426 1573 aa12.67□□□□□ -0.38
SMC4-217ENST00000485867 SNAPC4Q5SXM2 1469 aa12.65□□□□□ -0.38
SMC4-217ENST00000485867 HS6ST3Q8IZP7 471 aa12.64□□□□□ -0.39
SMC4-217ENST00000485867 ZNF710Q8N1W2 664 aa12.64□□□□□ -0.39
SMC4-217ENST00000485867 POTEB3A0JP26 581 aa12.63□□□□□ -0.39
SMC4-217ENST00000485867 HOXB1P14653 301 aaPredicted RBP12.63□□□□□ -0.39
SMC4-217ENST00000485867 POTEBQ6S5H4 581 aa12.63□□□□□ -0.39
SMC4-217ENST00000485867 RAD54L2Q9Y4B4 1467 aa12.62□□□□□ -0.39
SMC4-217ENST00000485867 WDR97A6NE52 1622 aa12.62□□□□□ -0.39
SMC4-217ENST00000485867 TDRD9Q8NDG6 1382 aaKnown RBP12.6□□□□□ -0.39
SMC4-217ENST00000485867 FAM205CA6NFA0 338 aa12.6□□□□□ -0.39
SMC4-217ENST00000485867 HS3ST6Q96QI5 342 aa12.6□□□□□ -0.39
SMC4-217ENST00000485867 GAPVD1Q14C86 1478 aa12.59□□□□□ -0.39
SMC4-217ENST00000485867 MAGI1Q96QZ7 1491 aaPredicted RBP12.59□□□□□ -0.39
SMC4-217ENST00000485867 RIMBP2O15034 1052 aa12.59□□□□□ -0.39
SMC4-217ENST00000485867 KIF3CO14782 793 aa12.58□□□□□ -0.4
SMC4-217ENST00000485867 PPP1R37O75864 691 aa12.58□□□□□ -0.4
SMC4-217ENST00000485867 SOGA1O94964 1423 aa12.57□□□□□ -0.4
SMC4-217ENST00000485867 ZSWIM6Q9HCJ5 1215 aa12.57□□□□□ -0.4
SMC4-217ENST00000485867 CHGAP10645 457 aaKnown RBP12.56□□□□□ -0.4
SMC4-217ENST00000485867 CHMP7Q8WUX9 453 aaPredicted RBP12.56□□□□□ -0.4
SMC4-217ENST00000485867 SYNJ2O15056 1496 aa12.55□□□□□ -0.4
SMC4-217ENST00000485867 C2orf72A6NCS6 295 aa12.54□□□□□ -0.4
SMC4-217ENST00000485867 GPR153Q6NV75 609 aa12.54□□□□□ -0.4
SMC4-217ENST00000485867 GRIN2BQ13224 1484 aa12.53□□□□□ -0.4
SMC4-217ENST00000485867 KIF13AQ9H1H9 1805 aa12.53□□□□□ -0.4
SMC4-217ENST00000485867 FGD5Q6ZNL6 1462 aa12.53□□□□□ -0.4
SMC4-217ENST00000485867 PBRM1Q86U86 1689 aa12.52□□□□□ -0.4
SMC4-217ENST00000485867 KRTAP3-3Q9BYR6 98 aa12.51□□□□□ -0.41
SMC4-217ENST00000485867 KRTAP3-2Q9BYR7 98 aa12.51□□□□□ -0.41
SMC4-217ENST00000485867 ERCC6L2Q5T890 1561 aa12.5□□□□□ -0.41
SMC4-217ENST00000485867 ERBB3P21860 1342 aa12.49□□□□□ -0.41
SMC4-217ENST00000485867 NKX1-1Q15270 411 aaPredicted RBP12.49□□□□□ -0.41
SMC4-217ENST00000485867 SPNS2Q8IVW8 549 aa12.48□□□□□ -0.41
SMC4-217ENST00000485867 ARSIQ5FYB1 569 aa12.46□□□□□ -0.41
SMC4-217ENST00000485867 TMC2Q8TDI7 906 aa12.46□□□□□ -0.41
SMC4-217ENST00000485867 CUX1P39880 1505 aa12.45□□□□□ -0.42
SMC4-217ENST00000485867 VARS2Q5ST30 1063 aaKnown RBP12.44□□□□□ -0.42
SMC4-217ENST00000485867 CEP170Q5SW79 1584 aa12.43□□□□□ -0.42
SMC4-217ENST00000485867 ABCA5Q8WWZ7 1642 aa12.42□□□□□ -0.42
SMC4-217ENST00000485867 KHSRPQ92945 711 aaKnown RBP eCLIP12.42□□□□□ -0.421e-6■□□□□ 9
Retrieved 100 of 20,778 RNA–protein pairs in 37.6 ms