RNA–Protein interactions for RNA: ENST00000355430.4

COLCA1-201, Transcript of colorectal cancer associated 1, humanhuman

TSL 1 (best)

Gene COLCA1, Length 5,442 nt, Biotype antisense RNA, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COLCA1-201ENST00000355430 DCAF8L2P0C7V8 631 aa22.02■■□□□ 1.12
COLCA1-201ENST00000355430 NISCHQ9Y2I1 1504 aa21.92■■□□□ 1.1
COLCA1-201ENST00000355430 SUPT5HO00267 1087 aaKnown RBP20.63■□□□□ 0.89
COLCA1-201ENST00000355430 SHROOM4Q9ULL8 1493 aa20.53■□□□□ 0.88
COLCA1-201ENST00000355430 PCGF6Q9BYE7 350 aa19.65■□□□□ 0.74
COLCA1-201ENST00000355430 EHMT2Q96KQ7 1210 aa19.62■□□□□ 0.73
COLCA1-201ENST00000355430 FAM9AQ8IZU1 332 aaPredicted RBP19.62■□□□□ 0.73
COLCA1-201ENST00000355430 APLP2Q06481 763 aa19.22■□□□□ 0.67
COLCA1-201ENST00000355430 ABCC9O60706 1549 aa19.2■□□□□ 0.66
COLCA1-201ENST00000355430 HRCP23327 699 aa19.14■□□□□ 0.65
COLCA1-201ENST00000355430 TRIM41Q8WV44 630 aa19.07■□□□□ 0.64
COLCA1-201ENST00000355430 CHIC1Q5VXU3 224 aa19.06■□□□□ 0.64
COLCA1-201ENST00000355430 ZEB1P37275 1124 aaPredicted RBP19.03■□□□□ 0.64
COLCA1-201ENST00000355430 TTBK1Q5TCY1 1321 aaPredicted RBP19.02■□□□□ 0.63
COLCA1-201ENST00000355430 LOC105371045A0A1W2PR82 267 aa18.91■□□□□ 0.62
COLCA1-201ENST00000355430 TRIM26Q12899 539 aaPredicted RBP18.89■□□□□ 0.61
COLCA1-201ENST00000355430 PPARGC1BQ86YN6 1023 aaKnown RBP18.85■□□□□ 0.61
COLCA1-201ENST00000355430 CCER1Q8TC90 406 aaPredicted RBP18.84■□□□□ 0.61
COLCA1-201ENST00000355430 PABPN1Q86U42 306 aaKnown RBP eCLIP18.83■□□□□ 0.6
COLCA1-201ENST00000355430 RANGAP1P46060 587 aaPredicted RBP18.79■□□□□ 0.6
COLCA1-201ENST00000355430 ATP1B4Q9UN42 357 aaPredicted RBP18.78■□□□□ 0.6
COLCA1-201ENST00000355430 CENPBP07199 599 aaPredicted RBP18.71■□□□□ 0.59
COLCA1-201ENST00000355430 PELP1Q8IZL8 1130 aaKnown RBP18.66■□□□□ 0.58
COLCA1-201ENST00000355430 UBTFP17480 764 aaKnown RBP18.63■□□□□ 0.57
COLCA1-201ENST00000355430 YTHDC1Q96MU7 727 aaKnown RBP18.47■□□□□ 0.55
COLCA1-201ENST00000355430 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP18.41■□□□□ 0.54
COLCA1-201ENST00000355430 HNRNPUL2Q1KMD3 747 aaKnown RBP18.41■□□□□ 0.54
COLCA1-201ENST00000355430 MYT1LQ9UL68 1186 aa18.4■□□□□ 0.54
COLCA1-201ENST00000355430 ZCCHC6Q5VYS8 1495 aaKnown RBP18.36■□□□□ 0.53
COLCA1-201ENST00000355430 MYO15BQ96JP2 1530 aa18.22■□□□□ 0.51
