RNA–Protein interactions for RNA: YLR412W

BER1, Transcript of Protein involved in microtubule-related processes, yeast

Gene BER1, Length 825 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
BER1	YLR412W	SSH4	P32343	579 aa		2.79	□□□□□ -1.96
BER1	YLR412W	TIF5	P38431	405 aa	Known RBP	2.79	□□□□□ -1.96
BER1	YLR412W	SHO1	P40073	367 aa		2.79	□□□□□ -1.96
BER1	YLR412W	WSC2	P53832	503 aa		2.79	□□□□□ -1.96
BER1	YLR412W	NGL3	Q03210	505 aa		2.79	□□□□□ -1.96
BER1	YLR412W	SMA2	Q04658	369 aa		2.79	□□□□□ -1.96
BER1	YLR412W	IVY1	Q04934	453 aa		2.79	□□□□□ -1.96
BER1	YLR412W	HUA2	Q12134	243 aa		2.79	□□□□□ -1.96
BER1	YLR412W	YCR007C	P25354	239 aa		2.78	□□□□□ -1.96
BER1	YLR412W	DPB3	P27344	201 aa		2.78	□□□□□ -1.96
BER1	YLR412W	SAC6	P32599	642 aa	Known RBP	2.78	□□□□□ -1.96
BER1	YLR412W	TUL1	P36096	758 aa		2.78	□□□□□ -1.96
BER1	YLR412W	YBP1	P38315	674 aa		2.78	□□□□□ -1.96
BER1	YLR412W	CCT6	P39079	546 aa		2.78	□□□□□ -1.96
BER1	YLR412W	ALG8	P40351	577 aa		2.78	□□□□□ -1.96
BER1	YLR412W	IDP2	P41939	412 aa		2.78	□□□□□ -1.96
BER1	YLR412W	SPG5	P42933	373 aa		2.78	□□□□□ -1.96
BER1	YLR412W	COQ9	Q05779	260 aa		2.78	□□□□□ -1.96
BER1	YLR412W	NOP58	Q12499	511 aa	Known RBP	2.78	□□□□□ -1.96
BER1	YLR412W	SUC2	P00724	532 aa		2.77	□□□□□ -1.97
BER1	YLR412W	ATR1	P13090	542 aa		2.77	□□□□□ -1.97
BER1	YLR412W	UTR4	P32626	227 aa		2.77	□□□□□ -1.97
BER1	YLR412W	SHP1	P34223	423 aa		2.77	□□□□□ -1.97
BER1	YLR412W	ALG5	P40350	334 aa		2.77	□□□□□ -1.97
BER1	YLR412W	YPI1	P43587	155 aa		2.77	□□□□□ -1.97
BER1	YLR412W	IRC15	Q02733	499 aa		2.77	□□□□□ -1.97
BER1	YLR412W	RPC11	Q04307	110 aa	Predicted RBP	2.77	□□□□□ -1.97
BER1	YLR412W	PHO92	Q06390	306 aa		2.77	□□□□□ -1.97
BER1	YLR412W	YEH1	Q07804	573 aa		2.77	□□□□□ -1.97
BER1	YLR412W	THP1	Q08231	455 aa		2.77	□□□□□ -1.97
BER1	YLR412W	YCL021W-A	Q96VH3	125 aa		2.77	□□□□□ -1.97
BER1	YLR412W	REV1	P12689	985 aa		2.76	□□□□□ -1.97
BER1	YLR412W	SEF1	P34228	1148 aa		2.76	□□□□□ -1.97
BER1	YLR412W	BNA4	P38169	460 aa		2.76	□□□□□ -1.97
BER1	YLR412W	TIF4631	P39935	952 aa	Known RBP	2.76	□□□□□ -1.97
BER1	YLR412W	HAT2	P39984	401 aa		2.76	□□□□□ -1.97
BER1	YLR412W	IMD4	P50094	524 aa	Known RBP	2.76	□□□□□ -1.97
BER1	YLR412W	TOF2	Q02208	771 aa		2.76	□□□□□ -1.97
BER1	YLR412W	VPS74	Q06385	345 aa		2.76	□□□□□ -1.97
BER1	YLR412W	LSP1	Q12230	341 aa	Known RBP	2.76	□□□□□ -1.97
BER1	YLR412W	CTF3	Q12748	733 aa		2.76	□□□□□ -1.97
BER1	YLR412W	YPT6	Q99260	215 aa		2.76	□□□□□ -1.97
BER1	YLR412W	ELO2	P25358	347 aa		2.75	□□□□□ -1.97
BER1	YLR412W	PUT3	P25502	979 aa	Predicted RBP	2.75	□□□□□ -1.97
BER1	YLR412W	DUG2	P38149	878 aa		2.75	□□□□□ -1.97
BER1	YLR412W	TCM62	P38228	572 aa	Known RBP	2.75	□□□□□ -1.97
BER1	YLR412W	SLX1	P38324	304 aa		2.75	□□□□□ -1.97
BER1	YLR412W	FLC2	P39719	783 aa		2.75	□□□□□ -1.97
BER1	YLR412W	ALK1	P43633	760 aa	Known RBP	2.75	□□□□□ -1.97
BER1	YLR412W	VID30	P53076	958 aa		2.75	□□□□□ -1.97
