RNA–Protein interactions for RNA: YIL144W

NDC80, Transcript of Component of the kinetochore-associated Ndc80 complex, yeast

Gene NDC80, Length 2,076 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
NDC80	YIL144W	RPT5	P33297	434 aa	Known RBP	3.31	□□□□□ -1.88
NDC80	YIL144W	SRB2	P34162	210 aa		3.31	□□□□□ -1.88
NDC80	YIL144W	TIF3	P34167	436 aa	Known RBP	3.31	□□□□□ -1.88
NDC80	YIL144W	YKT6	P36015	200 aa	Known RBP	3.31	□□□□□ -1.88
NDC80	YIL144W	UBP11	P36026	717 aa		3.31	□□□□□ -1.88
NDC80	YIL144W	PEX32	P38292	413 aa		3.31	□□□□□ -1.88
NDC80	YIL144W	ELO1	P39540	310 aa		3.31	□□□□□ -1.88
NDC80	YIL144W	YJL107C	P42947	387 aa		3.31	□□□□□ -1.88
NDC80	YIL144W	RPS10B	P46784	105 aa	Known RBP	3.31	□□□□□ -1.88
NDC80	YIL144W	BPL1	P48445	690 aa	Predicted RBP	3.31	□□□□□ -1.88
NDC80	YIL144W	ARP5	P53946	755 aa		3.31	□□□□□ -1.88
NDC80	YIL144W	ASI1	P54074	624 aa		3.31	□□□□□ -1.88
NDC80	YIL144W	ABZ2	Q03266	374 aa		3.31	□□□□□ -1.88
NDC80	YIL144W	SLK19	Q08581	821 aa	Known RBP	3.31	□□□□□ -1.88
NDC80	YIL144W	RPS10A	Q08745	105 aa	Predicted RBP	3.31	□□□□□ -1.88
NDC80	YIL144W	FRE3	Q08905	711 aa		3.31	□□□□□ -1.88
NDC80	YIL144W	CTF3	Q12748	733 aa		3.31	□□□□□ -1.88
NDC80	YIL144W	ARO3	P14843	370 aa	Known RBP	3.3	□□□□□ -1.88
NDC80	YIL144W	RPB4	P20433	221 aa	Predicted RBP	3.3	□□□□□ -1.88
NDC80	YIL144W	PEX2	P32800	271 aa		3.3	□□□□□ -1.88
NDC80	YIL144W	OCT1	P35999	772 aa		3.3	□□□□□ -1.88
NDC80	YIL144W	VID24	P38263	362 aa		3.3	□□□□□ -1.88
NDC80	YIL144W	APD1	P38281	316 aa		3.3	□□□□□ -1.88
NDC80	YIL144W	DIA4	P38705	446 aa	Predicted RBP	3.3	□□□□□ -1.88
NDC80	YIL144W	LSC1	P53598	329 aa	Known RBP	3.3	□□□□□ -1.88
NDC80	YIL144W	ATP23	P53722	227 aa		3.3	□□□□□ -1.88
NDC80	YIL144W	RPA49	Q01080	415 aa	Predicted RBP	3.3	□□□□□ -1.88
NDC80	YIL144W	SOV1	Q04748	898 aa		3.3	□□□□□ -1.88
NDC80	YIL144W	MSC3	Q05812	728 aa		3.3	□□□□□ -1.88
NDC80	YIL144W	VPS54	Q12071	889 aa		3.3	□□□□□ -1.88
NDC80	YIL144W	TY3A-G	Q12173	290 aa		3.3	□□□□□ -1.88
NDC80	YIL144W	ADF1	Q2V2Q1	113 aa		3.3	□□□□□ -1.88
NDC80	YIL144W	TY3A-I	Q99219	290 aa		3.3	□□□□□ -1.88
NDC80	YIL144W	HXK2	P04807	486 aa	Known RBP	3.29	□□□□□ -1.88
NDC80	YIL144W	ERG11	P10614	530 aa		3.29	□□□□□ -1.88
NDC80	YIL144W	PUT4	P15380	627 aa		3.29	□□□□□ -1.88
NDC80	YIL144W	EST1	P17214	699 aa	Predicted RBP	3.29	□□□□□ -1.88
NDC80	YIL144W	SPS22	P25380	463 aa		3.29	□□□□□ -1.88
NDC80	YIL144W	CRM1	P30822	1084 aa	Known RBP	3.29	□□□□□ -1.88
NDC80	YIL144W	HMX1	P32339	317 aa		3.29	□□□□□ -1.88
NDC80	YIL144W	SKI2	P35207	1287 aa	Known RBP RIP-Chip data	3.29	□□□□□ -1.88	not detected
NDC80	YIL144W	ARN1	P38731	627 aa		3.29	□□□□□ -1.88
NDC80	YIL144W	UIP3	P39547	235 aa		3.29	□□□□□ -1.88
NDC80	YIL144W	ALD5	P40047	520 aa	Known RBP	3.29	□□□□□ -1.88
NDC80	YIL144W	CHS6	P40955	746 aa		3.29	□□□□□ -1.88
NDC80	YIL144W	IRC7	P43623	340 aa		3.29	□□□□□ -1.88
NDC80	YIL144W	NMD5	P46970	1048 aa		3.29	□□□□□ -1.88
NDC80	YIL144W	STR3	P53101	465 aa	Known RBP	3.29	□□□□□ -1.88
