RNA–Protein interactions for RNA: YGR072W

UPF3, Transcript of Component of the nonsense-mediated mRNA decay (NMD) pathway, yeastyeast

Gene UPF3, Length 1,164 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
UPF3YGR072W SDS24P38314 527 aa3.29□□□□□ -1.88
UPF3YGR072W UBA4P38820 440 aa3.29□□□□□ -1.88
UPF3YGR072W VPS41P38959 992 aa3.29□□□□□ -1.88
UPF3YGR072W YIL169CP40442 995 aa3.29□□□□□ -1.88
UPF3YGR072W FMS1P50264 508 aa3.29□□□□□ -1.88
UPF3YGR072W SGF73P53165 657 aa3.29□□□□□ -1.88
UPF3YGR072W EAF7P53911 425 aaKnown RBP3.29□□□□□ -1.88
UPF3YGR072W YVH1Q02256 364 aaKnown RBP3.29□□□□□ -1.88
UPF3YGR072W KAP120Q02932 1032 aa3.29□□□□□ -1.88
UPF3YGR072W YMR160WQ03823 816 aa3.29□□□□□ -1.88
UPF3YGR072W ERB1Q04660 807 aaKnown RBP3.29□□□□□ -1.88
UPF3YGR072W RTT109Q07794 436 aa3.29□□□□□ -1.88
UPF3YGR072W RDR1Q08904 546 aa3.29□□□□□ -1.88
UPF3YGR072W SPS4P09937 338 aa3.28□□□□□ -1.88
UPF3YGR072W SRV2P17555 526 aaKnown RBP3.28□□□□□ -1.88
UPF3YGR072W PRP2P20095 876 aaPredicted RBP3.28□□□□□ -1.88
UPF3YGR072W CLB1P24868 471 aa3.28□□□□□ -1.88
UPF3YGR072W SNC1P31109 117 aa3.28□□□□□ -1.88
UPF3YGR072W LAG1P38703 411 aa3.28□□□□□ -1.88
UPF3YGR072W JEM1P40358 645 aa3.28□□□□□ -1.88
UPF3YGR072W ZIM17P42844 174 aa3.28□□□□□ -1.88
UPF3YGR072W BUD27P43573 796 aaKnown RBP RIP-Chip data3.28□□□□□ -1.88not detected
UPF3YGR072W SNG1P46950 547 aa3.28□□□□□ -1.88
UPF3YGR072W URB2P47108 1174 aa3.28□□□□□ -1.88
UPF3YGR072W YNL234WP53857 426 aa3.28□□□□□ -1.88
UPF3YGR072W SHR3Q02774 210 aa3.28□□□□□ -1.88
UPF3YGR072W CAC2Q04199 468 aa3.28□□□□□ -1.88
UPF3YGR072W ROY1Q04847 553 aa3.28□□□□□ -1.88
UPF3YGR072W DON1Q05610 365 aa3.28□□□□□ -1.88
UPF3YGR072W ECI1Q05871 280 aa3.28□□□□□ -1.88
UPF3YGR072W YDL057WQ07379 328 aa3.28□□□□□ -1.88
UPF3YGR072W YDL218WQ07629 317 aa3.28□□□□□ -1.88
UPF3YGR072W RPS10AQ08745 105 aaPredicted RBP3.28□□□□□ -1.88
UPF3YGR072W AFI1Q99222 893 aa3.28□□□□□ -1.88
UPF3YGR072W RHO2P06781 192 aa3.27□□□□□ -1.89
UPF3YGR072W PEP5P12868 1029 aa3.27□□□□□ -1.89
UPF3YGR072W MDH1P17505 334 aaKnown RBP RIP-Chip data3.27□□□□□ -1.89not detected
UPF3YGR072W NIP100P33420 868 aa3.27□□□□□ -1.89
UPF3YGR072W YIL060WP40519 144 aa3.27□□□□□ -1.89
UPF3YGR072W RPS10BP46784 105 aaKnown RBP3.27□□□□□ -1.89
UPF3YGR072W YPT11P48559 417 aa3.27□□□□□ -1.89
UPF3YGR072W PYK2P52489 506 aaKnown RBP3.27□□□□□ -1.89
UPF3YGR072W SMM1P53720 384 aaKnown RBP3.27□□□□□ -1.89
UPF3YGR072W BNI5P53890 448 aaKnown RBP3.27□□□□□ -1.89
UPF3YGR072W RPA49Q01080 415 aaPredicted RBP3.27□□□□□ -1.89
UPF3YGR072W MSC1Q03104 513 aa3.27□□□□□ -1.89
UPF3YGR072W RPC11Q04307 110 aaPredicted RBP3.27□□□□□ -1.89
