RNA–Protein interactions for RNA: ENST00000378026.4

CKAP4-201, Transcript of cytoskeleton associated protein 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CKAP4, Length 3,093 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CKAP4-201ENST00000378026 EXOC6Q8TAG9 804 aa21.29■■□□□ 1
CKAP4-201ENST00000378026 TMC1Q8TDI8 760 aa21.29■■□□□ 1
CKAP4-201ENST00000378026 KDM6BO15054 1643 aa21.28■■□□□ 1
CKAP4-201ENST00000378026 RNF123Q5XPI4 1314 aa21.28■■□□□ 1
CKAP4-201ENST00000378026 CADPSQ9ULU8 1353 aa21.28■■□□□ 1
CKAP4-201ENST00000378026 PDE4AP27815 886 aa21.25■□□□□ 0.99
CKAP4-201ENST00000378026 SLC4A1APQ9BWU0 796 aaKnown RBP21.24■□□□□ 0.99
CKAP4-201ENST00000378026 SKAP1Q86WV1 359 aa21.22■□□□□ 0.99
CKAP4-201ENST00000378026 PNISRQ8TF01 805 aaKnown RBP21.21■□□□□ 0.99
CKAP4-201ENST00000378026 DHX29Q7Z478 1369 aaKnown RBP21.2■□□□□ 0.98
CKAP4-201ENST00000378026 SUPT6HQ7KZ85 1726 aaKnown RBP21.19■□□□□ 0.98
CKAP4-201ENST00000378026 RRP1P56182 461 aaKnown RBP21.18■□□□□ 0.98
CKAP4-201ENST00000378026 SPATA31E1Q6ZUB1 1445 aa21.18■□□□□ 0.98
CKAP4-201ENST00000378026 HECW1Q76N89 1606 aa21.17■□□□□ 0.98
CKAP4-201ENST00000378026 TCERG1O14776 1098 aaKnown RBP21.17■□□□□ 0.98
CKAP4-201ENST00000378026 LRRIQ1Q96JM4 1722 aa21.17■□□□□ 0.98
CKAP4-201ENST00000378026 ANKRD30BQ9BXX2 1392 aa21.17■□□□□ 0.98
CKAP4-201ENST00000378026 BRPF3Q9ULD4 1205 aa21.16■□□□□ 0.98
CKAP4-201ENST00000378026 BACH2Q9BYV9 841 aa21.15■□□□□ 0.98
CKAP4-201ENST00000378026 MAGI3Q5TCQ9 1506 aa21.14■□□□□ 0.97
CKAP4-201ENST00000378026 SLC4A3P48751 1232 aa21.13■□□□□ 0.97
CKAP4-201ENST00000378026 RCAN3Q9UKA8 241 aa21.13■□□□□ 0.97
CKAP4-201ENST00000378026 GRIN2BQ13224 1484 aa21.13■□□□□ 0.97
CKAP4-201ENST00000378026 RPRD2Q5VT52 1461 aaKnown RBP21.13■□□□□ 0.97
CKAP4-201ENST00000378026 EHBP1L1Q8N3D4 1523 aa21.13■□□□□ 0.97
CKAP4-201ENST00000378026 UGGT2Q9NYU1 1516 aa21.13■□□□□ 0.97
CKAP4-201ENST00000378026 CTTNBP2Q8WZ74 1663 aa21.12■□□□□ 0.97
CKAP4-201ENST00000378026 USP47Q96K76 1375 aa21.12■□□□□ 0.97
CKAP4-201ENST00000378026 PLIN1O60240 522 aa21.11■□□□□ 0.97
CKAP4-201ENST00000378026 TEX14Q8IWB6 1497 aa21.11■□□□□ 0.97
CKAP4-201ENST00000378026 FANCD2Q9BXW9 1451 aa21.11■□□□□ 0.97
CKAP4-201ENST00000378026 PPM1GO15355 546 aaPredicted RBP21.11■□□□□ 0.97
