RNA–Protein interactions for RNA: ENST00000461574.1

BRCA1-206, Transcript of BRCA1, DNA repair associated, humanhuman

TSL 2

Gene BRCA1, Length 726 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
BRCA1-206ENST00000461574 MRC2Q9UBG0 1479 aa9.84□□□□□ -0.83
BRCA1-206ENST00000461574 SNPHO15079 494 aa9.83□□□□□ -0.84
BRCA1-206ENST00000461574 MROH2BQ7Z745 1585 aa9.83□□□□□ -0.84
BRCA1-206ENST00000461574 WDR62O43379 1518 aa9.82□□□□□ -0.84
BRCA1-206ENST00000461574 MARVELD3Q96A59 401 aa9.8□□□□□ -0.84
BRCA1-206ENST00000461574 TMEM121BQ9BXQ6 578 aaPredicted RBP9.8□□□□□ -0.84
BRCA1-206ENST00000461574 CADPSQ9ULU8 1353 aa9.79□□□□□ -0.84
BRCA1-206ENST00000461574 CEP164Q9UPV0 1460 aa9.78□□□□□ -0.84
BRCA1-206ENST00000461574 BOLA1Q9Y3E2 137 aa9.75□□□□□ -0.85
BRCA1-206ENST00000461574 WIZO95785 1651 aa9.74□□□□□ -0.85
BRCA1-206ENST00000461574 EFCAB3Q8N7B9 438 aa9.74□□□□□ -0.85
BRCA1-206ENST00000461574 G3V3G9 751 aa9.72□□□□□ -0.85
BRCA1-206ENST00000461574 RNF25Q96BH1 459 aaPredicted RBP9.72□□□□□ -0.85
BRCA1-206ENST00000461574 FANCD2Q9BXW9 1451 aa9.72□□□□□ -0.85
BRCA1-206ENST00000461574 RIOK3O14730 519 aaKnown RBP9.69□□□□□ -0.86
BRCA1-206ENST00000461574 EMP3P54852 163 aa9.69□□□□□ -0.86
BRCA1-206ENST00000461574 RIMBP3CA6NJZ7 1639 aa9.67□□□□□ -0.86
BRCA1-206ENST00000461574 RIMBP3BA6NNM3 1639 aa9.67□□□□□ -0.86
BRCA1-206ENST00000461574 RIMBP3Q9UFD9 1639 aa9.67□□□□□ -0.86
BRCA1-206ENST00000461574 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP9.66□□□□□ -0.86
BRCA1-206ENST00000461574 POTEB3A0JP26 581 aa9.66□□□□□ -0.86
BRCA1-206ENST00000461574 HOXB3P14651 431 aaPredicted RBP9.66□□□□□ -0.86
BRCA1-206ENST00000461574 POTEBQ6S5H4 581 aa9.66□□□□□ -0.86
BRCA1-206ENST00000461574 ZFP91Q96JP5 570 aaPredicted RBP9.66□□□□□ -0.86
BRCA1-206ENST00000461574 PRDM2Q13029 1718 aa9.65□□□□□ -0.86
BRCA1-206ENST00000461574 SPNS2Q8IVW8 549 aa9.65□□□□□ -0.86
BRCA1-206ENST00000461574 FAM205CA6NFA0 338 aa9.64□□□□□ -0.87
BRCA1-206ENST00000461574 HS3ST6Q96QI5 342 aa9.64□□□□□ -0.87
BRCA1-206ENST00000461574 CFTRP13569 1480 aa9.64□□□□□ -0.87
BRCA1-206ENST00000461574 URB2Q14146 1524 aaKnown RBP9.63□□□□□ -0.87
BRCA1-206ENST00000461574 VGFO15240 615 aaPredicted RBP9.63□□□□□ -0.87
