RNA–Protein interactions for RNA: ENST00000400814.3

PRAMEF1-202, Transcript of PRAME family member 1, humanhuman

TSL 1 (best)

Gene PRAMEF1, Length 1,327 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRAMEF1-202ENST00000400814 RAPGEF2Q9Y4G8 1499 aa15.45■□□□□ 0.06
PRAMEF1-202ENST00000400814 REM2Q8IYK8 340 aaPredicted RBP15.44■□□□□ 0.06
PRAMEF1-202ENST00000400814 TNIKQ9UKE5 1360 aa15.44■□□□□ 0.06
PRAMEF1-202ENST00000400814 PYGBP11216 843 aa15.43■□□□□ 0.06
PRAMEF1-202ENST00000400814 GRIN2BQ13224 1484 aa15.42■□□□□ 0.06
PRAMEF1-202ENST00000400814 CUL7Q14999 1698 aa15.42■□□□□ 0.06
PRAMEF1-202ENST00000400814 UBTFP17480 764 aaKnown RBP15.41■□□□□ 0.06
PRAMEF1-202ENST00000400814 PBRM1Q86U86 1689 aa15.4■□□□□ 0.06
PRAMEF1-202ENST00000400814 EIF4G3O43432 1585 aaKnown RBP15.39■□□□□ 0.05
PRAMEF1-202ENST00000400814 FHAD1B1AJZ9 1412 aa15.36■□□□□ 0.05
PRAMEF1-202ENST00000400814 ADAMTS12P58397 1594 aa15.32■□□□□ 0.04
PRAMEF1-202ENST00000400814 MAGI1Q96QZ7 1491 aaPredicted RBP15.31■□□□□ 0.04
PRAMEF1-202ENST00000400814 SNAPC4Q5SXM2 1469 aa15.3■□□□□ 0.04
PRAMEF1-202ENST00000400814 CEP162Q5TB80 1403 aa15.28■□□□□ 0.04
PRAMEF1-202ENST00000400814 P3H3Q8IVL6 736 aa15.26■□□□□ 0.03
PRAMEF1-202ENST00000400814 SYNJ2O15056 1496 aa15.26■□□□□ 0.03
PRAMEF1-202ENST00000400814 PITPNM1O00562 1244 aa15.25■□□□□ 0.03
PRAMEF1-202ENST00000400814 CHMP7Q8WUX9 453 aaPredicted RBP15.22■□□□□ 0.03
PRAMEF1-202ENST00000400814 GRIN2AQ12879 1464 aa15.22■□□□□ 0.03
PRAMEF1-202ENST00000400814 CLIP1P30622 1438 aa15.21■□□□□ 0.03
PRAMEF1-202ENST00000400814 ZNF467Q7Z7K2 595 aaPredicted RBP15.21■□□□□ 0.03
PRAMEF1-202ENST00000400814 CTTNBP2Q8WZ74 1663 aa15.2■□□□□ 0.02
PRAMEF1-202ENST00000400814 CADPS2Q86UW7 1296 aa15.18■□□□□ 0.02
PRAMEF1-202ENST00000400814 WDR70Q9NW82 654 aa15.18■□□□□ 0.02
PRAMEF1-202ENST00000400814 TSPYL2Q9H2G4 693 aaPredicted RBP15.17■□□□□ 0.02
PRAMEF1-202ENST00000400814 KIAA0586Q9BVV6 1533 aa15.16■□□□□ 0.02
PRAMEF1-202ENST00000400814 PDAP1Q13442 181 aaKnown RBP15.16■□□□□ 0.02
PRAMEF1-202ENST00000400814 GTF3C3Q9Y5Q9 886 aa15.16■□□□□ 0.02
PRAMEF1-202ENST00000400814 NUP160Q12769 1436 aa15.15■□□□□ 0.02
PRAMEF1-202ENST00000400814 ARHGAP35Q9NRY4 1499 aa15.14■□□□□ 0.01
PRAMEF1-202ENST00000400814 RANGAP1P46060 587 aaPredicted RBP15.14■□□□□ 0.01
