RNA–Protein interactions for RNA: YGL006W

PMC1, Transcript of Vacuolar Ca2+ ATPase involved in depleting cytosol of Ca2+ ions, yeast

Gene PMC1, Length 3,522 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
PMC1	YGL006W	DDC1	Q08949	612 aa		4.16	□□□□□ -1.74
PMC1	YGL006W	ATP6	P00854	259 aa		4.15	□□□□□ -1.74
PMC1	YGL006W	FBP1	P09201	348 aa		4.15	□□□□□ -1.74
PMC1	YGL006W	FUS1	P11710	512 aa		4.15	□□□□□ -1.74
PMC1	YGL006W	HPR1	P17629	752 aa	Known RBP	4.15	□□□□□ -1.74
PMC1	YGL006W	GIT1	P25346	518 aa		4.15	□□□□□ -1.74
PMC1	YGL006W	RAD27	P26793	382 aa		4.15	□□□□□ -1.74
PMC1	YGL006W	SSO1	P32867	290 aa		4.15	□□□□□ -1.74
PMC1	YGL006W	SKT5	P34226	696 aa		4.15	□□□□□ -1.74
PMC1	YGL006W	MRPL36	P36531	177 aa		4.15	□□□□□ -1.74
PMC1	YGL006W	ECM8	P38246	354 aa		4.15	□□□□□ -1.74
PMC1	YGL006W	MNN9	P39107	395 aa	Known RBP	4.15	□□□□□ -1.74
PMC1	YGL006W	EXO1	P39875	702 aa		4.15	□□□□□ -1.74
PMC1	YGL006W	YKE4	P40544	346 aa		4.15	□□□□□ -1.74
PMC1	YGL006W	MEP2	P41948	499 aa		4.15	□□□□□ -1.74
PMC1	YGL006W	CCT8	P47079	568 aa	Known RBP	4.15	□□□□□ -1.74
PMC1	YGL006W	CGR1	P53188	120 aa		4.15	□□□□□ -1.74
PMC1	YGL006W	SLM2	P53955	656 aa		4.15	□□□□□ -1.74
PMC1	YGL006W	TRS31	Q03337	283 aa		4.15	□□□□□ -1.74
PMC1	YGL006W	RSC58	Q07979	502 aa		4.15	□□□□□ -1.74
PMC1	YGL006W	FEX1	Q08913	375 aa		4.15	□□□□□ -1.74
PMC1	YGL006W	YPL199C	Q08954	240 aa		4.15	□□□□□ -1.74
PMC1	YGL006W	ATP16	Q12165	160 aa		4.15	□□□□□ -1.74
PMC1	YGL006W	YOL159C-A	Q3E769	90 aa		4.15	□□□□□ -1.74
PMC1	YGL006W	KAR1	P11927	433 aa		4.15	□□□□□ -1.75
PMC1	YGL006W	TOP3	P13099	656 aa		4.15	□□□□□ -1.75
PMC1	YGL006W	PKC1	P24583	1151 aa		4.15	□□□□□ -1.75
PMC1	YGL006W	TOS1	P38288	455 aa		4.15	□□□□□ -1.75
PMC1	YGL006W	CCT6	P39079	546 aa		4.15	□□□□□ -1.75
PMC1	YGL006W	YEL020C	P39994	560 aa		4.15	□□□□□ -1.75
PMC1	YGL006W	YGR210C	P42942	411 aa		4.15	□□□□□ -1.75
PMC1	YGL006W	MPS2	P53159	387 aa		4.15	□□□□□ -1.75
PMC1	YGL006W	NRD1	P53617	575 aa	Known RBP RIP-Chip data	4.15	□□□□□ -1.75	not detected
PMC1	YGL006W	CPR8	P53728	308 aa		4.15	□□□□□ -1.75
PMC1	YGL006W	YML131W	Q03102	365 aa		4.15	□□□□□ -1.75
PMC1	YGL006W	ERO1	Q03103	563 aa		4.15	□□□□□ -1.75
PMC1	YGL006W	RLI1	Q03195	608 aa	Known RBP	4.15	□□□□□ -1.75
PMC1	YGL006W	MZM1	Q03429	123 aa	Predicted RBP	4.15	□□□□□ -1.75
PMC1	YGL006W	NHP10	Q03435	203 aa		4.15	□□□□□ -1.75
PMC1	YGL006W	YPR027C	Q12079	277 aa		4.15	□□□□□ -1.75
PMC1	YGL006W	PCD1	Q12524	340 aa		4.15	□□□□□ -1.75
PMC1	YGL006W	YGL194C-A	Q2V2P6	80 aa		4.15	□□□□□ -1.75
PMC1	YGL006W	INO1	P11986	533 aa		4.15	□□□□□ -1.75
PMC1	YGL006W	HSP30	P25619	332 aa		4.15	□□□□□ -1.75
PMC1	YGL006W	RIM1	P32445	135 aa	Known RBP	4.15	□□□□□ -1.75
PMC1	YGL006W	SLX5	P32828	619 aa	Known RBP	4.15	□□□□□ -1.75
PMC1	YGL006W	AHP1	P38013	176 aa	Known RBP	4.15	□□□□□ -1.75
PMC1	YGL006W	ROT2	P38138	954 aa		4.15	□□□□□ -1.75
PMC1	YGL006W	ARP1	P38696	384 aa		4.15	□□□□□ -1.75