BRCA1-206ENST00000461574 MMRN1Q13201 1228 aa9.62□□□□□ -0.87
BRCA1-206ENST00000461574 MS4A4AQ96JQ5 239 aa9.62□□□□□ -0.87
BRCA1-206ENST00000461574 SOX12O15370 315 aa9.61□□□□□ -0.87
BRCA1-206ENST00000461574 MICALL2Q8IY33 904 aa9.61□□□□□ -0.87
BRCA1-206ENST00000461574 TMEM92Q6UXU6 159 aa9.6□□□□□ -0.87
BRCA1-206ENST00000461574 PHF8Q9UPP1 1060 aa9.6□□□□□ -0.87
BRCA1-206ENST00000461574 KRTAP3-3Q9BYR6 98 aa9.59□□□□□ -0.87
BRCA1-206ENST00000461574 KRTAP3-2Q9BYR7 98 aa9.59□□□□□ -0.87
BRCA1-206ENST00000461574 ARHGEF11O15085 1522 aa9.59□□□□□ -0.87
BRCA1-206ENST00000461574 TOP2AP11388 1531 aaKnown RBP9.59□□□□□ -0.87
BRCA1-206ENST00000461574 ZNF710Q8N1W2 664 aa9.58□□□□□ -0.88
BRCA1-206ENST00000461574 HOXB1P14653 301 aaPredicted RBP9.57□□□□□ -0.88
BRCA1-206ENST00000461574 DOK7Q18PE1 504 aa9.57□□□□□ -0.88
BRCA1-206ENST00000461574 IFT140Q96RY7 1462 aa9.56□□□□□ -0.88
BRCA1-206ENST00000461574 EIF4G3O43432 1585 aaKnown RBP9.55□□□□□ -0.88
BRCA1-206ENST00000461574 CHD1O14646 1710 aa9.55□□□□□ -0.88
BRCA1-206ENST00000461574 ZNF608Q9ULD9 1512 aaPredicted RBP9.55□□□□□ -0.88
BRCA1-206ENST00000461574 BCL11BQ9C0K0 894 aaPredicted RBP9.54□□□□□ -0.88
BRCA1-206ENST00000461574 RSF1Q96T23 1441 aaPredicted RBP9.52□□□□□ -0.89
BRCA1-206ENST00000461574 CYB5RLQ6IPT4 315 aa9.51□□□□□ -0.89
BRCA1-206ENST00000461574 FBXO22Q8NEZ5 403 aa9.51□□□□□ -0.89
BRCA1-206ENST00000461574 STK24Q9Y6E0 443 aa9.51□□□□□ -0.89
BRCA1-206ENST00000461574 ERBB3P21860 1342 aa9.51□□□□□ -0.89
BRCA1-206ENST00000461574 TOPBP1Q92547 1522 aa9.51□□□□□ -0.89
BRCA1-206ENST00000461574 RIMBP2O15034 1052 aa9.5□□□□□ -0.89
BRCA1-206ENST00000461574 NLRP6P59044 892 aa9.5□□□□□ -0.89
BRCA1-206ENST00000461574 TAOK2Q9UL54 1235 aa9.49□□□□□ -0.89
BRCA1-206ENST00000461574 ABCC8Q09428 1581 aa9.49□□□□□ -0.89
BRCA1-206ENST00000461574 ECM2O94769 699 aaPredicted RBP9.48□□□□□ -0.89
BRCA1-206ENST00000461574 DNMBPQ6XZF7 1577 aa9.48□□□□□ -0.89
BRCA1-206ENST00000461574 STK25O00506 426 aa9.47□□□□□ -0.89
BRCA1-206ENST00000461574 MFRPQ9BY79 579 aa9.47□□□□□ -0.89
BRCA1-206ENST00000461574 ARAP1Q96P48 1450 aa9.47□□□□□ -0.89
BRCA1-206ENST00000461574 VARS2Q5ST30 1063 aaKnown RBP9.46□□□□□ -0.9
BRCA1-206ENST00000461574 GPR153Q6NV75 609 aa9.46□□□□□ -0.9
