RNA–Protein interactions for RNA: ENST00000485867.5

SMC4-217, Transcript of structural maintenance of chromosomes 4, humanhuman

TSL 3

Gene SMC4, Length 629 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMC4-217ENST00000485867 AEBP2Q6ZN18 517 aaPredicted RBP28.38■■■□□ 2.13
SMC4-217ENST00000485867 CHIC1Q5VXU3 224 aa27.11■■□□□ 1.93
SMC4-217ENST00000485867 SENP3Q9H4L4 574 aaPredicted RBP24.14■■□□□ 1.45
SMC4-217ENST00000485867 PHF23Q9BUL5 403 aaPredicted RBP23.86■■□□□ 1.41
SMC4-217ENST00000485867 FOXD1Q16676 465 aa22.49■■□□□ 1.19
SMC4-217ENST00000485867 PLPPR3Q6T4P5 718 aa21.73■■□□□ 1.07
SMC4-217ENST00000485867 PPP6R1Q9UPN7 881 aa21.19■□□□□ 0.98
SMC4-217ENST00000485867 ADRA2BP18089 450 aa21.11■□□□□ 0.97
SMC4-217ENST00000485867 PIAS4Q8N2W9 510 aaPredicted RBP21.04■□□□□ 0.96
SMC4-217ENST00000485867 MSH5O43196 834 aa20.96■□□□□ 0.95
SMC4-217ENST00000485867 POTEDQ86YR6 584 aa20.15■□□□□ 0.82
SMC4-217ENST00000485867 MAPK8IP2Q13387 824 aaPredicted RBP19.34■□□□□ 0.69
SMC4-217ENST00000485867 SCAF1Q9H7N4 1312 aaKnown RBP19.28■□□□□ 0.68
SMC4-217ENST00000485867 DMRT2Q9Y5R5 561 aa19.19■□□□□ 0.66
SMC4-217ENST00000485867 PPP4R3CPQ6ZMV5 832 aa19.07■□□□□ 0.64
SMC4-217ENST00000485867 CNKSR2Q8WXI2 1034 aa18.67■□□□□ 0.58
SMC4-217ENST00000485867 HOXD11P31277 338 aaPredicted RBP18.57■□□□□ 0.56
SMC4-217ENST00000485867 RNF216Q9NWF9 866 aaPredicted RBP18.47■□□□□ 0.55
SMC4-217ENST00000485867 NCBP3Q53F19 620 aaKnown RBP18.38■□□□□ 0.53
SMC4-217ENST00000485867 DCAF8L1A6NGE4 600 aa18.33■□□□□ 0.52
SMC4-217ENST00000485867 NPM3O75607 178 aaKnown RBP18.15■□□□□ 0.5
SMC4-217ENST00000485867 KCNA4P22459 653 aa17.97■□□□□ 0.47
SMC4-217ENST00000485867 RNF39Q9H2S5 420 aa17.92■□□□□ 0.46
SMC4-217ENST00000485867 DNAJC5BQ9UF47 199 aa17.9■□□□□ 0.46
SMC4-217ENST00000485867 CACNB1Q02641 598 aaPredicted RBP17.84■□□□□ 0.45
SMC4-217ENST00000485867 C1QBPQ07021 282 aaKnown RBP17.66■□□□□ 0.42
SMC4-217ENST00000485867 GRWD1Q9BQ67 446 aaKnown RBP eCLIP17.64■□□□□ 0.411e-7■■■■□ 24.4
SMC4-217ENST00000485867 U3KPZ7 1027 aaPredicted RBP17.33■□□□□ 0.36
SMC4-217ENST00000485867 SLC4A2P04920 1241 aa17.3■□□□□ 0.36
SMC4-217ENST00000485867 NISCHQ9Y2I1 1504 aa17.16■□□□□ 0.34
SMC4-217ENST00000485867 SPINK5Q9NQ38 1064 aaPredicted RBP17.02■□□□□ 0.32