COLCA1-201ENST00000355430 CCDC180Q9P1Z9 1646 aa18.22■□□□□ 0.51
COLCA1-201ENST00000355430 DCAF1Q9Y4B6 1507 aa18.16■□□□□ 0.5
COLCA1-201ENST00000355430 FBLN2P98095 1184 aa18.14■□□□□ 0.49
COLCA1-201ENST00000355430 DIEXFQ68CQ4 756 aaKnown RBP18.14■□□□□ 0.49
COLCA1-201ENST00000355430 MYT1Q01538 1121 aa18.09■□□□□ 0.49
COLCA1-201ENST00000355430 SCRIBQ14160 1630 aa18.09■□□□□ 0.49
COLCA1-201ENST00000355430 RB1CC1Q8TDY2 1594 aa18.07■□□□□ 0.48
COLCA1-201ENST00000355430 ITGAEP38570 1179 aa17.95■□□□□ 0.46
COLCA1-201ENST00000355430 NEFLP07196 543 aa17.93■□□□□ 0.46
COLCA1-201ENST00000355430 GTF3C3Q9Y5Q9 886 aa17.93■□□□□ 0.46
COLCA1-201ENST00000355430 ERICH6Q7L0X2 663 aa17.92■□□□□ 0.46
COLCA1-201ENST00000355430 ACIN1Q9UKV3 1341 aaKnown RBP17.83■□□□□ 0.45
COLCA1-201ENST00000355430 NACADO15069 1562 aa17.8■□□□□ 0.44
COLCA1-201ENST00000355430 ZNF316A6NFI3 1004 aaPredicted RBP17.77■□□□□ 0.44
COLCA1-201ENST00000355430 NPM1P06748 294 aaKnown RBP eCLIP17.71■□□□□ 0.43
COLCA1-201ENST00000355430 SCAF1Q9H7N4 1312 aaKnown RBP17.68■□□□□ 0.42
COLCA1-201ENST00000355430 CSRNP3Q8WYN3 585 aa17.66■□□□□ 0.42
COLCA1-201ENST00000355430 RSF1Q96T23 1441 aaPredicted RBP17.62■□□□□ 0.41
COLCA1-201ENST00000355430 NEUROD1Q13562 356 aa17.59■□□□□ 0.41
COLCA1-201ENST00000355430 FAM50AQ14320 339 aaKnown RBP17.55■□□□□ 0.4
COLCA1-201ENST00000355430 CDK11AQ9UQ88 783 aaPredicted RBP17.54■□□□□ 0.4
COLCA1-201ENST00000355430 ESF1Q9H501 851 aaKnown RBP17.52■□□□□ 0.4
COLCA1-201ENST00000355430 ERCC6Q03468 1493 aa17.51■□□□□ 0.39
COLCA1-201ENST00000355430 CHMP7Q8WUX9 453 aaPredicted RBP17.51■□□□□ 0.39
COLCA1-201ENST00000355430 BCANQ96GW7 911 aa17.49■□□□□ 0.39
COLCA1-201ENST00000355430 P3H3Q8IVL6 736 aa17.46■□□□□ 0.39
COLCA1-201ENST00000355430 POLR3GLQ9BT43 218 aa17.46■□□□□ 0.39
COLCA1-201ENST00000355430 ARID3CA6NKF2 412 aa17.45■□□□□ 0.38
COLCA1-201ENST00000355430 TRIM52Q96A61 297 aa17.45■□□□□ 0.38
COLCA1-201ENST00000355430 SLC4A1APQ9BWU0 796 aaKnown RBP17.43■□□□□ 0.38
COLCA1-201ENST00000355430 BAZ1BQ9UIG0 1483 aaKnown RBP17.42■□□□□ 0.38
COLCA1-201ENST00000355430 CNGB1Q14028 1251 aaPredicted RBP17.39■□□□□ 0.38
COLCA1-201ENST00000355430 ZNF777Q9ULD5 760 aaPredicted RBP17.34■□□□□ 0.37
COLCA1-201ENST00000355430 CEP162Q5TB80 1403 aa17.34■□□□□ 0.37
COLCA1-201ENST00000355430 MIER1Q8N108 512 aa17.33■□□□□ 0.36