PRAMEF1-202ENST00000400814 KCNV2Q8TDN2 545 aa15.14■□□□□ 0.01
PRAMEF1-202ENST00000400814 CEP170Q5SW79 1584 aa15.12■□□□□ 0.01
PRAMEF1-202ENST00000400814 TIMELESSQ9UNS1 1208 aa15.12■□□□□ 0.01
PRAMEF1-202ENST00000400814 IQGAP2Q13576 1575 aa15.11■□□□□ 0.01
PRAMEF1-202ENST00000400814 TULP1O00294 542 aaPredicted RBP15.11■□□□□ 0.01
PRAMEF1-202ENST00000400814 CHADLQ6NUI6 762 aa15.11■□□□□ 0.01
PRAMEF1-202ENST00000400814 CHD1O14646 1710 aa15.1■□□□□ 0.01
PRAMEF1-202ENST00000400814 PCDHB8Q9UN66 801 aa15.1■□□□□ 0.01
PRAMEF1-202ENST00000400814 PCDHB13Q9Y5F0 798 aa15.1■□□□□ 0.01
PRAMEF1-202ENST00000400814 ARAP1Q96P48 1450 aa15.1■□□□□ 0.01
PRAMEF1-202ENST00000400814 EFCAB5A4FU69 1503 aa15.08■□□□□ 0.01
PRAMEF1-202ENST00000400814 TMEM132AQ24JP5 1023 aa15.08■□□□□ 0
PRAMEF1-202ENST00000400814 DHX30Q7L2E3 1194 aaKnown RBP eCLIP15.08■□□□□ 0
PRAMEF1-202ENST00000400814 UGGT2Q9NYU1 1516 aa15.08■□□□□ 0
PRAMEF1-202ENST00000400814 VPS8Q8N3P4 1428 aa15.07■□□□□ 0
PRAMEF1-202ENST00000400814 SAMD9Q5K651 1589 aa15.07■□□□□ 0
PRAMEF1-202ENST00000400814 LMOD2Q6P5Q4 547 aa15.06■□□□□ 0
PRAMEF1-202ENST00000400814 MFRPQ9BY79 579 aa15.06■□□□□ 0
PRAMEF1-202ENST00000400814 FARP1Q9Y4F1 1045 aaPredicted RBP15.06■□□□□ 0
PRAMEF1-202ENST00000400814 PSEN1P49768 467 aa15.05■□□□□ -0
PRAMEF1-202ENST00000400814 JPH4Q96JJ6 628 aa15.04■□□□□ -0
PRAMEF1-202ENST00000400814 ZNF579Q8NAF0 562 aaKnown RBP15.03■□□□□ -0
PRAMEF1-202ENST00000400814 CCDC61Q9Y6R9 512 aa15.01□□□□□ -0.01
PRAMEF1-202ENST00000400814 FHOD3Q2V2M9 1422 aa15□□□□□ -0.01
PRAMEF1-202ENST00000400814 DISP1Q96F81 1524 aa15□□□□□ -0.01
PRAMEF1-202ENST00000400814 CLASP1Q7Z460 1538 aa14.97□□□□□ -0.01
PRAMEF1-202ENST00000400814 FMN1Q68DA7 1419 aa14.96□□□□□ -0.01
PRAMEF1-202ENST00000400814 KIAA0556O60303 1618 aa14.96□□□□□ -0.02
PRAMEF1-202ENST00000400814 SHROOM2Q13796 1616 aa14.96□□□□□ -0.02
PRAMEF1-202ENST00000400814 ERICH6Q7L0X2 663 aa14.95□□□□□ -0.02
PRAMEF1-202ENST00000400814 CARMIL2Q6F5E8 1435 aa14.95□□□□□ -0.02
PRAMEF1-202ENST00000400814 PPP1R37O75864 691 aa14.94□□□□□ -0.02
PRAMEF1-202ENST00000400814 ARHGEF1Q92888 912 aaKnown RBP14.93□□□□□ -0.02
PRAMEF1-202ENST00000400814 CASKIN1Q8WXD9 1431 aa14.92□□□□□ -0.02
PRAMEF1-202ENST00000400814 PRG4Q92954 1404 aaPredicted RBP14.92□□□□□ -0.02
PRAMEF1-202ENST00000400814 FBXO22Q8NEZ5 403 aa14.91□□□□□ -0.02
