RNA–Protein interactions for RNA: YLL011W

SOF1, Transcript of Protein required for biogenesis of 40S (small) ribosomal subunit, yeast

Gene SOF1, Length 1,470 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
SOF1	YLL011W	GSH1	P32477	678 aa		4.37	□□□□□ -1.71
SOF1	YLL011W	SOF1	P33750	489 aa	Known RBP	4.37	□□□□□ -1.71
SOF1	YLL011W	MRPL4	P36517	319 aa		4.37	□□□□□ -1.71
SOF1	YLL011W	FAD1	P38913	306 aa		4.37	□□□□□ -1.71
SOF1	YLL011W	MLH1	P38920	769 aa		4.37	□□□□□ -1.71
SOF1	YLL011W	ECM10	P39987	644 aa		4.37	□□□□□ -1.71
SOF1	YLL011W	YJL107C	P42947	387 aa		4.37	□□□□□ -1.71
SOF1	YLL011W	FAR3	P46671	204 aa		4.37	□□□□□ -1.71
SOF1	YLL011W	NMA2	P53204	395 aa		4.37	□□□□□ -1.71
SOF1	YLL011W	YMR187C	Q03236	431 aa		4.37	□□□□□ -1.71
SOF1	YLL011W	TRS23	Q03784	219 aa		4.37	□□□□□ -1.71
SOF1	YLL011W	RPN9	Q04062	393 aa	Known RBP	4.37	□□□□□ -1.71
SOF1	YLL011W	MRPL1	Q04599	285 aa		4.37	□□□□□ -1.71
SOF1	YLL011W	AEP3	Q12089	606 aa		4.37	□□□□□ -1.71
SOF1	YLL011W	ATG9	Q12142	997 aa		4.37	□□□□□ -1.71
SOF1	YLL011W	GAL7	P08431	366 aa		4.37	□□□□□ -1.71
SOF1	YLL011W	HOM2	P13663	365 aa	Known RBP	4.37	□□□□□ -1.71
SOF1	YLL011W	SRV2	P17555	526 aa	Known RBP	4.37	□□□□□ -1.71
SOF1	YLL011W	YBL055C	P34220	418 aa	Predicted RBP	4.37	□□□□□ -1.71
SOF1	YLL011W	PXL1	P36166	706 aa		4.37	□□□□□ -1.71
SOF1	YLL011W	MSR1	P38714	643 aa		4.37	□□□□□ -1.71
SOF1	YLL011W	ELO1	P39540	310 aa		4.37	□□□□□ -1.71
SOF1	YLL011W	UIP3	P39547	235 aa		4.37	□□□□□ -1.71
SOF1	YLL011W	ELP2	P42935	788 aa		4.37	□□□□□ -1.71
SOF1	YLL011W	YFR020W	P43600	232 aa		4.37	□□□□□ -1.71
SOF1	YLL011W	URB2	P47108	1174 aa		4.37	□□□□□ -1.71
SOF1	YLL011W	ECM27	P47144	725 aa		4.37	□□□□□ -1.71
SOF1	YLL011W	RPN14	P53196	417 aa		4.37	□□□□□ -1.71
SOF1	YLL011W	YGR151C	P53287	111 aa		4.37	□□□□□ -1.71
SOF1	YLL011W	YMR130W	Q04223	302 aa		4.37	□□□□□ -1.71
SOF1	YLL011W	TAP42	Q04372	366 aa		4.37	□□□□□ -1.71
SOF1	YLL011W	UFO1	Q04511	668 aa		4.37	□□□□□ -1.71
SOF1	YLL011W	YOL159C	Q08300	171 aa		4.37	□□□□□ -1.71
SOF1	YLL011W	RKI1	Q12189	258 aa		4.37	□□□□□ -1.71
SOF1	YLL011W	PDR5	P33302	1511 aa	Known RBP	4.36	□□□□□ -1.71
SOF1	YLL011W	SIR3	P06701	978 aa		4.36	□□□□□ -1.71
SOF1	YLL011W	ABF1	P14164	731 aa		4.36	□□□□□ -1.71
SOF1	YLL011W	GDA1	P32621	518 aa		4.36	□□□□□ -1.71
SOF1	YLL011W	LHS1	P36016	881 aa		4.36	□□□□□ -1.71
SOF1	YLL011W	SNU114	P36048	1008 aa	Known RBP	4.36	□□□□□ -1.71
SOF1	YLL011W	PIM1	P36775	1133 aa		4.36	□□□□□ -1.71
SOF1	YLL011W	YPT10	P38146	199 aa		4.36	□□□□□ -1.71
SOF1	YLL011W	PTR3	P43606	678 aa		4.36	□□□□□ -1.71
SOF1	YLL011W	COS5	P47187	383 aa		4.36	□□□□□ -1.71
SOF1	YLL011W	MCM6	P53091	1017 aa	Known RBP	4.36	□□□□□ -1.71
SOF1	YLL011W	RRP46	P53256	223 aa	Predicted RBP	4.36	□□□□□ -1.71
SOF1	YLL011W	YGR127W	P53275	312 aa		4.36	□□□□□ -1.71
SOF1	YLL011W	RPT4	P53549	437 aa	Known RBP	4.36	□□□□□ -1.71
SOF1	YLL011W	IST1	P53843	298 aa	Predicted RBP	4.36	□□□□□ -1.71
