RNA–Protein interactions for RNA: ENST00000461872.6

SYNE1-216, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 1 (best)

Gene SYNE1, Length 10,075 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-216ENST00000461872 CANXP27824 592 aaKnown RBP9.23□□□□□ -0.93
SYNE1-216ENST00000461872 FHOD3Q2V2M9 1422 aa9.22□□□□□ -0.93
SYNE1-216ENST00000461872 WDR43Q15061 677 aaKnown RBP eCLIP9.22□□□□□ -0.93
SYNE1-216ENST00000461872 NUDCQ9Y266 331 aa9.22□□□□□ -0.93
SYNE1-216ENST00000461872 NCOA2Q15596 1464 aa9.22□□□□□ -0.93
SYNE1-216ENST00000461872 ZNF326Q5BKZ1 582 aaKnown RBP9.22□□□□□ -0.93
SYNE1-216ENST00000461872 EIF3AQ14152 1382 aaKnown RBP9.21□□□□□ -0.93
SYNE1-216ENST00000461872 PTMSP20962 102 aa9.21□□□□□ -0.93
SYNE1-216ENST00000461872 CTTNBP2Q8WZ74 1663 aa9.21□□□□□ -0.93
SYNE1-216ENST00000461872 GAPVD1Q14C86 1478 aa9.21□□□□□ -0.94
SYNE1-216ENST00000461872 SIN3AQ96ST3 1273 aa9.2□□□□□ -0.94
SYNE1-216ENST00000461872 LAMC3Q9Y6N6 1575 aa9.2□□□□□ -0.94
SYNE1-216ENST00000461872 NLRP13Q86W25 1043 aa9.2□□□□□ -0.94
SYNE1-216ENST00000461872 HSPA5P11021 654 aaKnown RBP9.19□□□□□ -0.94
SYNE1-216ENST00000461872 MPHOSPH9Q99550 1183 aa9.19□□□□□ -0.94
SYNE1-216ENST00000461872 PLEKHH2Q8IVE3 1493 aa9.19□□□□□ -0.94
SYNE1-216ENST00000461872 IPO9Q96P70 1041 aaKnown RBP9.19□□□□□ -0.94
SYNE1-216ENST00000461872 BCL11AQ9H165 835 aa9.19□□□□□ -0.94
SYNE1-216ENST00000461872 PCF11O94913 1555 aaKnown RBP9.18□□□□□ -0.94
SYNE1-216ENST00000461872 PRKRIP1Q9H875 184 aaPredicted RBP9.18□□□□□ -0.94
SYNE1-216ENST00000461872 SCAPERQ9BY12 1400 aa9.18□□□□□ -0.94
SYNE1-216ENST00000461872 CARD11Q9BXL7 1154 aa9.18□□□□□ -0.94
SYNE1-216ENST00000461872 RRP7BPQ9NSQ0 103 aa9.18□□□□□ -0.94
SYNE1-216ENST00000461872 BRD4O60885 1362 aaPredicted RBP9.17□□□□□ -0.94
SYNE1-216ENST00000461872 KNSTRNQ9Y448 316 aa9.17□□□□□ -0.94
SYNE1-216ENST00000461872 CCDC7Q96M83 1385 aa9.16□□□□□ -0.94
SYNE1-216ENST00000461872 WDR97A6NE52 1622 aa9.16□□□□□ -0.94
SYNE1-216ENST00000461872 MYBBP1AQ9BQG0 1328 aaKnown RBP9.16□□□□□ -0.94
SYNE1-216ENST00000461872 PTPN23Q9H3S7 1636 aa9.16□□□□□ -0.94
SYNE1-216ENST00000461872 L1TD1Q5T7N2 865 aaKnown RBP9.16□□□□□ -0.94
SYNE1-216ENST00000461872 TOPBP1Q92547 1522 aa9.15□□□□□ -0.94