PRAMEF1-202ENST00000400814 NLRP6P59044 892 aa14.9□□□□□ -0.02
PRAMEF1-202ENST00000400814 E2F4Q16254 413 aa14.89□□□□□ -0.03
PRAMEF1-202ENST00000400814 EFCAB3Q8N7B9 438 aa14.89□□□□□ -0.03
PRAMEF1-202ENST00000400814 MAP3K1Q13233 1512 aa14.88□□□□□ -0.03
PRAMEF1-202ENST00000400814 FYCO1Q9BQS8 1478 aa14.88□□□□□ -0.03
PRAMEF1-202ENST00000400814 SOX12O15370 315 aa14.88□□□□□ -0.03
PRAMEF1-202ENST00000400814 PRKAR2AP13861 404 aaKnown RBP14.88□□□□□ -0.03
PRAMEF1-202ENST00000400814 IFNL1Q8IU54 200 aa14.88□□□□□ -0.03
PRAMEF1-202ENST00000400814 PCF11O94913 1555 aaKnown RBP14.87□□□□□ -0.03
PRAMEF1-202ENST00000400814 CABP2Q9NPB3 220 aa14.85□□□□□ -0.03
PRAMEF1-202ENST00000400814 PHF8Q9UPP1 1060 aa14.85□□□□□ -0.03
PRAMEF1-202ENST00000400814 PPARGC1BQ86YN6 1023 aaKnown RBP14.84□□□□□ -0.03
PRAMEF1-202ENST00000400814 ZC3H15Q8WU90 426 aaKnown RBP14.83□□□□□ -0.04
PRAMEF1-202ENST00000400814 PTPRGP23470 1445 aa14.83□□□□□ -0.04
PRAMEF1-202ENST00000400814 ERCC6L2Q5T890 1561 aa14.82□□□□□ -0.04
PRAMEF1-202ENST00000400814 PAK3O75914 559 aaPredicted RBP14.82□□□□□ -0.04
PRAMEF1-202ENST00000400814 KANK4Q5T7N3 995 aaPredicted RBP14.82□□□□□ -0.04
PRAMEF1-202ENST00000400814 TIAM1Q13009 1591 aa14.82□□□□□ -0.04
PRAMEF1-202ENST00000400814 MAP3K13O43283 966 aa14.81□□□□□ -0.04
PRAMEF1-202ENST00000400814 ATP1B4Q9UN42 357 aaPredicted RBP14.81□□□□□ -0.04
PRAMEF1-202ENST00000400814 TESPA1A2RU30 521 aaPredicted RBP14.8□□□□□ -0.04
PRAMEF1-202ENST00000400814 BRPF1P55201 1214 aaPredicted RBP14.8□□□□□ -0.04
PRAMEF1-202ENST00000400814 KIF12Q96FN5 646 aa14.8□□□□□ -0.04
PRAMEF1-202ENST00000400814 HECW1Q76N89 1606 aa14.79□□□□□ -0.04
PRAMEF1-202ENST00000400814 RAPGEF6Q8TEU7 1601 aa14.79□□□□□ -0.04
PRAMEF1-202ENST00000400814 SEMA3EO15041 775 aa14.79□□□□□ -0.04
PRAMEF1-202ENST00000400814 ABCA8O94911 1581 aa14.79□□□□□ -0.04
PRAMEF1-202ENST00000400814 PLB1Q6P1J6 1458 aa14.78□□□□□ -0.04
PRAMEF1-202ENST00000400814 FXR2P51116 673 aaKnown RBP eCLIP14.78□□□□□ -0.04
PRAMEF1-202ENST00000400814 TRIM26Q12899 539 aaPredicted RBP14.78□□□□□ -0.04
PRAMEF1-202ENST00000400814 LRRIQ1Q96JM4 1722 aa14.78□□□□□ -0.04
PRAMEF1-202ENST00000400814 TTBK1Q5TCY1 1321 aaPredicted RBP14.78□□□□□ -0.04
PRAMEF1-202ENST00000400814 CFAP43Q8NDM7 1665 aa14.77□□□□□ -0.04
Retrieved 100 of 20,778 RNA–protein pairs in 21.7 ms