SOF1	YLL011W	NSG2	P53898	299 aa		4.36	□□□□□ -1.71
SOF1	YLL011W	YPL034W	Q03083	165 aa		4.36	□□□□□ -1.71
SOF1	YLL011W	YDR132C	Q03900	495 aa		4.36	□□□□□ -1.71
SOF1	YLL011W	YDR179W-A	Q03983	463 aa		4.36	□□□□□ -1.71
SOF1	YLL011W	COQ9	Q05779	260 aa		4.36	□□□□□ -1.71
SOF1	YLL011W	COS7	Q07788	383 aa		4.36	□□□□□ -1.71
SOF1	YLL011W	RTT109	Q07794	436 aa		4.36	□□□□□ -1.71
SOF1	YLL011W	BCK1	Q01389	1478 aa		4.36	□□□□□ -1.71
SOF1	YLL011W	RPL31B	P0C2H9	113 aa	Known RBP	4.35	□□□□□ -1.71
SOF1	YLL011W	UBA1	P22515	1024 aa	Known RBP	4.35	□□□□□ -1.71
SOF1	YLL011W	FAA1	P30624	700 aa	Known RBP	4.35	□□□□□ -1.71
SOF1	YLL011W	NUP133	P36161	1157 aa		4.35	□□□□□ -1.71
SOF1	YLL011W	ZTA1	P38230	334 aa	Known RBP	4.35	□□□□□ -1.71
SOF1	YLL011W	ICS2	P38284	255 aa		4.35	□□□□□ -1.71
SOF1	YLL011W	IMD2	P38697	523 aa	Known RBP	4.35	□□□□□ -1.71
SOF1	YLL011W	YHL017W	P38745	532 aa		4.35	□□□□□ -1.71
SOF1	YLL011W	YJL163C	P46996	555 aa		4.35	□□□□□ -1.71
SOF1	YLL011W	SPT20	P50875	604 aa		4.35	□□□□□ -1.71
SOF1	YLL011W	YMR160W	Q03823	816 aa		4.35	□□□□□ -1.71
SOF1	YLL011W	TEN1	Q07921	160 aa		4.35	□□□□□ -1.71
SOF1	YLL011W	ENB1	Q08299	606 aa		4.35	□□□□□ -1.71
SOF1	YLL011W	APC5	Q08683	685 aa		4.35	□□□□□ -1.71
SOF1	YLL011W	APL5	Q08951	932 aa	Known RBP	4.35	□□□□□ -1.71
SOF1	YLL011W	TGS1	Q12052	315 aa		4.35	□□□□□ -1.71
SOF1	YLL011W	LCB4	Q12246	624 aa		4.35	□□□□□ -1.71
SOF1	YLL011W	TRM13	Q12383	476 aa		4.35	□□□□□ -1.71
SOF1	YLL011W	NBL1	Q3E7Y6	73 aa		4.35	□□□□□ -1.71
SOF1	YLL011W	Q0010	Q9ZZX9	128 aa		4.35	□□□□□ -1.71
SOF1	YLL011W	CFT1	Q06632	1357 aa	Known RBP	4.34	□□□□□ -1.71
SOF1	YLL011W	TRP3	P00937	484 aa		4.34	□□□□□ -1.71
SOF1	YLL011W	AAC1	P04710	309 aa		4.34	□□□□□ -1.71
SOF1	YLL011W	ARG81	P05085	880 aa		4.34	□□□□□ -1.71
SOF1	YLL011W	CHO2	P05374	869 aa	Known RBP	4.34	□□□□□ -1.71
SOF1	YLL011W	PDE2	P06776	526 aa		4.34	□□□□□ -1.71
SOF1	YLL011W	STE3	P06783	470 aa		4.34	□□□□□ -1.71
SOF1	YLL011W	TRP4	P07285	380 aa	Predicted RBP	4.34	□□□□□ -1.71
SOF1	YLL011W	ELO2	P25358	347 aa		4.34	□□□□□ -1.71
SOF1	YLL011W	YUH1	P35127	236 aa		4.34	□□□□□ -1.71
SOF1	YLL011W	EBP2	P36049	427 aa	Known RBP	4.34	□□□□□ -1.71
SOF1	YLL011W	MIC60	P36112	540 aa		4.34	□□□□□ -1.71
SOF1	YLL011W	ADE17	P38009	592 aa	Known RBP	4.34	□□□□□ -1.71
SOF1	YLL011W	APL3	P38065	1025 aa		4.34	□□□□□ -1.71
SOF1	YLL011W	KSP1	P38691	1029 aa	Known RBP	4.34	□□□□□ -1.71
SOF1	YLL011W	FMP52	P40008	231 aa		4.34	□□□□□ -1.71
SOF1	YLL011W	ASG1	P40467	964 aa		4.34	□□□□□ -1.71
SOF1	YLL011W	NUP84	P52891	726 aa		4.34	□□□□□ -1.71
SOF1	YLL011W	RMD9	P53140	646 aa	Known RBP	4.34	□□□□□ -1.71
SOF1	YLL011W	MRPL22	P53881	309 aa		4.34	□□□□□ -1.71
SOF1	YLL011W	MSC3	Q05812	728 aa		4.34	□□□□□ -1.71
SOF1	YLL011W	DCS1	Q06151	350 aa		4.34	□□□□□ -1.71
SOF1	YLL011W	YFH1	Q07540	174 aa		4.34	□□□□□ -1.71

Retrieved 100 of 5,963 RNA–protein pairs in 116.1 ms