RNA–Protein interactions for RNA: ENST00000461574.1

BRCA1-206, Transcript of BRCA1, DNA repair associated, humanhuman

TSL 2

Gene BRCA1, Length 726 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
BRCA1-206ENST00000461574 AEBP2Q6ZN18 517 aaPredicted RBP21.66■■□□□ 1.06
BRCA1-206ENST00000461574 CHIC1Q5VXU3 224 aa20.49■□□□□ 0.87
BRCA1-206ENST00000461574 SENP3Q9H4L4 574 aaPredicted RBP18.42■□□□□ 0.54
BRCA1-206ENST00000461574 PHF23Q9BUL5 403 aaPredicted RBP18.21■□□□□ 0.51
BRCA1-206ENST00000461574 FOXD1Q16676 465 aa17.22■□□□□ 0.35
BRCA1-206ENST00000461574 PLPPR3Q6T4P5 718 aa16.33■□□□□ 0.2
BRCA1-206ENST00000461574 PPP6R1Q9UPN7 881 aa16.09■□□□□ 0.17
BRCA1-206ENST00000461574 MSH5O43196 834 aa16.08■□□□□ 0.16
BRCA1-206ENST00000461574 PIAS4Q8N2W9 510 aaPredicted RBP16.07■□□□□ 0.16
BRCA1-206ENST00000461574 ADRA2BP18089 450 aa16.03■□□□□ 0.16
BRCA1-206ENST00000461574 POTEDQ86YR6 584 aa15.81■□□□□ 0.12
BRCA1-206ENST00000461574 MAPK8IP2Q13387 824 aaPredicted RBP14.75□□□□□ -0.05
BRCA1-206ENST00000461574 DMRT2Q9Y5R5 561 aa14.62□□□□□ -0.07
BRCA1-206ENST00000461574 SCAF1Q9H7N4 1312 aaKnown RBP14.6□□□□□ -0.07
BRCA1-206ENST00000461574 PPP4R3CPQ6ZMV5 832 aa14.33□□□□□ -0.12
BRCA1-206ENST00000461574 HOXD11P31277 338 aaPredicted RBP14.06□□□□□ -0.16
BRCA1-206ENST00000461574 CNKSR2Q8WXI2 1034 aa14.05□□□□□ -0.16
BRCA1-206ENST00000461574 DCAF8L1A6NGE4 600 aa14.04□□□□□ -0.16
BRCA1-206ENST00000461574 RNF216Q9NWF9 866 aaPredicted RBP13.94□□□□□ -0.18
BRCA1-206ENST00000461574 CACNB1Q02641 598 aaPredicted RBP13.85□□□□□ -0.19
BRCA1-206ENST00000461574 RNF39Q9H2S5 420 aa13.74□□□□□ -0.21
BRCA1-206ENST00000461574 NCBP3Q53F19 620 aaKnown RBP13.73□□□□□ -0.21
BRCA1-206ENST00000461574 NPM3O75607 178 aaKnown RBP13.57□□□□□ -0.24
BRCA1-206ENST00000461574 DNAJC5BQ9UF47 199 aa13.54□□□□□ -0.24
BRCA1-206ENST00000461574 C1QBPQ07021 282 aaKnown RBP13.52□□□□□ -0.25
BRCA1-206ENST00000461574 GRWD1Q9BQ67 446 aaKnown RBP eCLIP13.4□□□□□ -0.26
BRCA1-206ENST00000461574 KCNA4P22459 653 aa13.29□□□□□ -0.28
BRCA1-206ENST00000461574 U3KPZ7 1027 aaPredicted RBP13.14□□□□□ -0.31
BRCA1-206ENST00000461574 SLC4A2P04920 1241 aa12.99□□□□□ -0.33
BRCA1-206ENST00000461574 SPINK5Q9NQ38 1064 aaPredicted RBP12.97□□□□□ -0.33
BRCA1-206ENST00000461574 CAPN15O75808 1086 aa12.92□□□□□ -0.34
