RNA–Protein interactions for RNA: YKL010C

UFD4, Transcript of Ubiquitin-protein ligase (E3), yeastyeast

Gene UFD4, Length 4,452 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
UFD4YKL010C TRM5P38793 499 aa2.12□□□□□ -2.07
UFD4YKL010C MNN9P39107 395 aaKnown RBP2.12□□□□□ -2.07
UFD4YKL010C GDH3P39708 457 aa2.12□□□□□ -2.07
UFD4YKL010C YER034WP40022 185 aaKnown RBP2.12□□□□□ -2.07
UFD4YKL010C EMP65P40085 556 aa2.12□□□□□ -2.07
UFD4YKL010C CDC1P40986 491 aa2.12□□□□□ -2.07
UFD4YKL010C MET12P46151 657 aa2.12□□□□□ -2.07
UFD4YKL010C TAF1P46677 1066 aa2.12□□□□□ -2.07
UFD4YKL010C GUF1P46943 645 aa2.12□□□□□ -2.07
UFD4YKL010C ACF4P47129 309 aa2.12□□□□□ -2.07
UFD4YKL010C VPS25P47142 202 aa2.12□□□□□ -2.07
UFD4YKL010C MRK1P50873 501 aa2.12□□□□□ -2.07
UFD4YKL010C ACS2P52910 683 aaKnown RBP2.12□□□□□ -2.07
UFD4YKL010C YNL010WP53981 241 aaKnown RBP2.12□□□□□ -2.07
UFD4YKL010C SEC10Q06245 871 aa2.12□□□□□ -2.07
UFD4YKL010C RRT8Q08219 342 aa2.12□□□□□ -2.07
UFD4YKL010C YOR059CQ08448 450 aaKnown RBP2.12□□□□□ -2.07
UFD4YKL010C FUN30P31380 1131 aa2.11□□□□□ -2.07
UFD4YKL010C SSH4P32343 579 aa2.11□□□□□ -2.07
UFD4YKL010C GYP6P32806 458 aa2.11□□□□□ -2.07
UFD4YKL010C CLG1P35190 452 aa2.11□□□□□ -2.07
UFD4YKL010C CTF13P35203 478 aa2.11□□□□□ -2.07
UFD4YKL010C KES1P35844 434 aaKnown RBP2.11□□□□□ -2.07
UFD4YKL010C MRPL37P36532 105 aa2.11□□□□□ -2.07
UFD4YKL010C RIM11P38615 370 aa2.11□□□□□ -2.07
UFD4YKL010C CBR1P38626 284 aaKnown RBP2.11□□□□□ -2.07
UFD4YKL010C GGC1P38988 300 aa2.11□□□□□ -2.07
UFD4YKL010C FCY21P40039 528 aa2.11□□□□□ -2.07
UFD4YKL010C HPM1P40481 377 aa2.11□□□□□ -2.07
UFD4YKL010C YJR154WP47181 346 aa2.11□□□□□ -2.07
UFD4YKL010C MKC7P53379 596 aa2.11□□□□□ -2.07
UFD4YKL010C ORC3P54790 616 aa2.11□□□□□ -2.07
UFD4YKL010C ARP4P80428 489 aa2.11□□□□□ -2.07
UFD4YKL010C TLG1Q03322 224 aa2.11□□□□□ -2.07
UFD4YKL010C YDR476CQ03362 224 aa2.11□□□□□ -2.07
UFD4YKL010C RCR2Q03446 210 aaKnown RBP2.11□□□□□ -2.07
UFD4YKL010C YET2Q04210 160 aa2.11□□□□□ -2.07
UFD4YKL010C MRN1Q08925 612 aaKnown RBP RIP-Chip data2.11□□□□□ -2.07not detected
UFD4YKL010C YPL066WQ12194 479 aa2.11□□□□□ -2.07
UFD4YKL010C Q0182Q9ZZW1 134 aa2.11□□□□□ -2.07
UFD4YKL010C QCR7P00128 127 aa2.11□□□□□ -2.07
UFD4YKL010C SUC2P00724 532 aa2.11□□□□□ -2.07
UFD4YKL010C NFT1P0CE68 1218 aa2.11□□□□□ -2.07
UFD4YKL010C HMG1P12683 1054 aa2.11□□□□□ -2.07
UFD4YKL010C NMT1P14743 455 aa2.11□□□□□ -2.07
UFD4YKL010C MRPL8P22353 238 aa2.11□□□□□ -2.07
UFD4YKL010C YSR3P23501 404 aa2.11□□□□□ -2.07
UFD4YKL010C VPS3P23643 1011 aa2.11□□□□□ -2.07
UFD4YKL010C CTR86P25355 563 aa2.11□□□□□ -2.07
