RNA–Protein interactions for RNA: YIL056W

VHR1, Transcript of Transcriptional activator, yeast

Gene VHR1, Length 1,923 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
VHR1	YIL056W	ARP1	P38696	384 aa		3	□□□□□ -1.93
VHR1	YIL056W	ERO1	Q03103	563 aa		3	□□□□□ -1.93
VHR1	YIL056W	VPS38	Q05919	439 aa		3	□□□□□ -1.93
VHR1	YIL056W	RRP9	Q06506	573 aa	Known RBP	3	□□□□□ -1.93
VHR1	YIL056W	NMD4	Q12129	218 aa		3	□□□□□ -1.93
VHR1	YIL056W	YJR112W-A	Q3E743	109 aa		3	□□□□□ -1.93
VHR1	YIL056W	YPT6	Q99260	215 aa		3	□□□□□ -1.93
VHR1	YIL056W	SPT7	P35177	1332 aa		3	□□□□□ -1.93
VHR1	YIL056W	GCN4	P03069	281 aa		2.99	□□□□□ -1.93
VHR1	YIL056W	PTR2	P32901	601 aa		2.99	□□□□□ -1.93
VHR1	YIL056W	ECM15	P35195	104 aa		2.99	□□□□□ -1.93
VHR1	YIL056W	CAJ1	P39101	391 aa		2.99	□□□□□ -1.93
VHR1	YIL056W	IMD4	P50094	524 aa	Known RBP	2.99	□□□□□ -1.93
VHR1	YIL056W	YDR239C	Q03780	787 aa		2.99	□□□□□ -1.93
VHR1	YIL056W	RBA50	Q04418	439 aa		2.99	□□□□□ -1.93
VHR1	YIL056W	HSP42	Q12329	375 aa		2.99	□□□□□ -1.93
VHR1	YIL056W	GAL80	P04387	435 aa		2.99	□□□□□ -1.93
VHR1	YIL056W	CDC23	P16522	626 aa		2.99	□□□□□ -1.93
VHR1	YIL056W	VMA8	P32610	256 aa	Known RBP	2.99	□□□□□ -1.93
VHR1	YIL056W	RXT2	P38255	430 aa		2.99	□□□□□ -1.93
VHR1	YIL056W	CCT4	P39078	528 aa	Known RBP	2.99	□□□□□ -1.93
VHR1	YIL056W	YTA12	P40341	825 aa		2.99	□□□□□ -1.93
VHR1	YIL056W	MRX6	P48564	524 aa		2.99	□□□□□ -1.93
VHR1	YIL056W	BUD32	P53323	261 aa		2.99	□□□□□ -1.93
VHR1	YIL056W	VTI1	Q04338	217 aa		2.99	□□□□□ -1.93
VHR1	YIL056W	THP1	Q08231	455 aa		2.99	□□□□□ -1.93
VHR1	YIL056W	AVL9	Q12500	764 aa		2.99	□□□□□ -1.93
VHR1	YIL056W	HSH49	Q99181	213 aa	Predicted RBP	2.99	□□□□□ -1.93
VHR1	YIL056W	APE1	P14904	514 aa		2.98	□□□□□ -1.93
VHR1	YIL056W	MTF1	P14908	341 aa	Known RBP	2.98	□□□□□ -1.93
VHR1	YIL056W	SEC1	P30619	724 aa	Known RBP	2.98	□□□□□ -1.93
VHR1	YIL056W	SHP1	P34223	423 aa		2.98	□□□□□ -1.93
VHR1	YIL056W	SPC34	P36131	295 aa		2.98	□□□□□ -1.93
VHR1	YIL056W	MSR1	P38714	643 aa		2.98	□□□□□ -1.93
VHR1	YIL056W	ALK1	P43633	760 aa	Known RBP	2.98	□□□□□ -1.93
VHR1	YIL056W	ALT2	P52892	507 aa		2.98	□□□□□ -1.93
VHR1	YIL056W	RHO4	Q00246	291 aa		2.98	□□□□□ -1.93
VHR1	YIL056W	TOF2	Q02208	771 aa		2.98	□□□□□ -1.93
VHR1	YIL056W	RTT109	Q07794	436 aa		2.98	□□□□□ -1.93
VHR1	YIL056W	YML133C	Q03099	1374 aa		2.98	□□□□□ -1.93
VHR1	YIL056W	YLL067C	Q07888	1374 aa		2.98	□□□□□ -1.93
VHR1	YIL056W	YLL066C	Q99208	1374 aa		2.98	□□□□□ -1.93
VHR1	YIL056W	TIF3	P34167	436 aa	Known RBP	2.97	□□□□□ -1.93
VHR1	YIL056W	TCD2	P36101	447 aa	Known RBP	2.97	□□□□□ -1.93
VHR1	YIL056W	GUF1	P46943	645 aa		2.97	□□□□□ -1.93
VHR1	YIL056W	APT1	P49435	187 aa	Known RBP	2.97	□□□□□ -1.93
VHR1	YIL056W	BTN2	P53286	410 aa		2.97	□□□□□ -1.93
VHR1	YIL056W	YKU80	Q04437	629 aa		2.97	□□□□□ -1.93
VHR1	YIL056W	IVY1	Q04934	453 aa		2.97	□□□□□ -1.93
VHR1	YIL056W	INO80	P53115	1489 aa		2.97	□□□□□ -1.93