SYNE1-216ENST00000461872 CHIC2Q9UKJ5 165 aa9.15□□□□□ -0.94
SYNE1-216ENST00000461872 TMF1P82094 1093 aa9.15□□□□□ -0.94
SYNE1-216ENST00000461872 NINLQ9Y2I6 1382 aa9.14□□□□□ -0.95
SYNE1-216ENST00000461872 SMG6Q86US8 1419 aaKnown RBP9.14□□□□□ -0.95
SYNE1-216ENST00000461872 MAPKBP1O60336 1514 aa9.14□□□□□ -0.95
SYNE1-216ENST00000461872 CHMP7Q8WUX9 453 aaPredicted RBP9.14□□□□□ -0.95
SYNE1-216ENST00000461872 ITSN2Q9NZM3 1697 aa9.13□□□□□ -0.95
SYNE1-216ENST00000461872 CFAP53Q96M91 514 aa9.13□□□□□ -0.95
SYNE1-216ENST00000461872 NAIPQ13075 1403 aa9.13□□□□□ -0.95
SYNE1-216ENST00000461872 KANK1Q14678 1352 aa9.13□□□□□ -0.95
SYNE1-216ENST00000461872 INSRP06213 1382 aa9.13□□□□□ -0.95
SYNE1-216ENST00000461872 HAP1P54257 671 aaPredicted RBP9.13□□□□□ -0.95
SYNE1-216ENST00000461872 POLA1P09884 1462 aaPredicted RBP9.13□□□□□ -0.95
SYNE1-216ENST00000461872 USP47Q96K76 1375 aa9.12□□□□□ -0.95
SYNE1-216ENST00000461872 GRIN2BQ13224 1484 aa9.12□□□□□ -0.95
SYNE1-216ENST00000461872 GOLGA6L22H0YM25 854 aa9.12□□□□□ -0.95
SYNE1-216ENST00000461872 PNNQ9H307 717 aaKnown RBP9.12□□□□□ -0.95
SYNE1-216ENST00000461872 ZNF777Q9ULD5 760 aaPredicted RBP9.12□□□□□ -0.95
SYNE1-216ENST00000461872 IQGAP2Q13576 1575 aa9.12□□□□□ -0.95
SYNE1-216ENST00000461872 L3MBTL2Q969R5 705 aa9.11□□□□□ -0.95
SYNE1-216ENST00000461872 RCAN3Q9UKA8 241 aa9.11□□□□□ -0.95
SYNE1-216ENST00000461872 GCC2Q8IWJ2 1684 aa9.1□□□□□ -0.95
SYNE1-216ENST00000461872 MAPK8IP3Q9UPT6 1336 aa9.1□□□□□ -0.95
SYNE1-216ENST00000461872 TCOF1Q13428 1488 aaKnown RBP9.1□□□□□ -0.95
SYNE1-216ENST00000461872 ARHGEF12Q9NZN5 1544 aa9.1□□□□□ -0.95
SYNE1-216ENST00000461872 CCDC144AA2RUR9 1427 aa9.09□□□□□ -0.95
SYNE1-216ENST00000461872 DEKP35659 375 aaKnown RBP9.09□□□□□ -0.95
SYNE1-216ENST00000461872 RPRD2Q5VT52 1461 aaKnown RBP9.09□□□□□ -0.95
SYNE1-216ENST00000461872 NUP155O75694 1391 aa9.08□□□□□ -0.96
SYNE1-216ENST00000461872 NCOA1Q15788 1441 aa9.08□□□□□ -0.96
SYNE1-216ENST00000461872 KIAA1107Q9UPP5 1409 aa9.08□□□□□ -0.96
SYNE1-216ENST00000461872 CENPQQ7L2Z9 268 aaPredicted RBP9.08□□□□□ -0.96
SYNE1-216ENST00000461872 EPRSP07814 1512 aaKnown RBP9.07□□□□□ -0.96
SYNE1-216ENST00000461872 NPM2Q86SE8 214 aaKnown RBP9.07□□□□□ -0.96
SYNE1-216ENST00000461872 IFT140Q96RY7 1462 aa9.07□□□□□ -0.96