UFD4YKL010C YCL068CP25593 260 aa2.11□□□□□ -2.07
UFD4YKL010C HEM3P28789 327 aa2.11□□□□□ -2.07
UFD4YKL010C MF(ALPHA)2P32435 120 aa2.11□□□□□ -2.07
UFD4YKL010C IMP3P32899 183 aaPredicted RBP2.11□□□□□ -2.07
UFD4YKL010C YPT52P36018 234 aaKnown RBP2.11□□□□□ -2.07
UFD4YKL010C ECM4P36156 370 aa2.11□□□□□ -2.07
UFD4YKL010C RFS1P38234 210 aaKnown RBP2.11□□□□□ -2.07
UFD4YKL010C DBP8P38719 431 aa2.11□□□□□ -2.07
UFD4YKL010C YJL206CP39529 758 aa2.11□□□□□ -2.07
UFD4YKL010C RIC1P40395 1056 aa2.11□□□□□ -2.07
UFD4YKL010C IRR1P40541 1150 aa2.11□□□□□ -2.07
UFD4YKL010C NBP35P52920 328 aa2.11□□□□□ -2.07
UFD4YKL010C ROM1P53046 1155 aa2.11□□□□□ -2.07
UFD4YKL010C BUD9P53226 547 aa2.11□□□□□ -2.07
UFD4YKL010C YGR067CP53243 804 aa2.11□□□□□ -2.07
UFD4YKL010C DAM1P53267 343 aa2.11□□□□□ -2.07
UFD4YKL010C RBG2P53295 368 aaKnown RBP2.11□□□□□ -2.07
UFD4YKL010C NAN1Q02931 896 aaKnown RBP2.11□□□□□ -2.07
UFD4YKL010C YMR099CQ03161 297 aaKnown RBP2.11□□□□□ -2.07
UFD4YKL010C FLC1Q08967 793 aa2.11□□□□□ -2.07
UFD4YKL010C SVS1Q12254 260 aa2.11□□□□□ -2.07
UFD4YKL010C PHO5P00635 467 aa2.11□□□□□ -2.07
UFD4YKL010C STE3P06783 470 aa2.11□□□□□ -2.07
UFD4YKL010C TFS1P14306 219 aa2.11□□□□□ -2.07
UFD4YKL010C SEC63P14906 663 aa2.11□□□□□ -2.07
UFD4YKL010C PRP2P20095 876 aaPredicted RBP2.11□□□□□ -2.07
UFD4YKL010C PGS1P25578 521 aa2.11□□□□□ -2.07
UFD4YKL010C KAP122P32767 1081 aa2.11□□□□□ -2.07
UFD4YKL010C LIP5P32875 414 aa2.11□□□□□ -2.07
UFD4YKL010C STB6P36085 766 aa2.11□□□□□ -2.07
UFD4YKL010C FAD1P38913 306 aa2.11□□□□□ -2.07
UFD4YKL010C IPT1P38954 527 aa2.11□□□□□ -2.07
UFD4YKL010C RCY1P39531 840 aa2.11□□□□□ -2.07
UFD4YKL010C ALD5P40047 520 aaKnown RBP2.11□□□□□ -2.07
UFD4YKL010C UBP7P40453 1071 aa2.11□□□□□ -2.07
UFD4YKL010C IME4P41833 600 aa2.11□□□□□ -2.07
UFD4YKL010C REX2P54964 269 aaKnown RBP2.11□□□□□ -2.07
UFD4YKL010C LSM3P57743 89 aaKnown RBP2.11□□□□□ -2.07
UFD4YKL010C MRPS16Q02608 121 aa2.11□□□□□ -2.07
UFD4YKL010C YPL107WQ02873 248 aa2.11□□□□□ -2.07
UFD4YKL010C RKM2Q03942 479 aa2.11□□□□□ -2.07
UFD4YKL010C YSH1Q06224 779 aaPredicted RBP2.11□□□□□ -2.07
UFD4YKL010C FMP45Q07651 309 aa2.11□□□□□ -2.07
UFD4YKL010C LDB18Q07887 179 aa2.11□□□□□ -2.07
UFD4YKL010C RTP1Q12751 981 aa2.11□□□□□ -2.07
UFD4YKL010C MTF1P14908 341 aaKnown RBP2.11□□□□□ -2.07
UFD4YKL010C POT1P27796 417 aaKnown RBP RIP-Chip data2.11□□□□□ -2.07not detected
UFD4YKL010C ZIP1P31111 875 aa2.11□□□□□ -2.07
UFD4YKL010C YKR078WP36158 585 aaKnown RBP2.11□□□□□ -2.07
UFD4YKL010C SLM4P38247 162 aa2.11□□□□□ -2.07
UFD4YKL010C TPA1P40032 644 aaKnown RBP2.11□□□□□ -2.07
Retrieved 100 of 5,963 RNA–protein pairs in 16.6 ms