RNA–Protein interactions for RNA: ENST00000400814.3

PRAMEF1-202, Transcript of PRAME family member 1, humanhuman

TSL 1 (best)

Gene PRAMEF1, Length 1,327 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRAMEF1-202ENST00000400814 CHIC1Q5VXU3 224 aa28.12■■■□□ 2.09
PRAMEF1-202ENST00000400814 AEBP2Q6ZN18 517 aaPredicted RBP27.81■■■□□ 2.04
PRAMEF1-202ENST00000400814 PHF23Q9BUL5 403 aaPredicted RBP24.87■■□□□ 1.57
PRAMEF1-202ENST00000400814 SENP3Q9H4L4 574 aaPredicted RBP23.39■■□□□ 1.34
PRAMEF1-202ENST00000400814 PLPPR3Q6T4P5 718 aa23.26■■□□□ 1.31
PRAMEF1-202ENST00000400814 NISCHQ9Y2I1 1504 aa22.08■■□□□ 1.12
PRAMEF1-202ENST00000400814 ADRA2BP18089 450 aa21.8■■□□□ 1.08
PRAMEF1-202ENST00000400814 FOXD1Q16676 465 aa21.62■■□□□ 1.05
PRAMEF1-202ENST00000400814 PPP6R1Q9UPN7 881 aa21.61■■□□□ 1.05
PRAMEF1-202ENST00000400814 KCNA4P22459 653 aa21.31■■□□□ 1
PRAMEF1-202ENST00000400814 EHMT2Q96KQ7 1210 aa21.04■□□□□ 0.96
PRAMEF1-202ENST00000400814 PPP4R3CPQ6ZMV5 832 aa20.65■□□□□ 0.9
PRAMEF1-202ENST00000400814 PIAS4Q8N2W9 510 aaPredicted RBP20.61■□□□□ 0.89
PRAMEF1-202ENST00000400814 SLC4A1APQ9BWU0 796 aaKnown RBP20.46■□□□□ 0.87
PRAMEF1-202ENST00000400814 NCBP3Q53F19 620 aaKnown RBP20.37■□□□□ 0.85
PRAMEF1-202ENST00000400814 CSRNP3Q8WYN3 585 aa20.35■□□□□ 0.85
PRAMEF1-202ENST00000400814 NPM3O75607 178 aaKnown RBP20.1■□□□□ 0.81
PRAMEF1-202ENST00000400814 CNKSR2Q8WXI2 1034 aa19.83■□□□□ 0.77
PRAMEF1-202ENST00000400814 SCAF1Q9H7N4 1312 aaKnown RBP19.75■□□□□ 0.75
PRAMEF1-202ENST00000400814 ZBTB22O15209 634 aa19.63■□□□□ 0.73
PRAMEF1-202ENST00000400814 MSH5O43196 834 aa19.51■□□□□ 0.71
PRAMEF1-202ENST00000400814 DNAJC5BQ9UF47 199 aa19.36■□□□□ 0.69
PRAMEF1-202ENST00000400814 MAPK8IP2Q13387 824 aaPredicted RBP19.35■□□□□ 0.69
PRAMEF1-202ENST00000400814 CCDC180Q9P1Z9 1646 aa19.33■□□□□ 0.68
PRAMEF1-202ENST00000400814 FOXD4L1Q9NU39 408 aa19.3■□□□□ 0.68
PRAMEF1-202ENST00000400814 RNF216Q9NWF9 866 aaPredicted RBP19.2■□□□□ 0.66
PRAMEF1-202ENST00000400814 HOXD11P31277 338 aaPredicted RBP18.86■□□□□ 0.61
PRAMEF1-202ENST00000400814 DMRT2Q9Y5R5 561 aa18.85■□□□□ 0.61
PRAMEF1-202ENST00000400814 SLC4A2P04920 1241 aa18.74■□□□□ 0.59
PRAMEF1-202ENST00000400814 ATXN8OSP0DMR3 200 aa18.54■□□□□ 0.56
PRAMEF1-202ENST00000400814 MYCNP04198 464 aaPredicted RBP18.53■□□□□ 0.56
PRAMEF1-202ENST00000400814 ZCCHC6Q5VYS8 1495 aaKnown RBP18.49■□□□□ 0.55