BER1	YLR412W	NMD4	Q12129	218 aa		2.75	□□□□□ -1.97
BER1	YLR412W	SEC53	P07283	254 aa	Known RBP	2.74	□□□□□ -1.97
BER1	YLR412W	PMR1	P13586	950 aa		2.74	□□□□□ -1.97
BER1	YLR412W	EXO70	P19658	623 aa		2.74	□□□□□ -1.97
BER1	YLR412W	FUN19	P28003	413 aa	Predicted RBP	2.74	□□□□□ -1.97
BER1	YLR412W	MSN2	P33748	704 aa		2.74	□□□□□ -1.97
BER1	YLR412W	SWH1	P35845	1188 aa		2.74	□□□□□ -1.97
BER1	YLR412W	MSR1	P38714	643 aa		2.74	□□□□□ -1.97
BER1	YLR412W	SGN1	P40561	250 aa	Known RBP RIP-Chip data	2.74	□□□□□ -1.97	not detected
BER1	YLR412W	AIM22	P47051	409 aa		2.74	□□□□□ -1.97
BER1	YLR412W	RBG2	P53295	368 aa	Known RBP	2.74	□□□□□ -1.97
BER1	YLR412W	ZPR1	P53303	486 aa	Known RBP	2.74	□□□□□ -1.97
BER1	YLR412W	GPI1	P53306	609 aa		2.74	□□□□□ -1.97
BER1	YLR412W	MSO1	P53604	210 aa	Known RBP	2.74	□□□□□ -1.97
BER1	YLR412W	HNT3	Q08702	217 aa		2.74	□□□□□ -1.97
BER1	YLR412W	ENT1	Q12518	454 aa		2.74	□□□□□ -1.97
BER1	YLR412W	PAH1	P32567	862 aa		2.73	□□□□□ -1.97
BER1	YLR412W	TCD2	P36101	447 aa	Known RBP	2.73	□□□□□ -1.97
BER1	YLR412W	VID27	P40157	782 aa		2.73	□□□□□ -1.97
BER1	YLR412W	GWT1	P47026	490 aa		2.73	□□□□□ -1.97
BER1	YLR412W	HEF3	P53978	1044 aa	Known RBP	2.73	□□□□□ -1.97
BER1	YLR412W	RBS1	Q05672	457 aa	Known RBP	2.73	□□□□□ -1.97
BER1	YLR412W	YDR056C	Q12025	205 aa		2.73	□□□□□ -1.97
BER1	YLR412W	CFT2	Q12102	859 aa	Predicted RBP	2.73	□□□□□ -1.97
BER1	YLR412W	RLM1	Q12224	676 aa		2.73	□□□□□ -1.97
BER1	YLR412W	MES1	P00958	751 aa	Known RBP	2.72	□□□□□ -1.97
BER1	YLR412W	CPR1	P14832	162 aa	Known RBP	2.72	□□□□□ -1.97
BER1	YLR412W	GLK1	P17709	500 aa	Known RBP	2.72	□□□□□ -1.97
BER1	YLR412W	AAC3	P18238	307 aa		2.72	□□□□□ -1.97
BER1	YLR412W	RNA14	P25298	677 aa	Known RBP	2.72	□□□□□ -1.97
BER1	YLR412W	PAP1	P29468	568 aa	Known RBP	2.72	□□□□□ -1.97
BER1	YLR412W	ELP2	P42935	788 aa		2.72	□□□□□ -1.97
BER1	YLR412W	YGL242C	P53066	181 aa		2.72	□□□□□ -1.97
BER1	YLR412W	RKM5	Q12367	367 aa		2.72	□□□□□ -1.97
BER1	YLR412W	YJR112W-A	Q3E743	109 aa		2.72	□□□□□ -1.97
BER1	YLR412W	YER078W-A	Q3E7A2	54 aa		2.72	□□□□□ -1.97
BER1	YLR412W	SEM1	O94742	89 aa		2.71	□□□□□ -1.98
BER1	YLR412W	GAL80	P04387	435 aa		2.71	□□□□□ -1.98
BER1	YLR412W	COR1	P07256	457 aa		2.71	□□□□□ -1.98
BER1	YLR412W	PRP2	P20095	876 aa	Predicted RBP	2.71	□□□□□ -1.98
BER1	YLR412W	PEP3	P27801	918 aa		2.71	□□□□□ -1.98
BER1	YLR412W	YME1	P32795	747 aa		2.71	□□□□□ -1.98
BER1	YLR412W	REG2	P38232	338 aa		2.71	□□□□□ -1.98
BER1	YLR412W	MBB1	P39534	108 aa		2.71	□□□□□ -1.98
BER1	YLR412W	NOP16	P40007	231 aa	Known RBP	2.71	□□□□□ -1.98
BER1	YLR412W	MKT1	P40850	830 aa	Known RBP	2.71	□□□□□ -1.98
BER1	YLR412W	MRX6	P48564	524 aa		2.71	□□□□□ -1.98
BER1	YLR412W	SHE10	P53075	577 aa		2.71	□□□□□ -1.98
BER1	YLR412W	VPS38	Q05919	439 aa		2.71	□□□□□ -1.98
BER1	YLR412W	CTI6	Q08923	506 aa		2.71	□□□□□ -1.98

Retrieved 100 of 5,963 RNA–protein pairs in 15.4 ms