RNA–Protein interactions for RNA: ENST00000397163.7

CAPN3-206, Transcript of calpain 3, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene CAPN3, Length 3,228 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CAPN3-206ENST00000397163 PRKRIP1Q9H875 184 aaPredicted RBP12.52□□□□□ -0.41
CAPN3-206ENST00000397163 SNAPC4Q5SXM2 1469 aa12.5□□□□□ -0.41
CAPN3-206ENST00000397163 ZBED9Q6R2W3 1325 aa12.5□□□□□ -0.41
CAPN3-206ENST00000397163 L3MBTL2Q969R5 705 aa12.49□□□□□ -0.41
CAPN3-206ENST00000397163 C11orf95C9JLR9 678 aaPredicted RBP12.49□□□□□ -0.41
CAPN3-206ENST00000397163 GRIN2BQ13224 1484 aa12.49□□□□□ -0.41
CAPN3-206ENST00000397163 CCDC7Q96M83 1385 aa12.48□□□□□ -0.41
CAPN3-206ENST00000397163 ADAMTS12P58397 1594 aa12.48□□□□□ -0.41
CAPN3-206ENST00000397163 RTL5Q5HYW3 569 aaPredicted RBP12.48□□□□□ -0.41
CAPN3-206ENST00000397163 FOXD1Q16676 465 aa12.47□□□□□ -0.41
CAPN3-206ENST00000397163 MPHOSPH9Q99550 1183 aa12.47□□□□□ -0.41
CAPN3-206ENST00000397163 MAGI1Q96QZ7 1491 aaPredicted RBP12.46□□□□□ -0.41
CAPN3-206ENST00000397163 NCOA1Q15788 1441 aa12.45□□□□□ -0.42
CAPN3-206ENST00000397163 CNGB1Q14028 1251 aaPredicted RBP12.45□□□□□ -0.42
CAPN3-206ENST00000397163 CTTNBP2Q8WZ74 1663 aa12.43□□□□□ -0.42
CAPN3-206ENST00000397163 SUPT6HQ7KZ85 1726 aaKnown RBP12.43□□□□□ -0.42
CAPN3-206ENST00000397163 EHBP1L1Q8N3D4 1523 aa12.43□□□□□ -0.42
CAPN3-206ENST00000397163 DENND4BO75064 1496 aaPredicted RBP12.42□□□□□ -0.42
CAPN3-206ENST00000397163 EIF5BO60841 1220 aaKnown RBP12.42□□□□□ -0.42
CAPN3-206ENST00000397163 FBLN2P98095 1184 aa12.41□□□□□ -0.42
CAPN3-206ENST00000397163 NBPF8Q3BBV2 869 aa12.41□□□□□ -0.42
CAPN3-206ENST00000397163 CHMP7Q8WUX9 453 aaPredicted RBP12.41□□□□□ -0.42
CAPN3-206ENST00000397163 KIF7Q2M1P5 1343 aa12.41□□□□□ -0.42
CAPN3-206ENST00000397163 POLR3GLQ9BT43 218 aa12.4□□□□□ -0.42
CAPN3-206ENST00000397163 UGGT2Q9NYU1 1516 aa12.4□□□□□ -0.42
CAPN3-206ENST00000397163 ANP32AP39687 249 aaKnown RBP12.39□□□□□ -0.43
CAPN3-206ENST00000397163 HECW1Q76N89 1606 aa12.39□□□□□ -0.43
CAPN3-206ENST00000397163 ARID3CA6NKF2 412 aa12.38□□□□□ -0.43
CAPN3-206ENST00000397163 SENP3-EIF4A1A0A087X0R7 540 aa12.38□□□□□ -0.43
CAPN3-206ENST00000397163 UBE2Q2Q8WVN8 375 aa12.38□□□□□ -0.43
CAPN3-206ENST00000397163 AKNAQ7Z591 1439 aa12.38□□□□□ -0.43
