RNA–Protein interactions for RNA: ENST00000355430.4

COLCA1-201, Transcript of colorectal cancer associated 1, humanhuman

TSL 1 (best)

Gene COLCA1, Length 5,442 nt, Biotype antisense RNA, Subcellular localisation Cytoplasm, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COLCA1-201ENST00000355430 L3MBTL2Q969R5 705 aa16.13■□□□□ 0.17
COLCA1-201ENST00000355430 CFAP53Q96M91 514 aa16.13■□□□□ 0.17
COLCA1-201ENST00000355430 ARXQ96QS3 562 aa16.13■□□□□ 0.17
COLCA1-201ENST00000355430 CCDC18Q5T9S5 1454 aa16.13■□□□□ 0.17
COLCA1-201ENST00000355430 DCAF11Q8TEB1 546 aa16.11■□□□□ 0.17
COLCA1-201ENST00000355430 ANKRD30AQ9BXX3 1397 aa16.11■□□□□ 0.17
COLCA1-201ENST00000355430 ARAP1Q96P48 1450 aa16.1■□□□□ 0.17
COLCA1-201ENST00000355430 WASHC2CQ9Y4E1 1318 aa16.1■□□□□ 0.17
COLCA1-201ENST00000355430 KNSTRNQ9Y448 316 aa16.09■□□□□ 0.17
COLCA1-201ENST00000355430 RRBP1Q9P2E9 1410 aaKnown RBP16.08■□□□□ 0.17
COLCA1-201ENST00000355430 AQRO60306 1485 aaKnown RBP eCLIP16.08■□□□□ 0.16
COLCA1-201ENST00000355430 PHLDB1Q86UU1 1377 aa16.08■□□□□ 0.16
COLCA1-201ENST00000355430 IFT140Q96RY7 1462 aa16.08■□□□□ 0.16
COLCA1-201ENST00000355430 HSP90AA1P07900 732 aaKnown RBP16.08■□□□□ 0.16
COLCA1-201ENST00000355430 PKD2Q13563 968 aa16.08■□□□□ 0.16
COLCA1-201ENST00000355430 PPM1GO15355 546 aaPredicted RBP16.08■□□□□ 0.16
COLCA1-201ENST00000355430 RAD54L2Q9Y4B4 1467 aa16.07■□□□□ 0.16
COLCA1-201ENST00000355430 GRIN2BQ13224 1484 aa16.07■□□□□ 0.16
COLCA1-201ENST00000355430 IGF1RP08069 1367 aa16.06■□□□□ 0.16
COLCA1-201ENST00000355430 ERICH3Q5RHP9 1530 aa16.06■□□□□ 0.16
COLCA1-201ENST00000355430 HMGXB3Q12766 1538 aa16.06■□□□□ 0.16
COLCA1-201ENST00000355430 HNRNPMP52272 730 aaKnown RBP eCLIP16.05■□□□□ 0.16
COLCA1-201ENST00000355430 RTN4Q9NQC3 1192 aaKnown RBP16.05■□□□□ 0.16
COLCA1-201ENST00000355430 LRRC9Q6ZRR7 1453 aa16.04■□□□□ 0.16
COLCA1-201ENST00000355430 RGS3P49796 1198 aa16.03■□□□□ 0.16
COLCA1-201ENST00000355430 NUDCQ9Y266 331 aa16.03■□□□□ 0.16
COLCA1-201ENST00000355430 NESP48681 1621 aa16.02■□□□□ 0.16
COLCA1-201ENST00000355430 SRPK2P78362 688 aaKnown RBP16.02■□□□□ 0.15
COLCA1-201ENST00000355430 DNAJC5BQ9UF47 199 aa16.02■□□□□ 0.15
COLCA1-201ENST00000355430 BECN1Q14457 450 aa16.01■□□□□ 0.15
COLCA1-201ENST00000355430 CFTRP13569 1480 aa15.99■□□□□ 0.15
