RNA–Protein interactions for RNA: ENST00000458707.1

VPS50-208, Transcript of VPS50, EARP/GARPII complex subunit, humanhuman

TSL 2

Gene VPS50, Length 1,898 nt, Biotype protein coding, Subcellular localisation Cytosol .

RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS50-208ENST00000458707 AEBP2Q6ZN18 517 aaPredicted RBP21.9■■□□□ 1.1
VPS50-208ENST00000458707 CHIC1Q5VXU3 224 aa20.61■□□□□ 0.89
VPS50-208ENST00000458707 SENP3Q9H4L4 574 aaPredicted RBP18.8■□□□□ 0.6
VPS50-208ENST00000458707 PHF23Q9BUL5 403 aaPredicted RBP18.46■□□□□ 0.55
VPS50-208ENST00000458707 FOXD1Q16676 465 aa17.49■□□□□ 0.39
VPS50-208ENST00000458707 NISCHQ9Y2I1 1504 aa17.15■□□□□ 0.34
VPS50-208ENST00000458707 MSH5O43196 834 aa16.54■□□□□ 0.24
VPS50-208ENST00000458707 POTEDQ86YR6 584 aa16.51■□□□□ 0.23
VPS50-208ENST00000458707 PLPPR3Q6T4P5 718 aa16.35■□□□□ 0.21
VPS50-208ENST00000458707 PIAS4Q8N2W9 510 aaPredicted RBP16.27■□□□□ 0.19
VPS50-208ENST00000458707 PPP6R1Q9UPN7 881 aa16.12■□□□□ 0.17
VPS50-208ENST00000458707 ADRA2BP18089 450 aa16.03■□□□□ 0.16
VPS50-208ENST00000458707 DMRT2Q9Y5R5 561 aa14.86□□□□□ -0.03
VPS50-208ENST00000458707 MAPK8IP2Q13387 824 aaPredicted RBP14.79□□□□□ -0.04
VPS50-208ENST00000458707 SCAF1Q9H7N4 1312 aaKnown RBP14.78□□□□□ -0.04
VPS50-208ENST00000458707 CCDC180Q9P1Z9 1646 aa14.63□□□□□ -0.07
VPS50-208ENST00000458707 ZCCHC6Q5VYS8 1495 aaKnown RBP14.57□□□□□ -0.08
VPS50-208ENST00000458707 SHROOM4Q9ULL8 1493 aa14.56□□□□□ -0.08
VPS50-208ENST00000458707 SUPT5HO00267 1087 aaKnown RBP14.37□□□□□ -0.11
VPS50-208ENST00000458707 CACNB1Q02641 598 aaPredicted RBP14.27□□□□□ -0.13
VPS50-208ENST00000458707 PPP4R3CPQ6ZMV5 832 aa14.27□□□□□ -0.13
VPS50-208ENST00000458707 MYO15BQ96JP2 1530 aa14.25□□□□□ -0.13
VPS50-208ENST00000458707 HOXD11P31277 338 aaPredicted RBP14.23□□□□□ -0.13
VPS50-208ENST00000458707 PELP1Q8IZL8 1130 aaKnown RBP14.16□□□□□ -0.14
VPS50-208ENST00000458707 DCAF1Q9Y4B6 1507 aa14.16□□□□□ -0.14
VPS50-208ENST00000458707 HRCP23327 699 aa14.16□□□□□ -0.14
VPS50-208ENST00000458707 DCAF8L1A6NGE4 600 aa14.13□□□□□ -0.15
VPS50-208ENST00000458707 DNAJC5BQ9UF47 199 aa14.12□□□□□ -0.15
VPS50-208ENST00000458707 CNKSR2Q8WXI2 1034 aa14.1□□□□□ -0.15
VPS50-208ENST00000458707 RNF39Q9H2S5 420 aa14.06□□□□□ -0.16
VPS50-208ENST00000458707 RNF216Q9NWF9 866 aaPredicted RBP14.06□□□□□ -0.16
