RNA–Protein interactions for RNA: ENST00000458707.1

VPS50-208, Transcript of VPS50, EARP/GARPII complex subunit, humanhuman

TSL 2

Gene VPS50, Length 1,898 nt, Biotype protein coding, Subcellular localisation Cytosol .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS50-208ENST00000458707 BCANQ96GW7 911 aa11.93□□□□□ -0.5
VPS50-208ENST00000458707 TOPBP1Q92547 1522 aa11.93□□□□□ -0.5
VPS50-208ENST00000458707 POLA1P09884 1462 aaPredicted RBP11.93□□□□□ -0.5
VPS50-208ENST00000458707 HECW1Q76N89 1606 aa11.93□□□□□ -0.5
VPS50-208ENST00000458707 TONSLQ96HA7 1378 aa11.93□□□□□ -0.5
VPS50-208ENST00000458707 ATXN8OSP0DMR3 200 aa11.91□□□□□ -0.5
VPS50-208ENST00000458707 PTPRKQ15262 1439 aa11.91□□□□□ -0.5
VPS50-208ENST00000458707 POLR1AO95602 1720 aaPredicted RBP11.91□□□□□ -0.5
VPS50-208ENST00000458707 RAD54L2Q9Y4B4 1467 aa11.91□□□□□ -0.5
VPS50-208ENST00000458707 NAIPQ13075 1403 aa11.91□□□□□ -0.5
VPS50-208ENST00000458707 EHBP1L1Q8N3D4 1523 aa11.9□□□□□ -0.5
VPS50-208ENST00000458707 ABCA5Q8WWZ7 1642 aa11.9□□□□□ -0.5
VPS50-208ENST00000458707 GRIN2BQ13224 1484 aa11.9□□□□□ -0.5
VPS50-208ENST00000458707 RBM19Q9Y4C8 960 aaKnown RBP11.9□□□□□ -0.5
VPS50-208ENST00000458707 ARHGEF11O15085 1522 aa11.9□□□□□ -0.5
VPS50-208ENST00000458707 MYOM3Q5VTT5 1437 aa11.89□□□□□ -0.51
VPS50-208ENST00000458707 P3H3Q8IVL6 736 aa11.89□□□□□ -0.51
VPS50-208ENST00000458707 NCOA2Q15596 1464 aa11.89□□□□□ -0.51
VPS50-208ENST00000458707 TRIM52Q96A61 297 aa11.88□□□□□ -0.51
VPS50-208ENST00000458707 HIRIP3Q9BW71 556 aaPredicted RBP11.88□□□□□ -0.51
VPS50-208ENST00000458707 UGGT2Q9NYU1 1516 aa11.88□□□□□ -0.51
VPS50-208ENST00000458707 PITPNM1O00562 1244 aa11.87□□□□□ -0.51
VPS50-208ENST00000458707 ZBTB22O15209 634 aa11.87□□□□□ -0.51
VPS50-208ENST00000458707 FXR2P51116 673 aaKnown RBP eCLIP11.87□□□□□ -0.51
VPS50-208ENST00000458707 MTUS2Q5JR59 1369 aa11.86□□□□□ -0.51
VPS50-208ENST00000458707 EIF5BO60841 1220 aaKnown RBP11.86□□□□□ -0.51
VPS50-208ENST00000458707 TCOF1Q13428 1488 aaKnown RBP11.86□□□□□ -0.51
VPS50-208ENST00000458707 ATP1B4Q9UN42 357 aaPredicted RBP11.85□□□□□ -0.51
VPS50-208ENST00000458707 AKNAQ7Z591 1439 aa11.85□□□□□ -0.51
VPS50-208ENST00000458707 DENND4BO75064 1496 aaPredicted RBP11.83□□□□□ -0.52
VPS50-208ENST00000458707 MAGI3Q5TCQ9 1506 aa11.81□□□□□ -0.52