PRAMEF1-202ENST00000400814 RTN4Q9NQC3 1192 aaKnown RBP18.46■□□□□ 0.55
PRAMEF1-202ENST00000400814 AMER1Q5JTC6 1135 aaPredicted RBP18.45■□□□□ 0.54
PRAMEF1-202ENST00000400814 ABCC9O60706 1549 aa18.38■□□□□ 0.53
PRAMEF1-202ENST00000400814 FKBP8Q14318 412 aa18.31■□□□□ 0.52
PRAMEF1-202ENST00000400814 DCAF1Q9Y4B6 1507 aa18.3■□□□□ 0.52
PRAMEF1-202ENST00000400814 SLC24A1O60721 1099 aa18.29■□□□□ 0.52
PRAMEF1-202ENST00000400814 DCAF8L2P0C7V8 631 aa18.22■□□□□ 0.51
PRAMEF1-202ENST00000400814 MYO15BQ96JP2 1530 aa18.17■□□□□ 0.5
PRAMEF1-202ENST00000400814 NACADO15069 1562 aa18.06■□□□□ 0.48
PRAMEF1-202ENST00000400814 ATF5Q9Y2D1 282 aaPredicted RBP17.99■□□□□ 0.47
PRAMEF1-202ENST00000400814 DCAF8L1A6NGE4 600 aa17.97■□□□□ 0.47
PRAMEF1-202ENST00000400814 GRWD1Q9BQ67 446 aaKnown RBP eCLIP17.97■□□□□ 0.47
PRAMEF1-202ENST00000400814 RB1CC1Q8TDY2 1594 aa17.92■□□□□ 0.46
PRAMEF1-202ENST00000400814 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP17.88■□□□□ 0.45
PRAMEF1-202ENST00000400814 HNRNPUL2Q1KMD3 747 aaKnown RBP17.88■□□□□ 0.45
PRAMEF1-202ENST00000400814 SAMD1Q6SPF0 538 aaPredicted RBP17.87■□□□□ 0.45
PRAMEF1-202ENST00000400814 U3KPZ7 1027 aaPredicted RBP17.79■□□□□ 0.44
PRAMEF1-202ENST00000400814 SHROOM4Q9ULL8 1493 aa17.77■□□□□ 0.43
PRAMEF1-202ENST00000400814 SCRIBQ14160 1630 aa17.67■□□□□ 0.42
PRAMEF1-202ENST00000400814 ZNF219Q9P2Y4 722 aaPredicted RBP17.57■□□□□ 0.4
PRAMEF1-202ENST00000400814 UNC13AQ9UPW8 1703 aa17.53■□□□□ 0.4
PRAMEF1-202ENST00000400814 APLP2Q06481 763 aa17.45■□□□□ 0.38
PRAMEF1-202ENST00000400814 BICRAQ9NZM4 1560 aa17.4■□□□□ 0.38
PRAMEF1-202ENST00000400814 FBXO3Q9UK99 471 aa17.37■□□□□ 0.37
PRAMEF1-202ENST00000400814 SPDYE4A6NLX3 237 aa17.34■□□□□ 0.37
PRAMEF1-202ENST00000400814 PABPN1Q86U42 306 aaKnown RBP eCLIP17.31■□□□□ 0.36
PRAMEF1-202ENST00000400814 MKRN4PQ13434 485 aaPredicted RBP17.26■□□□□ 0.35
PRAMEF1-202ENST00000400814 PROM2Q8N271 834 aa17.21■□□□□ 0.34
PRAMEF1-202ENST00000400814 CECR2Q9BXF3 1484 aa17.15■□□□□ 0.34
PRAMEF1-202ENST00000400814 FBLN2P98095 1184 aa17.13■□□□□ 0.33
PRAMEF1-202ENST00000400814 VASPP50552 380 aaPredicted RBP17.12■□□□□ 0.33
PRAMEF1-202ENST00000400814 RSF1Q96T23 1441 aaPredicted RBP17.06■□□□□ 0.32
PRAMEF1-202ENST00000400814 BAZ1AQ9NRL2 1556 aaPredicted RBP17.04■□□□□ 0.32
PRAMEF1-202ENST00000400814 SUPT5HO00267 1087 aaKnown RBP17.04■□□□□ 0.32