VPS50-208ENST00000458707 MYT1Q01538 1121 aa14.01□□□□□ -0.17
VPS50-208ENST00000458707 ABCC9O60706 1549 aa14□□□□□ -0.17
VPS50-208ENST00000458707 PCGF6Q9BYE7 350 aa13.9□□□□□ -0.18
VPS50-208ENST00000458707 C1QBPQ07021 282 aaKnown RBP13.88□□□□□ -0.19
VPS50-208ENST00000458707 DCAF8L2P0C7V8 631 aa13.85□□□□□ -0.19
VPS50-208ENST00000458707 DNAJC5Q9H3Z4 198 aa13.8□□□□□ -0.2
VPS50-208ENST00000458707 PPARGC1BQ86YN6 1023 aaKnown RBP13.72□□□□□ -0.21
VPS50-208ENST00000458707 LOC105371045A0A1W2PR82 267 aa13.7□□□□□ -0.22
VPS50-208ENST00000458707 NCBP3Q53F19 620 aaKnown RBP13.68□□□□□ -0.22
VPS50-208ENST00000458707 TRIM26Q12899 539 aaPredicted RBP13.67□□□□□ -0.22
VPS50-208ENST00000458707 RSF1Q96T23 1441 aaPredicted RBP13.6□□□□□ -0.23
VPS50-208ENST00000458707 RB1CC1Q8TDY2 1594 aa13.58□□□□□ -0.24
VPS50-208ENST00000458707 SCRIBQ14160 1630 aa13.57□□□□□ -0.24
VPS50-208ENST00000458707 TTBK1Q5TCY1 1321 aaPredicted RBP13.54□□□□□ -0.24
VPS50-208ENST00000458707 ZEB1P37275 1124 aaPredicted RBP13.51□□□□□ -0.25
VPS50-208ENST00000458707 GRWD1Q9BQ67 446 aaKnown RBP eCLIP13.48□□□□□ -0.25
VPS50-208ENST00000458707 NPM3O75607 178 aaKnown RBP13.44□□□□□ -0.26
VPS50-208ENST00000458707 TRIM41Q8WV44 630 aa13.42□□□□□ -0.26
VPS50-208ENST00000458707 NACADO15069 1562 aa13.38□□□□□ -0.27
VPS50-208ENST00000458707 MROH2BQ7Z745 1585 aa13.31□□□□□ -0.28
VPS50-208ENST00000458707 EIF4G1Q04637 1599 aaKnown RBP13.31□□□□□ -0.28
VPS50-208ENST00000458707 WIZO95785 1651 aa13.3□□□□□ -0.28
VPS50-208ENST00000458707 CECR2Q9BXF3 1484 aa13.29□□□□□ -0.28
VPS50-208ENST00000458707 BAZ1AQ9NRL2 1556 aaPredicted RBP13.29□□□□□ -0.28
VPS50-208ENST00000458707 FAM9AQ8IZU1 332 aaPredicted RBP13.23□□□□□ -0.29
VPS50-208ENST00000458707 U3KPZ7 1027 aaPredicted RBP13.19□□□□□ -0.3
VPS50-208ENST00000458707 WRNQ14191 1432 aaPredicted RBP eCLIP13.11□□□□□ -0.31
VPS50-208ENST00000458707 TOP2AP11388 1531 aaKnown RBP13.1□□□□□ -0.31
VPS50-208ENST00000458707 DSG3P32926 999 aa13.06□□□□□ -0.32
VPS50-208ENST00000458707 SMARCA4P51532 1647 aa13.06□□□□□ -0.32
VPS50-208ENST00000458707 UNC13AQ9UPW8 1703 aa13.05□□□□□ -0.32
VPS50-208ENST00000458707 SMARCA2P51531 1590 aa13.04□□□□□ -0.32
VPS50-208ENST00000458707 EHMT2Q96KQ7 1210 aa13.04□□□□□ -0.32
VPS50-208ENST00000458707 SPINK5Q9NQ38 1064 aaPredicted RBP13.03□□□□□ -0.32
VPS50-208ENST00000458707 ABCC8Q09428 1581 aa13.02□□□□□ -0.32