BRCA1-206ENST00000461574 DSG3P32926 999 aa12.87□□□□□ -0.35
BRCA1-206ENST00000461574 NISCHQ9Y2I1 1504 aa12.76□□□□□ -0.37
BRCA1-206ENST00000461574 TRHP20396 242 aaPredicted RBP12.72□□□□□ -0.37
BRCA1-206ENST00000461574 APLP2Q06481 763 aa12.69□□□□□ -0.38
BRCA1-206ENST00000461574 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP12.68□□□□□ -0.38
BRCA1-206ENST00000461574 HNRNPUL2Q1KMD3 747 aaKnown RBP12.68□□□□□ -0.38
BRCA1-206ENST00000461574 ZNF219Q9P2Y4 722 aaPredicted RBP12.65□□□□□ -0.38
BRCA1-206ENST00000461574 ABCB7O75027 752 aa12.64□□□□□ -0.39
BRCA1-206ENST00000461574 SAMD1Q6SPF0 538 aaPredicted RBP12.63□□□□□ -0.39
BRCA1-206ENST00000461574 MYCNP04198 464 aaPredicted RBP12.53□□□□□ -0.4
BRCA1-206ENST00000461574 SLC4A1APQ9BWU0 796 aaKnown RBP12.52□□□□□ -0.41
BRCA1-206ENST00000461574 FOXD4L1Q9NU39 408 aa12.38□□□□□ -0.43
BRCA1-206ENST00000461574 POTEHQ6S545 545 aa12.37□□□□□ -0.43
BRCA1-206ENST00000461574 POLA2Q14181 598 aa12.36□□□□□ -0.43
BRCA1-206ENST00000461574 ATF5Q9Y2D1 282 aaPredicted RBP12.3□□□□□ -0.44
BRCA1-206ENST00000461574 ZBTB22O15209 634 aa12.24□□□□□ -0.45
BRCA1-206ENST00000461574 RBM42Q9BTD8 480 aaKnown RBP12.23□□□□□ -0.45
BRCA1-206ENST00000461574 ZBTB12Q9Y330 459 aaPredicted RBP12.05□□□□□ -0.48
BRCA1-206ENST00000461574 CHRDL2Q6WN34 429 aa12.02□□□□□ -0.49
BRCA1-206ENST00000461574 ATXN8OSP0DMR3 200 aa11.99□□□□□ -0.49
BRCA1-206ENST00000461574 OSCARQ8IYS5 282 aa11.98□□□□□ -0.49
BRCA1-206ENST00000461574 AKT1S1Q96B36 256 aa11.96□□□□□ -0.49
BRCA1-206ENST00000461574 REM2Q8IYK8 340 aaPredicted RBP11.88□□□□□ -0.51
BRCA1-206ENST00000461574 ABCC9O60706 1549 aa11.79□□□□□ -0.52
BRCA1-206ENST00000461574 FBLN2P98095 1184 aa11.76□□□□□ -0.53
BRCA1-206ENST00000461574 PITPNM1O00562 1244 aa11.75□□□□□ -0.53
BRCA1-206ENST00000461574 PIP4P2Q8N4L2 257 aa11.73□□□□□ -0.53
BRCA1-206ENST00000461574 MKRN4PQ13434 485 aaPredicted RBP11.72□□□□□ -0.53
BRCA1-206ENST00000461574 SPDYE2BA6NHP3 402 aa11.7□□□□□ -0.54
BRCA1-206ENST00000461574 SPDYE6P0CI01 402 aa11.7□□□□□ -0.54
BRCA1-206ENST00000461574 SPDYE2Q495Y8 402 aa11.7□□□□□ -0.54
BRCA1-206ENST00000461574 FXR2P51116 673 aaKnown RBP eCLIP11.65□□□□□ -0.54
BRCA1-206ENST00000461574 CCDC180Q9P1Z9 1646 aa11.62□□□□□ -0.55
BRCA1-206ENST00000461574 CSRNP3Q8WYN3 585 aa11.62□□□□□ -0.55
BRCA1-206ENST00000461574 SP7Q8TDD2 431 aaPredicted RBP11.58□□□□□ -0.56