VHR1	YIL056W	NAT1	P12945	854 aa	Known RBP	2.97	□□□□□ -1.93
VHR1	YIL056W	CDC60	P26637	1090 aa	Known RBP	2.97	□□□□□ -1.93
VHR1	YIL056W	NDC1	P32500	655 aa		2.97	□□□□□ -1.93
VHR1	YIL056W	PXA2	P34230	853 aa		2.97	□□□□□ -1.93
VHR1	YIL056W	BNA4	P38169	460 aa		2.97	□□□□□ -1.93
VHR1	YIL056W	OSH3	P38713	996 aa	Known RBP	2.97	□□□□□ -1.93
VHR1	YIL056W	YER130C	P39959	443 aa		2.97	□□□□□ -1.93
VHR1	YIL056W	CSM2	P40465	213 aa		2.97	□□□□□ -1.93
VHR1	YIL056W	UPF3	P48412	387 aa	Known RBP	2.97	□□□□□ -1.93
VHR1	YIL056W	ATP22	P50273	684 aa	Predicted RBP	2.97	□□□□□ -1.93
VHR1	YIL056W	CAF130	P53280	1122 aa	Predicted RBP	2.97	□□□□□ -1.93
VHR1	YIL056W	YDR286C	Q05530	114 aa		2.97	□□□□□ -1.93
VHR1	YIL056W	THI20	Q08224	551 aa		2.97	□□□□□ -1.93
VHR1	YIL056W	PPT2	Q12036	173 aa		2.97	□□□□□ -1.93
VHR1	YIL056W	RLM1	Q12224	676 aa		2.97	□□□□□ -1.93
VHR1	YIL056W	EXO70	P19658	623 aa		2.96	□□□□□ -1.94
VHR1	YIL056W	OCA4	P25366	362 aa		2.96	□□□□□ -1.94
VHR1	YIL056W	RPS2	P25443	254 aa	Known RBP	2.96	□□□□□ -1.94
VHR1	YIL056W	SRO77	P38163	1010 aa		2.96	□□□□□ -1.94
VHR1	YIL056W	CST26	P38226	397 aa		2.96	□□□□□ -1.94
VHR1	YIL056W	MDM31	P38880	579 aa		2.96	□□□□□ -1.94
VHR1	YIL056W	NPR2	P39923	615 aa		2.96	□□□□□ -1.94
VHR1	YIL056W	SGN1	P40561	250 aa	Known RBP RIP-Chip data	2.96	□□□□□ -1.94	not detected
VHR1	YIL056W	ARF3	P40994	183 aa	RIP-Chip data	2.96	□□□□□ -1.94	RIP-Chip
VHR1	YIL056W	MFB1	Q04922	465 aa		2.96	□□□□□ -1.94
VHR1	YIL056W	YDR341C	Q05506	607 aa	Known RBP	2.96	□□□□□ -1.94
VHR1	YIL056W	SCM3	Q12334	223 aa		2.96	□□□□□ -1.94
VHR1	YIL056W	QCR6	P00127	147 aa		2.95	□□□□□ -1.94
VHR1	YIL056W	PHO2	P07269	559 aa		2.95	□□□□□ -1.94
VHR1	YIL056W	DFR1	P07807	211 aa	Known RBP RIP-Chip data	2.95	□□□□□ -1.94	not detected
VHR1	YIL056W	MRP7	P12687	371 aa		2.95	□□□□□ -1.94
VHR1	YIL056W	YHR218W	P38899	603 aa		2.95	□□□□□ -1.94
VHR1	YIL056W	VPS52	P39904	641 aa		2.95	□□□□□ -1.94
VHR1	YIL056W	POP1	P41812	875 aa		2.95	□□□□□ -1.94
VHR1	YIL056W	GPD2	P41911	440 aa	Known RBP	2.95	□□□□□ -1.94
VHR1	YIL056W	ELP2	P42935	788 aa		2.95	□□□□□ -1.94
VHR1	YIL056W	ZPR1	P53303	486 aa	Known RBP	2.95	□□□□□ -1.94
VHR1	YIL056W	MSC1	Q03104	513 aa		2.95	□□□□□ -1.94
VHR1	YIL056W	PGC1	Q08959	321 aa		2.95	□□□□□ -1.94
VHR1	YIL056W	YPL272C	Q08984	517 aa		2.95	□□□□□ -1.94
VHR1	YIL056W	LSP1	Q12230	341 aa	Known RBP	2.95	□□□□□ -1.94
VHR1	YIL056W	SET6	Q12529	373 aa		2.95	□□□□□ -1.94
VHR1	YIL056W	OLE1	P21147	510 aa	Known RBP	2.95	□□□□□ -1.94
VHR1	YIL056W	SIP2	P34164	415 aa	Known RBP	2.95	□□□□□ -1.94
VHR1	YIL056W	YBR225W	P38321	900 aa		2.95	□□□□□ -1.94
VHR1	YIL056W	YHR210C	P38893	341 aa		2.95	□□□□□ -1.94
VHR1	YIL056W	SEC27	P41811	889 aa	Known RBP	2.95	□□□□□ -1.94
VHR1	YIL056W	VPS75	P53853	264 aa		2.95	□□□□□ -1.94
VHR1	YIL056W	COQ9	Q05779	260 aa		2.95	□□□□□ -1.94
VHR1	YIL056W	MRPL51	Q06090	140 aa	Predicted RBP	2.95	□□□□□ -1.94

Retrieved 100 of 5,963 RNA–protein pairs in 41.5 ms