CAPN3-206ENST00000397163 NUDCQ9Y266 331 aa12.37□□□□□ -0.43
CAPN3-206ENST00000397163 LAS1LQ9Y4W2 734 aaKnown RBP12.37□□□□□ -0.43
CAPN3-206ENST00000397163 SAMD9Q5K651 1589 aa12.37□□□□□ -0.43
CAPN3-206ENST00000397163 SYNJ2O15056 1496 aa12.37□□□□□ -0.43
CAPN3-206ENST00000397163 NPM2Q86SE8 214 aaKnown RBP12.37□□□□□ -0.43
CAPN3-206ENST00000397163 TCOF1Q13428 1488 aaKnown RBP12.37□□□□□ -0.43
CAPN3-206ENST00000397163 LRRIQ1Q96JM4 1722 aa12.37□□□□□ -0.43
CAPN3-206ENST00000397163 KDM6BO15054 1643 aa12.36□□□□□ -0.43
CAPN3-206ENST00000397163 SMG6Q86US8 1419 aaKnown RBP12.36□□□□□ -0.43
CAPN3-206ENST00000397163 MAGI3Q5TCQ9 1506 aa12.36□□□□□ -0.43
CAPN3-206ENST00000397163 SLC4A1APQ9BWU0 796 aaKnown RBP12.36□□□□□ -0.43
CAPN3-206ENST00000397163 ZBTB47Q9UFB7 747 aaPredicted RBP12.35□□□□□ -0.43
CAPN3-206ENST00000397163 ARHGEF11O15085 1522 aa12.35□□□□□ -0.43
CAPN3-206ENST00000397163 ANKRD30BQ9BXX2 1392 aa12.35□□□□□ -0.43
CAPN3-206ENST00000397163 GCC2Q8IWJ2 1684 aa12.35□□□□□ -0.43
CAPN3-206ENST00000397163 IPO9Q96P70 1041 aaKnown RBP12.34□□□□□ -0.43
CAPN3-206ENST00000397163 RPRD2Q5VT52 1461 aaKnown RBP12.33□□□□□ -0.44
CAPN3-206ENST00000397163 ZNF326Q5BKZ1 582 aaKnown RBP12.33□□□□□ -0.44
CAPN3-206ENST00000397163 GRIN2AQ12879 1464 aa12.33□□□□□ -0.44
CAPN3-206ENST00000397163 SPATA31E1Q6ZUB1 1445 aa12.32□□□□□ -0.44
CAPN3-206ENST00000397163 MIA2Q96PC5 1412 aa12.32□□□□□ -0.44
CAPN3-206ENST00000397163 BRPF3Q9ULD4 1205 aa12.32□□□□□ -0.44
CAPN3-206ENST00000397163 NUP160Q12769 1436 aa12.31□□□□□ -0.44
CAPN3-206ENST00000397163 TEX14Q8IWB6 1497 aa12.31□□□□□ -0.44
CAPN3-206ENST00000397163 OSCARQ8IYS5 282 aa12.3□□□□□ -0.44
CAPN3-206ENST00000397163 RNF123Q5XPI4 1314 aa12.3□□□□□ -0.44
CAPN3-206ENST00000397163 NEFMP07197 916 aa12.3□□□□□ -0.44
CAPN3-206ENST00000397163 TMC1Q8TDI8 760 aa12.3□□□□□ -0.44
CAPN3-206ENST00000397163 CHD1O14646 1710 aa12.29□□□□□ -0.44
CAPN3-206ENST00000397163 EPRSP07814 1512 aaKnown RBP12.29□□□□□ -0.44
CAPN3-206ENST00000397163 DHX29Q7Z478 1369 aaKnown RBP12.29□□□□□ -0.44
CAPN3-206ENST00000397163 CDK13Q14004 1512 aaKnown RBP12.28□□□□□ -0.44
CAPN3-206ENST00000397163 DAPK1P53355 1430 aa12.27□□□□□ -0.45
CAPN3-206ENST00000397163 ROCK1Q13464 1354 aa12.27□□□□□ -0.45
CAPN3-206ENST00000397163 USP47Q96K76 1375 aa12.27□□□□□ -0.45