SYNE1-216ENST00000461872 UGGT2Q9NYU1 1516 aa9.07□□□□□ -0.96
SYNE1-216ENST00000461872 CGNL1Q0VF96 1302 aa9.07□□□□□ -0.96
SYNE1-216ENST00000461872 MYH16Q9H6N6 1097 aa9.06□□□□□ -0.96
SYNE1-216ENST00000461872 ZMYM4Q5VZL5 1548 aa9.06□□□□□ -0.96
SYNE1-216ENST00000461872 ISY1Q9ULR0 285 aaKnown RBP9.06□□□□□ -0.96
SYNE1-216ENST00000461872 TROQ12816 1431 aaPredicted RBP9.06□□□□□ -0.96
SYNE1-216ENST00000461872 NESP48681 1621 aa9.06□□□□□ -0.96
SYNE1-216ENST00000461872 HSP90AA1P07900 732 aaKnown RBP9.06□□□□□ -0.96
SYNE1-216ENST00000461872 ERCC6Q03468 1493 aa9.06□□□□□ -0.96
SYNE1-216ENST00000461872 KIAA0586Q9BVV6 1533 aa9.05□□□□□ -0.96
SYNE1-216ENST00000461872 PKD2Q13563 968 aa9.05□□□□□ -0.96
SYNE1-216ENST00000461872 NBR1Q14596 966 aa9.05□□□□□ -0.96
SYNE1-216ENST00000461872 ANKRD50Q9ULJ7 1429 aa9.05□□□□□ -0.96
SYNE1-216ENST00000461872 CCDC141Q6ZP82 1450 aa9.04□□□□□ -0.96
SYNE1-216ENST00000461872 B4GALNT3Q6L9W6 998 aa9.04□□□□□ -0.96
SYNE1-216ENST00000461872 SAMD9Q5K651 1589 aa9.04□□□□□ -0.96
SYNE1-216ENST00000461872 DAPK1P53355 1430 aa9.04□□□□□ -0.96
SYNE1-216ENST00000461872 SHANK2Q9UPX8 1470 aa9.03□□□□□ -0.96
SYNE1-216ENST00000461872 RSPH6AQ9H0K4 717 aa9.03□□□□□ -0.96
SYNE1-216ENST00000461872 TDRD9Q8NDG6 1382 aaKnown RBP9.03□□□□□ -0.96
SYNE1-216ENST00000461872 RRP1P56182 461 aaKnown RBP9.03□□□□□ -0.96
SYNE1-216ENST00000461872 KIF7Q2M1P5 1343 aa9.03□□□□□ -0.96
SYNE1-216ENST00000461872 PMFBP1Q8TBY8 1022 aa9.03□□□□□ -0.96
SYNE1-216ENST00000461872 TEX14Q8IWB6 1497 aa9.03□□□□□ -0.96
SYNE1-216ENST00000461872 CALD1Q05682 793 aaKnown RBP9.03□□□□□ -0.96
SYNE1-216ENST00000461872 EIF2AK4Q9P2K8 1649 aaKnown RBP9.02□□□□□ -0.97
SYNE1-216ENST00000461872 SNAPC4Q5SXM2 1469 aa9.02□□□□□ -0.97
SYNE1-216ENST00000461872 ANKRD30BQ9BXX2 1392 aa9.02□□□□□ -0.97
SYNE1-216ENST00000461872 MRC2Q9UBG0 1479 aa9.01□□□□□ -0.97
SYNE1-216ENST00000461872 HIRIP3Q9BW71 556 aaPredicted RBP9.01□□□□□ -0.97
SYNE1-216ENST00000461872 TRIM44Q96DX7 344 aaPredicted RBP9.01□□□□□ -0.97
SYNE1-216ENST00000461872 CASC1Q6TDU7 716 aa9.01□□□□□ -0.97
SYNE1-216ENST00000461872 NUP160Q12769 1436 aa9□□□□□ -0.97
SYNE1-216ENST00000461872 FBLN2P98095 1184 aa9□□□□□ -0.97
Retrieved 100 of 20,778 RNA–protein pairs in 34.5 ms