COLCA1-201ENST00000355430 ANP32CO43423 234 aa17.31■□□□□ 0.36
COLCA1-201ENST00000355430 CECR2Q9BXF3 1484 aa17.23■□□□□ 0.35
COLCA1-201ENST00000355430 CLIP1P30622 1438 aa17.22■□□□□ 0.35
COLCA1-201ENST00000355430 PLPPR3Q6T4P5 718 aa17.22■□□□□ 0.35
COLCA1-201ENST00000355430 GOLGA3Q08378 1498 aa17.21■□□□□ 0.35
COLCA1-201ENST00000355430 STAG3Q9UJ98 1225 aa17.2■□□□□ 0.34
COLCA1-201ENST00000355430 BAZ1AQ9NRL2 1556 aaPredicted RBP17.17■□□□□ 0.34
COLCA1-201ENST00000355430 TNIKQ9UKE5 1360 aa17.17■□□□□ 0.34
COLCA1-201ENST00000355430 CLSPNQ9HAW4 1339 aa17.17■□□□□ 0.34
COLCA1-201ENST00000355430 EEA1Q15075 1411 aa17.17■□□□□ 0.34
COLCA1-201ENST00000355430 FKBP8Q14318 412 aa17.14■□□□□ 0.33
COLCA1-201ENST00000355430 DDX10Q13206 875 aaKnown RBP17.12■□□□□ 0.33
COLCA1-201ENST00000355430 ZNF326Q5BKZ1 582 aaKnown RBP17.1■□□□□ 0.33
COLCA1-201ENST00000355430 MROH2BQ7Z745 1585 aa17.09■□□□□ 0.33
COLCA1-201ENST00000355430 WRNQ14191 1432 aaPredicted RBP eCLIP17.08■□□□□ 0.32
COLCA1-201ENST00000355430 PDS5BQ9NTI5 1447 aa17.07■□□□□ 0.32
COLCA1-201ENST00000355430 DAXXQ9UER7 740 aaPredicted RBP17.07■□□□□ 0.32
COLCA1-201ENST00000355430 SOGA1O94964 1423 aa17.05■□□□□ 0.32
COLCA1-201ENST00000355430 TRHP20396 242 aaPredicted RBP17.05■□□□□ 0.32
COLCA1-201ENST00000355430 CHGAP10645 457 aaKnown RBP17.03■□□□□ 0.32
COLCA1-201ENST00000355430 SMARCA2P51531 1590 aa17.02■□□□□ 0.32
COLCA1-201ENST00000355430 CEP164Q9UPV0 1460 aa17.02■□□□□ 0.31
COLCA1-201ENST00000355430 KCNH8Q96L42 1107 aa17.02■□□□□ 0.31
COLCA1-201ENST00000355430 ABCC8Q09428 1581 aa17.01■□□□□ 0.31
COLCA1-201ENST00000355430 RTL5Q5HYW3 569 aaPredicted RBP17.01■□□□□ 0.31
COLCA1-201ENST00000355430 TSPY4P0CV99 314 aa17.01■□□□□ 0.31
COLCA1-201ENST00000355430 TSPY10P0CW01 314 aa17.01■□□□□ 0.31
COLCA1-201ENST00000355430 TONSLQ96HA7 1378 aa17■□□□□ 0.31
COLCA1-201ENST00000355430 PLEKHD1A6NEE1 506 aa17■□□□□ 0.31
COLCA1-201ENST00000355430 KIF27Q86VH2 1401 aa16.96■□□□□ 0.31
COLCA1-201ENST00000355430 ARID4BQ4LE39 1312 aaPredicted RBP16.96■□□□□ 0.31
COLCA1-201ENST00000355430 WIZO95785 1651 aa16.96■□□□□ 0.31
COLCA1-201ENST00000355430 CCDC88BA6NC98 1476 aa16.95■□□□□ 0.3
COLCA1-201ENST00000355430 HIRIP3Q9BW71 556 aaPredicted RBP16.95■□□□□ 0.3
COLCA1-201ENST00000355430 HNRNPUQ00839 825 aaKnown RBP eCLIP16.94■□□□□ 0.3
Retrieved 100 of 20,778 RNA–protein pairs in 38.5 ms