CKAP4-201ENST00000378026 USP35Q9P2H5 1018 aa21.11■□□□□ 0.97
CKAP4-201ENST00000378026 TDRD9Q8NDG6 1382 aaKnown RBP21.1■□□□□ 0.97
CKAP4-201ENST00000378026 PRDM2Q13029 1718 aa21.1■□□□□ 0.97
CKAP4-201ENST00000378026 POLA1P09884 1462 aaPredicted RBP21.1■□□□□ 0.97
CKAP4-201ENST00000378026 ZNF644Q9H582 1327 aaPredicted RBP21.09■□□□□ 0.97
CKAP4-201ENST00000378026 GCC2Q8IWJ2 1684 aa21.09■□□□□ 0.97
CKAP4-201ENST00000378026 ABCA10Q8WWZ4 1543 aa21.08■□□□□ 0.97
CKAP4-201ENST00000378026 EIF5BO60841 1220 aaKnown RBP21.08■□□□□ 0.96
CKAP4-201ENST00000378026 CDCA7LQ96GN5 454 aa21.06■□□□□ 0.96
CKAP4-201ENST00000378026 WASHC2CQ9Y4E1 1318 aa21.04■□□□□ 0.96
CKAP4-201ENST00000378026 TCOF1Q13428 1488 aaKnown RBP21.04■□□□□ 0.96
CKAP4-201ENST00000378026 GSE1Q14687 1217 aa21.03■□□□□ 0.96
CKAP4-201ENST00000378026 KDM2AQ9Y2K7 1162 aa21.03■□□□□ 0.96
CKAP4-201ENST00000378026 BCORL1Q5H9F3 1711 aa21.01■□□□□ 0.95
CKAP4-201ENST00000378026 ABCA5Q8WWZ7 1642 aa21.01■□□□□ 0.95
CKAP4-201ENST00000378026 NFKBIBQ15653 356 aa21.01■□□□□ 0.95
CKAP4-201ENST00000378026 CARD11Q9BXL7 1154 aa21.01■□□□□ 0.95
CKAP4-201ENST00000378026 MS4A1P11836 297 aa21.01■□□□□ 0.95
CKAP4-201ENST00000378026 MIA2Q96PC5 1412 aa21.01■□□□□ 0.95
CKAP4-201ENST00000378026 DAXXQ9UER7 740 aaPredicted RBP21.01■□□□□ 0.95
CKAP4-201ENST00000378026 CUL7Q14999 1698 aa21■□□□□ 0.95
CKAP4-201ENST00000378026 TOPBP1Q92547 1522 aa21■□□□□ 0.95
CKAP4-201ENST00000378026 ARHGEF11O15085 1522 aa21■□□□□ 0.95
CKAP4-201ENST00000378026 CC2D2AQ9P2K1 1620 aa21■□□□□ 0.95
CKAP4-201ENST00000378026 FRAT1Q92837 279 aaPredicted RBP20.99■□□□□ 0.95
CKAP4-201ENST00000378026 CDK13Q14004 1512 aaKnown RBP20.98■□□□□ 0.95
CKAP4-201ENST00000378026 SAMD9Q5K651 1589 aa20.98■□□□□ 0.95
CKAP4-201ENST00000378026 CRBNQ96SW2 442 aa20.98■□□□□ 0.95
CKAP4-201ENST00000378026 ST20-MTHFSA0A0A6YYL1 179 aa20.97■□□□□ 0.95
CKAP4-201ENST00000378026 MYBBP1AQ9BQG0 1328 aaKnown RBP20.97■□□□□ 0.95
CKAP4-201ENST00000378026 DDRGK1Q96HY6 314 aa20.97■□□□□ 0.95
CKAP4-201ENST00000378026 PKD2Q13563 968 aa20.96■□□□□ 0.95
CKAP4-201ENST00000378026 KIF15Q9NS87 1388 aa20.96■□□□□ 0.95
CKAP4-201ENST00000378026 DNMBPQ6XZF7 1577 aa20.96■□□□□ 0.95
CKAP4-201ENST00000378026 POLR1AO95602 1720 aaPredicted RBP20.95■□□□□ 0.94