COLCA1-201ENST00000355430 PRKRIP1Q9H875 184 aaPredicted RBP15.99■□□□□ 0.15
COLCA1-201ENST00000355430 NPHP1O15259 732 aa15.98■□□□□ 0.15
COLCA1-201ENST00000355430 RCAN3Q9UKA8 241 aa15.98■□□□□ 0.15
COLCA1-201ENST00000355430 NUP155O75694 1391 aa15.98■□□□□ 0.15
COLCA1-201ENST00000355430 TOP2BQ02880 1626 aa15.98■□□□□ 0.15
COLCA1-201ENST00000355430 STK26Q9P289 416 aa15.98■□□□□ 0.15
COLCA1-201ENST00000355430 KTN1Q86UP2 1357 aaKnown RBP15.98■□□□□ 0.15
COLCA1-201ENST00000355430 PRXQ9BXM0 1461 aa15.97■□□□□ 0.15
COLCA1-201ENST00000355430 FGD6Q6ZV73 1430 aa15.97■□□□□ 0.15
COLCA1-201ENST00000355430 TMF1P82094 1093 aa15.97■□□□□ 0.15
COLCA1-201ENST00000355430 ANP32BQ92688 251 aaKnown RBP15.97■□□□□ 0.15
COLCA1-201ENST00000355430 NEUROD2Q15784 382 aa15.96■□□□□ 0.15
COLCA1-201ENST00000355430 SAFB2Q14151 953 aaKnown RBP eCLIP15.95■□□□□ 0.14
COLCA1-201ENST00000355430 ROCK2O75116 1388 aaKnown RBP15.95■□□□□ 0.14
COLCA1-201ENST00000355430 RALBP1Q15311 655 aa15.95■□□□□ 0.14
COLCA1-201ENST00000355430 ZBED9Q6R2W3 1325 aa15.94■□□□□ 0.14
COLCA1-201ENST00000355430 IPO9Q96P70 1041 aaKnown RBP15.94■□□□□ 0.14
COLCA1-201ENST00000355430 MAPK8IP3Q9UPT6 1336 aa15.93■□□□□ 0.14
COLCA1-201ENST00000355430 PAK3O75914 559 aaPredicted RBP15.93■□□□□ 0.14
COLCA1-201ENST00000355430 UACAQ9BZF9 1416 aa15.93■□□□□ 0.14
COLCA1-201ENST00000355430 HDGFL2Q7Z4V5 671 aaPredicted RBP15.92■□□□□ 0.14
COLCA1-201ENST00000355430 FANCIQ9NVI1 1328 aa15.92■□□□□ 0.14
COLCA1-201ENST00000355430 FRAT1Q92837 279 aaPredicted RBP15.92■□□□□ 0.14
COLCA1-201ENST00000355430 CCDC9Q9Y3X0 531 aaKnown RBP15.92■□□□□ 0.14
COLCA1-201ENST00000355430 TCERG1O14776 1098 aaKnown RBP15.91■□□□□ 0.14
COLCA1-201ENST00000355430 PRG4Q92954 1404 aaPredicted RBP15.91■□□□□ 0.14
COLCA1-201ENST00000355430 MYH16Q9H6N6 1097 aa15.91■□□□□ 0.14
COLCA1-201ENST00000355430 WDR97A6NE52 1622 aa15.9■□□□□ 0.14
COLCA1-201ENST00000355430 PNNQ9H307 717 aaKnown RBP15.9■□□□□ 0.14
COLCA1-201ENST00000355430 TNNT2P45379 298 aaPredicted RBP15.89■□□□□ 0.13
COLCA1-201ENST00000355430 CSB-PGBD3P0DP91 1061 aa15.89■□□□□ 0.13
COLCA1-201ENST00000355430 MYOM3Q5VTT5 1437 aa15.89■□□□□ 0.13
COLCA1-201ENST00000355430 CUX1P39880 1505 aa15.89■□□□□ 0.13
COLCA1-201ENST00000355430 SOX12O15370 315 aa15.88■□□□□ 0.13
COLCA1-201ENST00000355430 TIAM1Q13009 1591 aa15.88■□□□□ 0.13