NDC80	YIL144W	CUE3	P53137	624 aa	Known RBP	3.29	□□□□□ -1.88
NDC80	YIL144W	IST1	P53843	298 aa	Predicted RBP	3.29	□□□□□ -1.88
NDC80	YIL144W	RSC9	Q03124	581 aa		3.29	□□□□□ -1.88
NDC80	YIL144W	LEU9	Q12166	604 aa	Known RBP	3.29	□□□□□ -1.88
NDC80	YIL144W	YRM1	Q12340	786 aa		3.29	□□□□□ -1.88
NDC80	YIL144W	GAL7	P08431	366 aa		3.29	□□□□□ -1.88
NDC80	YIL144W	SNT1	P25357	1226 aa		3.29	□□□□□ -1.88
NDC80	YIL144W	PAP1	P29468	568 aa	Known RBP	3.29	□□□□□ -1.88
NDC80	YIL144W	RME1	P32338	300 aa	Known RBP	3.29	□□□□□ -1.88
NDC80	YIL144W	REG2	P38232	338 aa		3.29	□□□□□ -1.88
NDC80	YIL144W	MMS4	P38257	691 aa		3.29	□□□□□ -1.88
NDC80	YIL144W	ANS1	P38832	159 aa		3.29	□□□□□ -1.88
NDC80	YIL144W	YIL089W	P40500	205 aa		3.29	□□□□□ -1.88
NDC80	YIL144W	DOT5	P40553	215 aa		3.29	□□□□□ -1.88
NDC80	YIL144W	HXT9	P40885	567 aa		3.29	□□□□□ -1.88
NDC80	YIL144W	MAF1	P41910	395 aa		3.29	□□□□□ -1.88
NDC80	YIL144W	CAK1	P43568	368 aa	Predicted RBP	3.29	□□□□□ -1.88
NDC80	YIL144W	ALK1	P43633	760 aa	Known RBP	3.29	□□□□□ -1.88
NDC80	YIL144W	ORC5	P50874	479 aa		3.29	□□□□□ -1.88
NDC80	YIL144W	MLC1	P53141	149 aa		3.29	□□□□□ -1.88
NDC80	YIL144W	EFM6	P53970	246 aa		3.29	□□□□□ -1.88
NDC80	YIL144W	MSC1	Q03104	513 aa		3.29	□□□□□ -1.88
NDC80	YIL144W	PFA5	Q03289	374 aa		3.29	□□□□□ -1.88
NDC80	YIL144W	PFK27	Q12471	397 aa	Predicted RBP	3.29	□□□□□ -1.88
NDC80	YIL144W	AVL9	Q12500	764 aa		3.29	□□□□□ -1.88
NDC80	YIL144W	MRP2	P10663	115 aa	Predicted RBP	3.28	□□□□□ -1.88
NDC80	YIL144W	MRP13	P12686	339 aa		3.28	□□□□□ -1.88
NDC80	YIL144W	CLB2	P24869	491 aa		3.28	□□□□□ -1.88
NDC80	YIL144W	BUD5	P25300	642 aa	Predicted RBP	3.28	□□□□□ -1.88
NDC80	YIL144W	PUP3	P25451	205 aa	Known RBP	3.28	□□□□□ -1.88
NDC80	YIL144W	ILV6	P25605	309 aa	Known RBP	3.28	□□□□□ -1.88
NDC80	YIL144W	YIH1	P25637	258 aa		3.28	□□□□□ -1.88
NDC80	YIL144W	DPH5	P32469	300 aa	Predicted RBP	3.28	□□□□□ -1.88
NDC80	YIL144W	DOA4	P32571	926 aa		3.28	□□□□□ -1.88
NDC80	YIL144W	MRE11	P32829	692 aa		3.28	□□□□□ -1.88
NDC80	YIL144W	LTV1	P34078	463 aa		3.28	□□□□□ -1.88
NDC80	YIL144W	SEF1	P34228	1148 aa		3.28	□□□□□ -1.88
NDC80	YIL144W	RFC3	P38629	340 aa		3.28	□□□□□ -1.88
NDC80	YIL144W	AIM10	P39965	576 aa	Known RBP	3.28	□□□□□ -1.88
NDC80	YIL144W	INA22	P40576	216 aa		3.28	□□□□□ -1.88
NDC80	YIL144W	YGR111W	P53265	400 aa		3.28	□□□□□ -1.88
NDC80	YIL144W	YNL144C	P53907	740 aa		3.28	□□□□□ -1.88
NDC80	YIL144W	INP2	Q03824	705 aa		3.28	□□□□□ -1.88
NDC80	YIL144W	ADE13	Q05911	482 aa	Known RBP	3.28	□□□□□ -1.88
NDC80	YIL144W	PDR8	Q06149	701 aa		3.28	□□□□□ -1.88
NDC80	YIL144W	MDM36	Q06820	579 aa		3.28	□□□□□ -1.88
NDC80	YIL144W	MCH4	Q08268	501 aa		3.28	□□□□□ -1.88
NDC80	YIL144W	UBX3	Q12229	455 aa		3.28	□□□□□ -1.88
NDC80	YIL144W	YPT1	P01123	206 aa	Known RBP	3.28	□□□□□ -1.89
NDC80	YIL144W	DFR1	P07807	211 aa	Known RBP RIP-Chip data	3.28	□□□□□ -1.89	not detected
NDC80	YIL144W	NUP1	P20676	1076 aa		3.28	□□□□□ -1.89
NDC80	YIL144W	VMA16	P23968	213 aa		3.28	□□□□□ -1.89

Retrieved 100 of 5,963 RNA–protein pairs in 187.9 ms