UPF3YGR072W AIM32Q04689 311 aa3.27□□□□□ -1.89
UPF3YGR072W YMR317WQ04893 1140 aa3.27□□□□□ -1.89
UPF3YGR072W RTT103Q05543 409 aa3.27□□□□□ -1.89
UPF3YGR072W RRP45Q05636 305 aaKnown RBP3.27□□□□□ -1.89
UPF3YGR072W ADE13Q05911 482 aaKnown RBP3.27□□□□□ -1.89
UPF3YGR072W SSK1Q07084 712 aa3.27□□□□□ -1.89
UPF3YGR072W THP1Q08231 455 aa3.27□□□□□ -1.89
UPF3YGR072W RAV1P47104 1357 aa3.26□□□□□ -1.89
UPF3YGR072W CBP1P07252 654 aa3.26□□□□□ -1.89
UPF3YGR072W CPR2P23285 205 aa3.26□□□□□ -1.89
UPF3YGR072W BUD14P27637 709 aa3.26□□□□□ -1.89
UPF3YGR072W AFG1P32317 509 aa3.26□□□□□ -1.89
UPF3YGR072W HXT3P32466 567 aaKnown RBP3.26□□□□□ -1.89
UPF3YGR072W YME2P32843 850 aa3.26□□□□□ -1.89
UPF3YGR072W YOX1P34161 385 aa3.26□□□□□ -1.89
UPF3YGR072W TUL1P36096 758 aa3.26□□□□□ -1.89
UPF3YGR072W YHR210CP38893 341 aa3.26□□□□□ -1.89
UPF3YGR072W MBB1P39534 108 aa3.26□□□□□ -1.89
UPF3YGR072W PHO90P39535 881 aa3.26□□□□□ -1.89
UPF3YGR072W CAK1P43568 368 aaPredicted RBP3.26□□□□□ -1.89
UPF3YGR072W ATG27P46989 271 aa3.26□□□□□ -1.89
UPF3YGR072W YGL138CP53122 345 aa3.26□□□□□ -1.89
UPF3YGR072W RMD9P53140 646 aaKnown RBP3.26□□□□□ -1.89
UPF3YGR072W SOL4P53315 255 aa3.26□□□□□ -1.89
UPF3YGR072W ARX1Q03862 593 aaKnown RBP3.26□□□□□ -1.89
UPF3YGR072W COQ9Q05779 260 aa3.26□□□□□ -1.89
UPF3YGR072W YLR345WQ06137 509 aa3.26□□□□□ -1.89
UPF3YGR072W HSP42Q12329 375 aa3.26□□□□□ -1.89
UPF3YGR072W GPH1P06738 902 aaKnown RBP3.25□□□□□ -1.89
UPF3YGR072W COR1P07256 457 aa3.25□□□□□ -1.89
UPF3YGR072W YFL068WP0CX99 160 aa3.25□□□□□ -1.89
UPF3YGR072W YLL066W-AP0CY00 160 aa3.25□□□□□ -1.89
UPF3YGR072W YLL067W-AP0CY01 160 aa3.25□□□□□ -1.89
UPF3YGR072W OPI1P21957 404 aa3.25□□□□□ -1.89
UPF3YGR072W PPH22P23595 377 aa3.25□□□□□ -1.89
UPF3YGR072W MNE1P24720 663 aa3.25□□□□□ -1.89
UPF3YGR072W SPB1P25582 841 aaPredicted RBP3.25□□□□□ -1.89
UPF3YGR072W URA7P28274 579 aaKnown RBP3.25□□□□□ -1.89
UPF3YGR072W RML2P32611 393 aa3.25□□□□□ -1.89
UPF3YGR072W REC114P32841 428 aa3.25□□□□□ -1.89
UPF3YGR072W MDL1P33310 695 aa3.25□□□□□ -1.89
UPF3YGR072W FMP46P36141 133 aaKnown RBP3.25□□□□□ -1.89
UPF3YGR072W CBP4P37267 147 aa3.25□□□□□ -1.89
UPF3YGR072W BNA4P38169 460 aa3.25□□□□□ -1.89
UPF3YGR072W GDI1P39958 451 aaKnown RBP3.25□□□□□ -1.89
UPF3YGR072W YJL055WP47044 245 aa3.25□□□□□ -1.89
UPF3YGR072W COS5P47187 383 aa3.25□□□□□ -1.89
UPF3YGR072W YGR149WP48236 432 aa3.25□□□□□ -1.89
UPF3YGR072W YGL082WP53155 381 aa3.25□□□□□ -1.89
UPF3YGR072W YNL181WP53878 407 aa3.25□□□□□ -1.89
UPF3YGR072W SKO1Q02100 647 aa3.25□□□□□ -1.89
UPF3YGR072W HOT1Q03213 719 aa3.25□□□□□ -1.89
UPF3YGR072W GYL1Q04322 720 aa3.25□□□□□ -1.89
Retrieved 100 of 5,963 RNA–protein pairs in 10.4 ms