PRAMEF1-202ENST00000400814 TRHP20396 242 aaPredicted RBP17.04■□□□□ 0.32
PRAMEF1-202ENST00000400814 MROH2BQ7Z745 1585 aa17.03■□□□□ 0.32
PRAMEF1-202ENST00000400814 PLCB2Q00722 1185 aa17.01■□□□□ 0.31
PRAMEF1-202ENST00000400814 SPINK5Q9NQ38 1064 aaPredicted RBP17.01■□□□□ 0.31
PRAMEF1-202ENST00000400814 POLA2Q14181 598 aa16.99■□□□□ 0.31
PRAMEF1-202ENST00000400814 IFNLR1Q8IU57 520 aaPredicted RBP16.98■□□□□ 0.31
PRAMEF1-202ENST00000400814 SMARCA4P51532 1647 aa16.98■□□□□ 0.31
PRAMEF1-202ENST00000400814 CAPN15O75808 1086 aa16.88■□□□□ 0.29
PRAMEF1-202ENST00000400814 EIF4G1Q04637 1599 aaKnown RBP16.86■□□□□ 0.29
PRAMEF1-202ENST00000400814 WIZO95785 1651 aa16.85■□□□□ 0.29
PRAMEF1-202ENST00000400814 PEG3Q9GZU2 1588 aa16.83■□□□□ 0.29
PRAMEF1-202ENST00000400814 RNF39Q9H2S5 420 aa16.82■□□□□ 0.28
PRAMEF1-202ENST00000400814 PKD2Q13563 968 aa16.8■□□□□ 0.28
PRAMEF1-202ENST00000400814 HAP1P54257 671 aaPredicted RBP16.77■□□□□ 0.28
PRAMEF1-202ENST00000400814 ATAD2BQ9ULI0 1458 aa16.77■□□□□ 0.27
PRAMEF1-202ENST00000400814 ZBTB12Q9Y330 459 aaPredicted RBP16.75■□□□□ 0.27
PRAMEF1-202ENST00000400814 SMARCA2P51531 1590 aa16.75■□□□□ 0.27
PRAMEF1-202ENST00000400814 NCAPD3P42695 1498 aa16.69■□□□□ 0.26
PRAMEF1-202ENST00000400814 TOP2AP11388 1531 aaKnown RBP16.69■□□□□ 0.26
PRAMEF1-202ENST00000400814 C1QBPQ07021 282 aaKnown RBP16.68■□□□□ 0.26
PRAMEF1-202ENST00000400814 CC2D2AQ9P2K1 1620 aa16.66■□□□□ 0.26
PRAMEF1-202ENST00000400814 ABCB7O75027 752 aa16.65■□□□□ 0.26
PRAMEF1-202ENST00000400814 BAZ1BQ9UIG0 1483 aaKnown RBP16.63■□□□□ 0.25
PRAMEF1-202ENST00000400814 HMGXB3Q12766 1538 aa16.62■□□□□ 0.25
PRAMEF1-202ENST00000400814 SPOCK2Q92563 424 aa16.6■□□□□ 0.25
PRAMEF1-202ENST00000400814 KLHL34Q8N239 644 aa16.59■□□□□ 0.25
PRAMEF1-202ENST00000400814 VSIG10Q8N0Z9 540 aa16.55■□□□□ 0.24
PRAMEF1-202ENST00000400814 CCDC88BA6NC98 1476 aa16.54■□□□□ 0.24
PRAMEF1-202ENST00000400814 STAG3Q9UJ98 1225 aa16.52■□□□□ 0.24
PRAMEF1-202ENST00000400814 ECM2O94769 699 aaPredicted RBP16.51■□□□□ 0.23
PRAMEF1-202ENST00000400814 ZNF692Q9BU19 519 aaPredicted RBP16.51■□□□□ 0.23
PRAMEF1-202ENST00000400814 BCANQ96GW7 911 aa16.5■□□□□ 0.23
PRAMEF1-202ENST00000400814 BBXQ8WY36 941 aaPredicted RBP16.48■□□□□ 0.23
PRAMEF1-202ENST00000400814 ZBTB4Q9P1Z0 1013 aaPredicted RBP16.45■□□□□ 0.22
Retrieved 100 of 20,778 RNA–protein pairs in 54.6 ms