VPS50-208ENST00000458707 LAMC3Q9Y6N6 1575 aa11.81□□□□□ -0.52
VPS50-208ENST00000458707 ERICH6BQ5W0A0 696 aa11.8□□□□□ -0.52
VPS50-208ENST00000458707 UBE2Q2Q8WVN8 375 aa11.8□□□□□ -0.52
VPS50-208ENST00000458707 KDM6BO15054 1643 aa11.8□□□□□ -0.52
VPS50-208ENST00000458707 URB2Q14146 1524 aaKnown RBP11.79□□□□□ -0.52
VPS50-208ENST00000458707 FANCIQ9NVI1 1328 aa11.79□□□□□ -0.52
VPS50-208ENST00000458707 CNTLNQ9NXG0 1405 aa11.79□□□□□ -0.52
VPS50-208ENST00000458707 WASHC2AQ641Q2 1341 aa11.78□□□□□ -0.52
VPS50-208ENST00000458707 SPDYE2BA6NHP3 402 aa11.78□□□□□ -0.52
VPS50-208ENST00000458707 SPDYE6P0CI01 402 aa11.78□□□□□ -0.52
VPS50-208ENST00000458707 SPDYE2Q495Y8 402 aa11.78□□□□□ -0.52
VPS50-208ENST00000458707 NESP48681 1621 aa11.77□□□□□ -0.53
VPS50-208ENST00000458707 GAPVD1Q14C86 1478 aa11.77□□□□□ -0.53
VPS50-208ENST00000458707 PBRM1Q86U86 1689 aa11.77□□□□□ -0.53
VPS50-208ENST00000458707 HNRNPUQ00839 825 aaKnown RBP eCLIP11.76□□□□□ -0.53
VPS50-208ENST00000458707 HAX1O00165 279 aa11.75□□□□□ -0.53
VPS50-208ENST00000458707 NCOA1Q15788 1441 aa11.75□□□□□ -0.53
VPS50-208ENST00000458707 MIA2Q96PC5 1412 aa11.75□□□□□ -0.53
VPS50-208ENST00000458707 HSPA5P11021 654 aaKnown RBP11.74□□□□□ -0.53
VPS50-208ENST00000458707 TARBP1Q13395 1621 aaKnown RBP11.74□□□□□ -0.53
VPS50-208ENST00000458707 FBLN2P98095 1184 aa11.74□□□□□ -0.53
VPS50-208ENST00000458707 EIF4G2P78344 907 aaKnown RBP eCLIP11.72□□□□□ -0.53
VPS50-208ENST00000458707 CDK11AQ9UQ88 783 aaPredicted RBP11.72□□□□□ -0.53
VPS50-208ENST00000458707 EPRSP07814 1512 aaKnown RBP11.72□□□□□ -0.53
VPS50-208ENST00000458707 DNMT1P26358 1616 aaKnown RBP11.72□□□□□ -0.53
VPS50-208ENST00000458707 WDR62O43379 1518 aa11.71□□□□□ -0.53
VPS50-208ENST00000458707 RPRD2Q5VT52 1461 aaKnown RBP11.71□□□□□ -0.54
VPS50-208ENST00000458707 TEX14Q8IWB6 1497 aa11.71□□□□□ -0.54
VPS50-208ENST00000458707 IQGAP2Q13576 1575 aa11.71□□□□□ -0.54
VPS50-208ENST00000458707 CCDC7Q96M83 1385 aa11.7□□□□□ -0.54
VPS50-208ENST00000458707 PPP4R2Q9NY27 417 aa11.7□□□□□ -0.54
VPS50-208ENST00000458707 TDRD9Q8NDG6 1382 aaKnown RBP11.69□□□□□ -0.54
VPS50-208ENST00000458707 ZBED9Q6R2W3 1325 aa11.69□□□□□ -0.54
VPS50-208ENST00000458707 ROCK1Q13464 1354 aa11.68□□□□□ -0.54
VPS50-208ENST00000458707 PRKRIP1Q9H875 184 aaPredicted RBP11.68□□□□□ -0.54