PMC1	YGL006W	YAP1801	P38856	637 aa		4.15	□□□□□ -1.75
PMC1	YGL006W	DUN1	P39009	513 aa		4.15	□□□□□ -1.75
PMC1	YGL006W	ERP2	P39704	215 aa		4.15	□□□□□ -1.75
PMC1	YGL006W	YEL025C	P39991	1188 aa		4.15	□□□□□ -1.75
PMC1	YGL006W	GCD14	P46959	383 aa	Predicted RBP	4.15	□□□□□ -1.75
PMC1	YGL006W	MAL11	P53048	616 aa		4.15	□□□□□ -1.75
PMC1	YGL006W	SPR6	Q01684	191 aa		4.15	□□□□□ -1.75
PMC1	YGL006W	YLL007C	Q07799	665 aa		4.15	□□□□□ -1.75
PMC1	YGL006W	YOR022C	Q12204	715 aa		4.15	□□□□□ -1.75
PMC1	YGL006W	SUS1	Q6WNK7	96 aa		4.15	□□□□□ -1.75
PMC1	YGL006W	MYO1	P08964	1928 aa		4.14	□□□□□ -1.75
PMC1	YGL006W	YRF1-3	P0CX14	1859 aa		4.14	□□□□□ -1.75
PMC1	YGL006W	YRF1-7	P0CX15	1859 aa		4.14	□□□□□ -1.75
PMC1	YGL006W	YRF1-6	P53819	1859 aa		4.14	□□□□□ -1.75
PMC1	YGL006W	HIS1	P00498	297 aa	Known RBP	4.14	□□□□□ -1.75
PMC1	YGL006W	CBP2	P03874	630 aa	Predicted RBP	4.14	□□□□□ -1.75
PMC1	YGL006W	SIR3	P06701	978 aa		4.14	□□□□□ -1.75
PMC1	YGL006W	AMD2	P22580	549 aa		4.14	□□□□□ -1.75
PMC1	YGL006W	TRX2	P22803	104 aa	Known RBP	4.14	□□□□□ -1.75
PMC1	YGL006W	YCR099C	P25657	155 aa		4.14	□□□□□ -1.75
PMC1	YGL006W	IXR1	P33417	597 aa		4.14	□□□□□ -1.75
PMC1	YGL006W	DHR2	P36009	735 aa	Predicted RBP	4.14	□□□□□ -1.75
PMC1	YGL006W	MCR1	P36060	302 aa	Known RBP	4.14	□□□□□ -1.75
PMC1	YGL006W	NAT2	P37293	288 aa		4.14	□□□□□ -1.75
PMC1	YGL006W	KTR4	P38131	464 aa		4.14	□□□□□ -1.75
PMC1	YGL006W	IPT1	P38954	527 aa		4.14	□□□□□ -1.75
PMC1	YGL006W	DSS1	P39112	969 aa		4.14	□□□□□ -1.75
PMC1	YGL006W	QDR1	P40475	563 aa		4.14	□□□□□ -1.75
PMC1	YGL006W	CAK1	P43568	368 aa	Predicted RBP	4.14	□□□□□ -1.75
PMC1	YGL006W	YJL007C	P47080	104 aa		4.14	□□□□□ -1.75
PMC1	YGL006W	GTO1	P48239	356 aa		4.14	□□□□□ -1.75
PMC1	YGL006W	CAF120	P53836	1060 aa		4.14	□□□□□ -1.75
PMC1	YGL006W	SPG3	Q04398	127 aa	Predicted RBP	4.14	□□□□□ -1.75
PMC1	YGL006W	DXO1	Q06349	442 aa		4.14	□□□□□ -1.75
PMC1	YGL006W	YOL036W	Q08206	761 aa		4.14	□□□□□ -1.75
PMC1	YGL006W	RPN5	Q12250	445 aa	Known RBP	4.14	□□□□□ -1.75
PMC1	YGL006W	MET2	P08465	486 aa		4.14	□□□□□ -1.75
PMC1	YGL006W	DBP3	P20447	523 aa	Known RBP	4.14	□□□□□ -1.75
PMC1	YGL006W	KGD1	P20967	1014 aa	Known RBP	4.14	□□□□□ -1.75
PMC1	YGL006W	DIT1	P21623	536 aa		4.14	□□□□□ -1.75
PMC1	YGL006W	RHB1	P25378	209 aa		4.14	□□□□□ -1.75
PMC1	YGL006W	KAP122	P32767	1081 aa		4.14	□□□□□ -1.75
PMC1	YGL006W	MAK5	P38112	773 aa	Predicted RBP	4.14	□□□□□ -1.75
PMC1	YGL006W	MRP21	P38175	177 aa		4.14	□□□□□ -1.75
PMC1	YGL006W	YEN1	P40028	759 aa		4.14	□□□□□ -1.75
PMC1	YGL006W	CAF16	P43569	289 aa		4.14	□□□□□ -1.75
PMC1	YGL006W	IRC18	P47056	224 aa		4.14	□□□□□ -1.75
PMC1	YGL006W	YPR003C	P53394	754 aa		4.14	□□□□□ -1.75
PMC1	YGL006W	GAL83	Q04739	417 aa		4.14	□□□□□ -1.75
PMC1	YGL006W	DCS1	Q06151	350 aa		4.14	□□□□□ -1.75
PMC1	YGL006W	ARP7	Q12406	477 aa		4.14	□□□□□ -1.75

Retrieved 100 of 5,963 RNA–protein pairs in 14.2 ms