COLCA1-201ENST00000355430 LAMC3Q9Y6N6 1575 aa15.88■□□□□ 0.13
COLCA1-201ENST00000355430 WASHC2AQ641Q2 1341 aa15.87■□□□□ 0.13
COLCA1-201ENST00000355430 CASKIN1Q8WXD9 1431 aa15.87■□□□□ 0.13
COLCA1-201ENST00000355430 CNTLNQ9NXG0 1405 aa15.86■□□□□ 0.13
COLCA1-201ENST00000355430 CCDC7Q96M83 1385 aa15.86■□□□□ 0.13
COLCA1-201ENST00000355430 FTSJ3Q8IY81 847 aaKnown RBP15.86■□□□□ 0.13
COLCA1-201ENST00000355430 TOPBP1Q92547 1522 aa15.86■□□□□ 0.13
COLCA1-201ENST00000355430 KIF15Q9NS87 1388 aa15.85■□□□□ 0.13
COLCA1-201ENST00000355430 USP47Q96K76 1375 aa15.84■□□□□ 0.13
COLCA1-201ENST00000355430 NCOA2Q15596 1464 aa15.84■□□□□ 0.13
COLCA1-201ENST00000355430 EIF3AQ14152 1382 aaKnown RBP15.83■□□□□ 0.13
COLCA1-201ENST00000355430 FYCO1Q9BQS8 1478 aa15.83■□□□□ 0.13
COLCA1-201ENST00000355430 MYBBP1AQ9BQG0 1328 aaKnown RBP15.83■□□□□ 0.12
COLCA1-201ENST00000355430 SNAPC4Q5SXM2 1469 aa15.83■□□□□ 0.12
COLCA1-201ENST00000355430 ST20-MTHFSA0A0A6YYL1 179 aa15.83■□□□□ 0.12
COLCA1-201ENST00000355430 NLRP13Q86W25 1043 aa15.83■□□□□ 0.12
COLCA1-201ENST00000355430 KIF7Q2M1P5 1343 aa15.82■□□□□ 0.12
COLCA1-201ENST00000355430 SYNJ2O15056 1496 aa15.82■□□□□ 0.12
COLCA1-201ENST00000355430 NGDNQ8NEJ9 315 aaKnown RBP15.82■□□□□ 0.12
COLCA1-201ENST00000355430 EXOC6Q8TAG9 804 aa15.81■□□□□ 0.12
COLCA1-201ENST00000355430 BICRAQ9NZM4 1560 aa15.81■□□□□ 0.12
COLCA1-201ENST00000355430 U2SURPO15042 1029 aaKnown RBP15.8■□□□□ 0.12
COLCA1-201ENST00000355430 GLIPR1L2Q4G1C9 344 aa15.8■□□□□ 0.12
COLCA1-201ENST00000355430 RRP1P56182 461 aaKnown RBP15.79■□□□□ 0.12
COLCA1-201ENST00000355430 PRDM2Q13029 1718 aa15.79■□□□□ 0.12
COLCA1-201ENST00000355430 PDE3BQ13370 1112 aa15.79■□□□□ 0.12
COLCA1-201ENST00000355430 NUTM2DQ5VT03 806 aaPredicted RBP15.79■□□□□ 0.12
COLCA1-201ENST00000355430 DNMBPQ6XZF7 1577 aa15.78■□□□□ 0.12
COLCA1-201ENST00000355430 ABCF1Q8NE71 845 aaKnown RBP eCLIP15.78■□□□□ 0.12
COLCA1-201ENST00000355430 VGFO15240 615 aaPredicted RBP15.78■□□□□ 0.12
COLCA1-201ENST00000355430 MORC1Q86VD1 984 aa15.77■□□□□ 0.12
COLCA1-201ENST00000355430 PLIN1O60240 522 aa15.77■□□□□ 0.12
COLCA1-201ENST00000355430 POLA1P09884 1462 aaPredicted RBP15.77■□□□□ 0.11
COLCA1-201ENST00000355430 MEX3CQ5U5Q3 659 aaKnown RBP15.77■□□□□ 0.11
Retrieved 100 of 20,778 RNA–protein pairs in 36.2 ms