SMC4-217ENST00000485867 SLC4A1APQ9BWU0 796 aaKnown RBP16.98■□□□□ 0.31
SMC4-217ENST00000485867 CAPN15O75808 1086 aa16.94■□□□□ 0.3
SMC4-217ENST00000485867 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP16.87■□□□□ 0.29
SMC4-217ENST00000485867 HNRNPUL2Q1KMD3 747 aaKnown RBP16.87■□□□□ 0.29
SMC4-217ENST00000485867 DSG3P32926 999 aa16.84■□□□□ 0.29
SMC4-217ENST00000485867 APLP2Q06481 763 aa16.82■□□□□ 0.28
SMC4-217ENST00000485867 SAMD1Q6SPF0 538 aaPredicted RBP16.79■□□□□ 0.28
SMC4-217ENST00000485867 MYCNP04198 464 aaPredicted RBP16.77■□□□□ 0.28
SMC4-217ENST00000485867 TRHP20396 242 aaPredicted RBP16.72■□□□□ 0.27
SMC4-217ENST00000485867 ZNF219Q9P2Y4 722 aaPredicted RBP16.71■□□□□ 0.27
SMC4-217ENST00000485867 FOXD4L1Q9NU39 408 aa16.69■□□□□ 0.26
SMC4-217ENST00000485867 ABCB7O75027 752 aa16.58■□□□□ 0.24
SMC4-217ENST00000485867 ZBTB22O15209 634 aa16.55■□□□□ 0.24
SMC4-217ENST00000485867 ATF5Q9Y2D1 282 aaPredicted RBP16.39■□□□□ 0.21
SMC4-217ENST00000485867 POLA2Q14181 598 aa16.33■□□□□ 0.2
SMC4-217ENST00000485867 ATXN8OSP0DMR3 200 aa16.17■□□□□ 0.18
SMC4-217ENST00000485867 RBM42Q9BTD8 480 aaKnown RBP16.04■□□□□ 0.16
SMC4-217ENST00000485867 ABCC9O60706 1549 aa16.04■□□□□ 0.16
SMC4-217ENST00000485867 ZBTB12Q9Y330 459 aaPredicted RBP16.01■□□□□ 0.15
SMC4-217ENST00000485867 CSRNP3Q8WYN3 585 aa15.94■□□□□ 0.14
SMC4-217ENST00000485867 POTEHQ6S545 545 aa15.82■□□□□ 0.12
SMC4-217ENST00000485867 OSCARQ8IYS5 282 aa15.81■□□□□ 0.12
SMC4-217ENST00000485867 EHMT2Q96KQ7 1210 aa15.8■□□□□ 0.12
SMC4-217ENST00000485867 AKT1S1Q96B36 256 aa15.72■□□□□ 0.11
SMC4-217ENST00000485867 FBLN2P98095 1184 aa15.69■□□□□ 0.1
SMC4-217ENST00000485867 CCDC180Q9P1Z9 1646 aa15.65■□□□□ 0.1
SMC4-217ENST00000485867 MKRN4PQ13434 485 aaPredicted RBP15.65■□□□□ 0.1
SMC4-217ENST00000485867 CHRDL2Q6WN34 429 aa15.63■□□□□ 0.09
SMC4-217ENST00000485867 REM2Q8IYK8 340 aaPredicted RBP15.58■□□□□ 0.08
SMC4-217ENST00000485867 SPDYE2BA6NHP3 402 aa15.55■□□□□ 0.08
SMC4-217ENST00000485867 SPDYE6P0CI01 402 aa15.55■□□□□ 0.08
SMC4-217ENST00000485867 SPDYE2Q495Y8 402 aa15.55■□□□□ 0.08
SMC4-217ENST00000485867 PITPNM1O00562 1244 aa15.42■□□□□ 0.06
SMC4-217ENST00000485867 SSUH2Q9Y2M2 353 aa15.38■□□□□ 0.05
SMC4-217ENST00000485867 ZNF692Q9BU19 519 aaPredicted RBP15.37■□□□□ 0.05