CKAP4-201ENST00000378026 DAPK1P53355 1430 aa20.95■□□□□ 0.94
CKAP4-201ENST00000378026 LRPPRCP42704 1394 aaKnown RBP20.95■□□□□ 0.94
CKAP4-201ENST00000378026 ZNF777Q9ULD5 760 aaPredicted RBP20.93■□□□□ 0.94
CKAP4-201ENST00000378026 ABCC5O15440 1437 aa20.92■□□□□ 0.94
CKAP4-201ENST00000378026 THOC2Q8NI27 1593 aaKnown RBP20.92■□□□□ 0.94
CKAP4-201ENST00000378026 EPRSP07814 1512 aaKnown RBP20.92■□□□□ 0.94
CKAP4-201ENST00000378026 BRD4O60885 1362 aaPredicted RBP20.92■□□□□ 0.94
CKAP4-201ENST00000378026 NESP48681 1621 aa20.91■□□□□ 0.94
CKAP4-201ENST00000378026 RALBP1Q15311 655 aa20.91■□□□□ 0.94
CKAP4-201ENST00000378026 C20orf194Q5TEA3 1177 aa20.9■□□□□ 0.94
CKAP4-201ENST00000378026 ROCK2O75116 1388 aaKnown RBP20.88■□□□□ 0.93
CKAP4-201ENST00000378026 ARID4BQ4LE39 1312 aaPredicted RBP20.88■□□□□ 0.93
CKAP4-201ENST00000378026 CC2D1BQ5T0F9 858 aaKnown RBP20.87■□□□□ 0.93
CKAP4-201ENST00000378026 ROCK1Q13464 1354 aa20.87■□□□□ 0.93
CKAP4-201ENST00000378026 FRAT2O75474 233 aaPredicted RBP20.86■□□□□ 0.93
CKAP4-201ENST00000378026 GAPVD1Q14C86 1478 aa20.86■□□□□ 0.93
CKAP4-201ENST00000378026 NLRP13Q86W25 1043 aa20.86■□□□□ 0.93
CKAP4-201ENST00000378026 PZPP20742 1482 aa20.85■□□□□ 0.93
CKAP4-201ENST00000378026 PDE3BQ13370 1112 aa20.85■□□□□ 0.93
CKAP4-201ENST00000378026 DCAF11Q8TEB1 546 aa20.85■□□□□ 0.93
CKAP4-201ENST00000378026 RGS3P49796 1198 aa20.83■□□□□ 0.93
CKAP4-201ENST00000378026 KDM5CP41229 1560 aa20.83■□□□□ 0.92
CKAP4-201ENST00000378026 MBD5Q9P267 1494 aa20.81■□□□□ 0.92
CKAP4-201ENST00000378026 KIAA1107Q9UPP5 1409 aa20.81■□□□□ 0.92
CKAP4-201ENST00000378026 UBE2Q2Q8WVN8 375 aa20.8■□□□□ 0.92
CKAP4-201ENST00000378026 KTN1Q86UP2 1357 aaKnown RBP20.8■□□□□ 0.92
CKAP4-201ENST00000378026 CFDP1Q9UEE9 299 aaPredicted RBP20.79■□□□□ 0.92
CKAP4-201ENST00000378026 FAM161AQ3B820 660 aa20.75■□□□□ 0.91
CKAP4-201ENST00000378026 KIF14Q15058 1648 aa20.75■□□□□ 0.91
CKAP4-201ENST00000378026 URB2Q14146 1524 aaKnown RBP20.74■□□□□ 0.91
CKAP4-201ENST00000378026 DNMT1P26358 1616 aaKnown RBP20.74■□□□□ 0.91
CKAP4-201ENST00000378026 LAMC3Q9Y6N6 1575 aa20.74■□□□□ 0.91
CKAP4-201ENST00000378026 C8orf34Q49A92 452 aa20.74■□□□□ 0.91
Retrieved 100 of 20,778 RNA–protein pairs in 65.8 ms