BRCA1-206ENST00000461574 ZSWIM6Q9HCJ5 1215 aa9.46□□□□□ -0.9
BRCA1-206ENST00000461574 PKD2Q13563 968 aa9.45□□□□□ -0.9
BRCA1-206ENST00000461574 CCDC88BA6NC98 1476 aa9.45□□□□□ -0.9
BRCA1-206ENST00000461574 TARBP1Q13395 1621 aaKnown RBP9.45□□□□□ -0.9
BRCA1-206ENST00000461574 AQRO60306 1485 aaKnown RBP eCLIP9.44□□□□□ -0.9
BRCA1-206ENST00000461574 RGL2O15211 777 aa9.43□□□□□ -0.9
BRCA1-206ENST00000461574 ARSIQ5FYB1 569 aa9.41□□□□□ -0.9
BRCA1-206ENST00000461574 KHSRPQ92945 711 aaKnown RBP eCLIP9.39□□□□□ -0.914e-9■■■□□ 15.2
BRCA1-206ENST00000461574 POLA1P09884 1462 aaPredicted RBP9.39□□□□□ -0.91
BRCA1-206ENST00000461574 SYNJ1O43426 1573 aa9.38□□□□□ -0.91
BRCA1-206ENST00000461574 ZNF687Q8N1G0 1237 aa9.38□□□□□ -0.91
BRCA1-206ENST00000461574 SNAPC4Q5SXM2 1469 aa9.37□□□□□ -0.91
BRCA1-206ENST00000461574 C2orf72A6NCS6 295 aa9.37□□□□□ -0.91
BRCA1-206ENST00000461574 KIF3CO14782 793 aa9.37□□□□□ -0.91
BRCA1-206ENST00000461574 CLASP1Q7Z460 1538 aa9.36□□□□□ -0.91
BRCA1-206ENST00000461574 WDR97A6NE52 1622 aa9.36□□□□□ -0.91
BRCA1-206ENST00000461574 RAD54L2Q9Y4B4 1467 aa9.35□□□□□ -0.91
BRCA1-206ENST00000461574 SOGA1O94964 1423 aa9.34□□□□□ -0.91
BRCA1-206ENST00000461574 CHMP7Q8WUX9 453 aaPredicted RBP9.34□□□□□ -0.91
BRCA1-206ENST00000461574 TDRD9Q8NDG6 1382 aaKnown RBP9.34□□□□□ -0.91
BRCA1-206ENST00000461574 MAGI1Q96QZ7 1491 aaPredicted RBP9.33□□□□□ -0.92
BRCA1-206ENST00000461574 PBRM1Q86U86 1689 aa9.32□□□□□ -0.92
BRCA1-206ENST00000461574 ZNF316A6NFI3 1004 aaPredicted RBP9.32□□□□□ -0.92
BRCA1-206ENST00000461574 PPP1R37O75864 691 aa9.32□□□□□ -0.92
BRCA1-206ENST00000461574 FGD5Q6ZNL6 1462 aa9.32□□□□□ -0.92
BRCA1-206ENST00000461574 GRIN2BQ13224 1484 aa9.3□□□□□ -0.92
BRCA1-206ENST00000461574 RNF166Q96A37 237 aaPredicted RBP9.3□□□□□ -0.92
BRCA1-206ENST00000461574 SYNJ2O15056 1496 aa9.29□□□□□ -0.92
BRCA1-206ENST00000461574 NUDT7P0C024 238 aa9.29□□□□□ -0.92
BRCA1-206ENST00000461574 MYT1LQ9UL68 1186 aa9.29□□□□□ -0.92
BRCA1-206ENST00000461574 GAPVD1Q14C86 1478 aa9.28□□□□□ -0.92
BRCA1-206ENST00000461574 TMC2Q8TDI7 906 aa9.28□□□□□ -0.92
BRCA1-206ENST00000461574 ANKRD13DQ6ZTN6 518 aa9.27□□□□□ -0.93
BRCA1-206ENST00000461574 PCDHGA4Q9Y5G9 962 aa9.27□□□□□ -0.93
Retrieved 100 of 20,778 RNA–protein pairs in 35.6 ms