SMC4-217ENST00000485867 PIP4P2Q8N4L2 257 aa15.3■□□□□ 0.04
SMC4-217ENST00000485867 FXR2P51116 673 aaKnown RBP eCLIP15.26■□□□□ 0.033e-10■□□□□ 11
SMC4-217ENST00000485867 SPDYE1Q8NFV5 336 aaPredicted RBP15.22■□□□□ 0.03
SMC4-217ENST00000485867 PABPN1Q86U42 306 aaKnown RBP eCLIP15.16■□□□□ 0.02
SMC4-217ENST00000485867 CLEC11AQ9Y240 323 aa15.15■□□□□ 0.02
SMC4-217ENST00000485867 RB1CC1Q8TDY2 1594 aa15.08■□□□□ 0
SMC4-217ENST00000485867 PRKAR2AP13861 404 aaKnown RBP15□□□□□ -0.01
SMC4-217ENST00000485867 SPDYE4A6NLX3 237 aa14.97□□□□□ -0.01
SMC4-217ENST00000485867 HAX1O00165 279 aa14.94□□□□□ -0.02
SMC4-217ENST00000485867 PRR29P0C7W0 189 aa14.94□□□□□ -0.02
SMC4-217ENST00000485867 SP7Q8TDD2 431 aaPredicted RBP14.92□□□□□ -0.02
SMC4-217ENST00000485867 CHADLQ6NUI6 762 aa14.87□□□□□ -0.03
SMC4-217ENST00000485867 NACADO15069 1562 aa14.86□□□□□ -0.03
SMC4-217ENST00000485867 UNC13AQ9UPW8 1703 aa14.83□□□□□ -0.04
SMC4-217ENST00000485867 EVX2Q03828 476 aa14.82□□□□□ -0.04
SMC4-217ENST00000485867 STAG3Q9UJ98 1225 aa14.78□□□□□ -0.04
SMC4-217ENST00000485867 C19orf67A6NJJ6 358 aa14.76□□□□□ -0.05
SMC4-217ENST00000485867 PROM2Q8N271 834 aa14.7□□□□□ -0.06
SMC4-217ENST00000485867 BICRAQ9NZM4 1560 aa14.69□□□□□ -0.06
SMC4-217ENST00000485867 FARP1Q9Y4F1 1045 aaPredicted RBP14.68□□□□□ -0.06
SMC4-217ENST00000485867 CREBZFQ9NS37 354 aa14.66□□□□□ -0.06
SMC4-217ENST00000485867 DCAF8L2P0C7V8 631 aa14.56□□□□□ -0.08
SMC4-217ENST00000485867 CD44P16070 742 aaKnown RBP14.53□□□□□ -0.08
SMC4-217ENST00000485867 DNAJC5Q9H3Z4 198 aa14.51□□□□□ -0.09
SMC4-217ENST00000485867 MYO15BQ96JP2 1530 aa14.51□□□□□ -0.09
SMC4-217ENST00000485867 CC2D2AQ9P2K1 1620 aa14.5□□□□□ -0.09
SMC4-217ENST00000485867 CECR2Q9BXF3 1484 aa14.5□□□□□ -0.09
SMC4-217ENST00000485867 GABBR2O75899 941 aa14.47□□□□□ -0.09
SMC4-217ENST00000485867 MNX1P50219 401 aaPredicted RBP14.46□□□□□ -0.09
SMC4-217ENST00000485867 SHROOM4Q9ULL8 1493 aa14.43□□□□□ -0.1
SMC4-217ENST00000485867 FKBP8Q14318 412 aa14.41□□□□□ -0.1
SMC4-217ENST00000485867 NPM1P06748 294 aaKnown RBP eCLIP14.35□□□□□ -0.11
SMC4-217ENST00000485867 ZNF579Q8NAF0 562 aaKnown RBP14.35□□□□□ -0.11
SMC4-217ENST00000485867 ZRANB1Q9UGI0 708 aa14.35□□□□□ -0.11
Retrieved 100 of 20,778 RNA–protein pairs in 12.6 ms