VPS50-208ENST00000458707 RRP7BPQ9NSQ0 103 aa11.68□□□□□ -0.54
VPS50-208ENST00000458707 SPATA31E1Q6ZUB1 1445 aa11.68□□□□□ -0.54
VPS50-208ENST00000458707 MPHOSPH9Q99550 1183 aa11.68□□□□□ -0.54
VPS50-208ENST00000458707 ADGBQ8N7X0 1667 aa11.67□□□□□ -0.54
VPS50-208ENST00000458707 ANKRD30BQ9BXX2 1392 aa11.67□□□□□ -0.54
VPS50-208ENST00000458707 ADAMTS12P58397 1594 aa11.67□□□□□ -0.54
VPS50-208ENST00000458707 CCDC184Q52MB2 194 aa11.66□□□□□ -0.54
VPS50-208ENST00000458707 L3MBTL2Q969R5 705 aa11.66□□□□□ -0.54
VPS50-208ENST00000458707 CDK13Q14004 1512 aaKnown RBP11.66□□□□□ -0.54
VPS50-208ENST00000458707 IRX6P78412 446 aaPredicted RBP11.66□□□□□ -0.54
VPS50-208ENST00000458707 C11orf95C9JLR9 678 aaPredicted RBP11.65□□□□□ -0.54
VPS50-208ENST00000458707 RIMBP3CA6NJZ7 1639 aa11.65□□□□□ -0.54
VPS50-208ENST00000458707 RIMBP3BA6NNM3 1639 aa11.65□□□□□ -0.54
VPS50-208ENST00000458707 RIMBP3Q9UFD9 1639 aa11.65□□□□□ -0.54
VPS50-208ENST00000458707 DAPK1P53355 1430 aa11.65□□□□□ -0.55
VPS50-208ENST00000458707 CYB5RLQ6IPT4 315 aa11.64□□□□□ -0.55
VPS50-208ENST00000458707 CROCC2H7BZ55 1655 aa11.64□□□□□ -0.55
VPS50-208ENST00000458707 CHIC2Q9UKJ5 165 aa11.63□□□□□ -0.55
VPS50-208ENST00000458707 BCORL1Q5H9F3 1711 aa11.63□□□□□ -0.55
VPS50-208ENST00000458707 PDS5BQ9NTI5 1447 aa11.63□□□□□ -0.55
VPS50-208ENST00000458707 KIF14Q15058 1648 aa11.63□□□□□ -0.55
VPS50-208ENST00000458707 SPDYE1Q8NFV5 336 aaPredicted RBP11.62□□□□□ -0.55
VPS50-208ENST00000458707 MBD5Q9P267 1494 aa11.62□□□□□ -0.55
VPS50-208ENST00000458707 ITSN2Q9NZM3 1697 aa11.62□□□□□ -0.55
VPS50-208ENST00000458707 MYT1LQ9UL68 1186 aa11.61□□□□□ -0.55
VPS50-208ENST00000458707 NBPF8Q3BBV2 869 aa11.61□□□□□ -0.55
VPS50-208ENST00000458707 MRS2Q9HD23 443 aa11.61□□□□□ -0.55
VPS50-208ENST00000458707 ABCC5O15440 1437 aa11.6□□□□□ -0.55
VPS50-208ENST00000458707 SMG6Q86US8 1419 aaKnown RBP11.6□□□□□ -0.55
VPS50-208ENST00000458707 KIF7Q2M1P5 1343 aa11.6□□□□□ -0.55
VPS50-208ENST00000458707 KDM5CP41229 1560 aa11.6□□□□□ -0.55
VPS50-208ENST00000458707 SSUH2Q9Y2M2 353 aa11.59□□□□□ -0.55
VPS50-208ENST00000458707 KIAA0556O60303 1618 aa11.59□□□□□ -0.55
VPS50-208ENST00000458707 RAPGEF6Q8TEU7 1601 aa11.59□□□□□ -0.55
Retrieved 100 of 20,778 RNA–protein pairs in 30.5 ms