BRCA1-206ENST00000461574 ZNF692Q9BU19 519 aaPredicted RBP11.58□□□□□ -0.56
BRCA1-206ENST00000461574 SSUH2Q9Y2M2 353 aa11.56□□□□□ -0.56
BRCA1-206ENST00000461574 HAX1O00165 279 aa11.53□□□□□ -0.56
BRCA1-206ENST00000461574 CLEC11AQ9Y240 323 aa11.52□□□□□ -0.57
BRCA1-206ENST00000461574 SPDYE1Q8NFV5 336 aaPredicted RBP11.51□□□□□ -0.57
BRCA1-206ENST00000461574 EHMT2Q96KQ7 1210 aa11.45□□□□□ -0.58
BRCA1-206ENST00000461574 PRKAR2AP13861 404 aaKnown RBP11.44□□□□□ -0.58
BRCA1-206ENST00000461574 EVX2Q03828 476 aa11.42□□□□□ -0.58
BRCA1-206ENST00000461574 PABPN1Q86U42 306 aaKnown RBP eCLIP11.41□□□□□ -0.58
BRCA1-206ENST00000461574 CHADLQ6NUI6 762 aa11.33□□□□□ -0.6
BRCA1-206ENST00000461574 PRR29P0C7W0 189 aa11.31□□□□□ -0.6
BRCA1-206ENST00000461574 C19orf67A6NJJ6 358 aa11.28□□□□□ -0.6
BRCA1-206ENST00000461574 RB1CC1Q8TDY2 1594 aa11.16□□□□□ -0.62
BRCA1-206ENST00000461574 GABBR2O75899 941 aa11.13□□□□□ -0.63
BRCA1-206ENST00000461574 FARP1Q9Y4F1 1045 aaPredicted RBP11.13□□□□□ -0.63
BRCA1-206ENST00000461574 SPDYE4A6NLX3 237 aa11.12□□□□□ -0.63
BRCA1-206ENST00000461574 CD44P16070 742 aaKnown RBP11.07□□□□□ -0.64
BRCA1-206ENST00000461574 CREBZFQ9NS37 354 aa11.04□□□□□ -0.64
BRCA1-206ENST00000461574 STAG3Q9UJ98 1225 aa11.04□□□□□ -0.64
BRCA1-206ENST00000461574 NACADO15069 1562 aa10.99□□□□□ -0.65
BRCA1-206ENST00000461574 UNC13AQ9UPW8 1703 aa10.93□□□□□ -0.66
BRCA1-206ENST00000461574 POTEIP0CG38 1075 aa10.92□□□□□ -0.66
BRCA1-206ENST00000461574 DCAF8L2P0C7V8 631 aa10.91□□□□□ -0.66
BRCA1-206ENST00000461574 ZRANB1Q9UGI0 708 aa10.91□□□□□ -0.66
BRCA1-206ENST00000461574 ZNF579Q8NAF0 562 aaKnown RBP10.89□□□□□ -0.67
BRCA1-206ENST00000461574 CLCN6P51797 869 aa10.87□□□□□ -0.67
BRCA1-206ENST00000461574 LHX8Q68G74 356 aa10.86□□□□□ -0.67
BRCA1-206ENST00000461574 MNX1P50219 401 aaPredicted RBP10.85□□□□□ -0.67
BRCA1-206ENST00000461574 PROM2Q8N271 834 aa10.84□□□□□ -0.67
BRCA1-206ENST00000461574 DCBLD2Q96PD2 775 aa10.8□□□□□ -0.68
BRCA1-206ENST00000461574 GALR2O43603 387 aaPredicted RBP10.79□□□□□ -0.68
BRCA1-206ENST00000461574 NPM1P06748 294 aaKnown RBP eCLIP10.79□□□□□ -0.68
BRCA1-206ENST00000461574 PAK3O75914 559 aaPredicted RBP10.78□□□□□ -0.68
BRCA1-206ENST00000461574 PHF12Q96QT6 1004 aa10.78□□□□□ -0.68
Retrieved 100 of 20,778 RNA–protein pairs in 26.5 ms