VPS50-208ENST00000458707 CAPN15O75808 1086 aa13.02□□□□□ -0.32
VPS50-208ENST00000458707 CCDC88BA6NC98 1476 aa13□□□□□ -0.33
VPS50-208ENST00000458707 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP12.99□□□□□ -0.33
VPS50-208ENST00000458707 CCER1Q8TC90 406 aaPredicted RBP12.99□□□□□ -0.33
VPS50-208ENST00000458707 ACIN1Q9UKV3 1341 aaKnown RBP12.98□□□□□ -0.33
VPS50-208ENST00000458707 EEA1Q15075 1411 aa12.97□□□□□ -0.33
VPS50-208ENST00000458707 CEP162Q5TB80 1403 aa12.97□□□□□ -0.33
VPS50-208ENST00000458707 TNIKQ9UKE5 1360 aa12.96□□□□□ -0.33
VPS50-208ENST00000458707 PABPN1Q86U42 306 aaKnown RBP eCLIP12.93□□□□□ -0.34
VPS50-208ENST00000458707 KCNA4P22459 653 aa12.91□□□□□ -0.34
VPS50-208ENST00000458707 SLC4A2P04920 1241 aa12.9□□□□□ -0.34
VPS50-208ENST00000458707 NEUROD1Q13562 356 aa12.9□□□□□ -0.34
VPS50-208ENST00000458707 DIEXFQ68CQ4 756 aaKnown RBP12.9□□□□□ -0.34
VPS50-208ENST00000458707 APLP2Q06481 763 aa12.89□□□□□ -0.35
VPS50-208ENST00000458707 POTEHQ6S545 545 aa12.89□□□□□ -0.35
VPS50-208ENST00000458707 SOGA1O94964 1423 aa12.89□□□□□ -0.35
VPS50-208ENST00000458707 CENPBP07199 599 aaPredicted RBP12.86□□□□□ -0.35
VPS50-208ENST00000458707 GOLGA3Q08378 1498 aa12.86□□□□□ -0.35
VPS50-208ENST00000458707 PEG3Q9GZU2 1588 aa12.85□□□□□ -0.35
VPS50-208ENST00000458707 KIF21BO75037 1637 aa12.85□□□□□ -0.35
VPS50-208ENST00000458707 PRKCSHP14314 528 aaPredicted RBP12.85□□□□□ -0.35
VPS50-208ENST00000458707 RUSC2Q8N2Y8 1516 aa12.84□□□□□ -0.35
VPS50-208ENST00000458707 CSRNP3Q8WYN3 585 aa12.82□□□□□ -0.36
VPS50-208ENST00000458707 ZNF219Q9P2Y4 722 aaPredicted RBP12.8□□□□□ -0.36
VPS50-208ENST00000458707 HNRNPUL2Q1KMD3 747 aaKnown RBP12.8□□□□□ -0.36
VPS50-208ENST00000458707 GTF3C3Q9Y5Q9 886 aa12.78□□□□□ -0.36
VPS50-208ENST00000458707 ZNF316A6NFI3 1004 aaPredicted RBP12.77□□□□□ -0.37
VPS50-208ENST00000458707 ERICH6Q7L0X2 663 aa12.77□□□□□ -0.37
VPS50-208ENST00000458707 CEP164Q9UPV0 1460 aa12.77□□□□□ -0.37
VPS50-208ENST00000458707 SYNJ1O43426 1573 aa12.76□□□□□ -0.37
VPS50-208ENST00000458707 BICRAQ9NZM4 1560 aa12.75□□□□□ -0.37
VPS50-208ENST00000458707 TRHP20396 242 aaPredicted RBP12.74□□□□□ -0.37
VPS50-208ENST00000458707 BAZ1BQ9UIG0 1483 aaKnown RBP12.73□□□□□ -0.37
VPS50-208ENST00000458707 UBTFP17480 764 aaKnown RBP12.72□□□□□ -0.37
Retrieved 100 of 20,778 RNA–protein pairs in 219.5 ms