CAPN3-206ENST00000397163 CEP170Q5SW79 1584 aa12.27□□□□□ -0.45
CAPN3-206ENST00000397163 ZNF644Q9H582 1327 aaPredicted RBP12.27□□□□□ -0.45
CAPN3-206ENST00000397163 PNISRQ8TF01 805 aaKnown RBP12.26□□□□□ -0.45
CAPN3-206ENST00000397163 KIAA0586Q9BVV6 1533 aa12.25□□□□□ -0.45
CAPN3-206ENST00000397163 SHROOM2Q13796 1616 aa12.25□□□□□ -0.45
CAPN3-206ENST00000397163 ABCC5O15440 1437 aa12.25□□□□□ -0.45
CAPN3-206ENST00000397163 CLASP1Q7Z460 1538 aa12.24□□□□□ -0.45
CAPN3-206ENST00000397163 IQGAP2Q13576 1575 aa12.24□□□□□ -0.45
CAPN3-206ENST00000397163 RRP1P56182 461 aaKnown RBP12.21□□□□□ -0.46
CAPN3-206ENST00000397163 EXOC6Q8TAG9 804 aa12.21□□□□□ -0.46
CAPN3-206ENST00000397163 ARID4BQ4LE39 1312 aaPredicted RBP12.21□□□□□ -0.46
CAPN3-206ENST00000397163 PKD2Q13563 968 aa12.2□□□□□ -0.46
CAPN3-206ENST00000397163 ROCK2O75116 1388 aaKnown RBP12.2□□□□□ -0.46
CAPN3-206ENST00000397163 TCERG1O14776 1098 aaKnown RBP12.2□□□□□ -0.46
CAPN3-206ENST00000397163 CARD11Q9BXL7 1154 aa12.2□□□□□ -0.46
CAPN3-206ENST00000397163 POLR1AO95602 1720 aaPredicted RBP12.19□□□□□ -0.46
CAPN3-206ENST00000397163 KIF15Q9NS87 1388 aa12.19□□□□□ -0.46
CAPN3-206ENST00000397163 JPH4Q96JJ6 628 aa12.18□□□□□ -0.46
CAPN3-206ENST00000397163 RCAN3Q9UKA8 241 aa12.18□□□□□ -0.46
CAPN3-206ENST00000397163 PZPP20742 1482 aa12.18□□□□□ -0.46
CAPN3-206ENST00000397163 ZNF777Q9ULD5 760 aaPredicted RBP12.18□□□□□ -0.46
CAPN3-206ENST00000397163 PDE4AP27815 886 aa12.18□□□□□ -0.46
CAPN3-206ENST00000397163 KIAA1107Q9UPP5 1409 aa12.18□□□□□ -0.46
CAPN3-206ENST00000397163 CFDP1Q9UEE9 299 aaPredicted RBP12.17□□□□□ -0.46
CAPN3-206ENST00000397163 DNMT1P26358 1616 aaKnown RBP12.17□□□□□ -0.46
CAPN3-206ENST00000397163 BCORL1Q5H9F3 1711 aa12.17□□□□□ -0.46
CAPN3-206ENST00000397163 MYBBP1AQ9BQG0 1328 aaKnown RBP12.17□□□□□ -0.46
CAPN3-206ENST00000397163 MBD5Q9P267 1494 aa12.16□□□□□ -0.46
CAPN3-206ENST00000397163 RALBP1Q15311 655 aa12.16□□□□□ -0.46
CAPN3-206ENST00000397163 KDM2AQ9Y2K7 1162 aa12.16□□□□□ -0.46
CAPN3-206ENST00000397163 PKNOX2Q96KN3 472 aa12.16□□□□□ -0.46
CAPN3-206ENST00000397163 BRD4O60885 1362 aaPredicted RBP12.16□□□□□ -0.46
CAPN3-206ENST00000397163 LRPPRCP42704 1394 aaKnown RBP12.15□□□□□ -0.46
CAPN3-206ENST00000397163 ST20-MTHFSA0A0A6YYL1 179 aa12.15□□□□□ -0.46
Retrieved 100 of 20,778 RNA–protein pairs in 14.7 ms