RNA–Protein interactions for RNA: ENST00000608957.5

LINC00539-204, long intergenic non-protein coding RNA 539, humanhuman

TSL 5 BASIC

Gene LINC00539, Length 869 nt, Biotype lincRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00539-204ENST00000608957 RNF180Q86T96 592 aa13.43□□□□□ -0.26
LINC00539-204ENST00000608957 HSCBQ8IWL3 235 aa13.43□□□□□ -0.26
LINC00539-204ENST00000608957 FBXO16Q8IX29 292 aaPredicted RBP13.43□□□□□ -0.26
LINC00539-204ENST00000608957 RASEFQ8IZ41 740 aa13.43□□□□□ -0.26
LINC00539-204ENST00000608957 NCOA7Q8NI08 942 aa13.43□□□□□ -0.26
LINC00539-204ENST00000608957 IGDCC4Q8TDY8 1250 aa13.43□□□□□ -0.26
LINC00539-204ENST00000608957 SNX21Q969T3 373 aa13.43□□□□□ -0.26
LINC00539-204ENST00000608957 JMJD4Q9H9V9 463 aa13.43□□□□□ -0.26
LINC00539-204ENST00000608957 GPHNQ9NQX3 736 aaPredicted RBP13.43□□□□□ -0.26
LINC00539-204ENST00000608957 GNEQ9Y223 722 aaKnown RBP13.43□□□□□ -0.26
LINC00539-204ENST00000608957 ATP11BQ9Y2G3 1177 aa13.43□□□□□ -0.26
LINC00539-204ENST00000608957 PALM3A6NDB9 673 aaPredicted RBP13.42□□□□□ -0.26
LINC00539-204ENST00000608957 SOX1O00570 391 aaPredicted RBP13.42□□□□□ -0.26
LINC00539-204ENST00000608957 IFIT3O14879 490 aaKnown RBP13.42□□□□□ -0.26
LINC00539-204ENST00000608957 PPP1R11O60927 126 aaPredicted RBP13.42□□□□□ -0.26
LINC00539-204ENST00000608957 CALML3P27482 149 aa13.42□□□□□ -0.26
LINC00539-204ENST00000608957 CST5P28325 142 aaPredicted RBP13.42□□□□□ -0.26
LINC00539-204ENST00000608957 BMP8BP34820 402 aa13.42□□□□□ -0.26
LINC00539-204ENST00000608957 GJA9P57773 515 aa13.42□□□□□ -0.26
LINC00539-204ENST00000608957 RPS6P62753 249 aaKnown RBP13.42□□□□□ -0.26
LINC00539-204ENST00000608957 NKX3-2P78367 333 aa13.42□□□□□ -0.26
LINC00539-204ENST00000608957 TRDNQ13061 729 aa13.42□□□□□ -0.26
LINC00539-204ENST00000608957 GRM4Q14833 912 aa13.42□□□□□ -0.26
LINC00539-204ENST00000608957 KCNA10Q16322 511 aa13.42□□□□□ -0.26
LINC00539-204ENST00000608957 SH3RF1Q7Z6J0 888 aa13.42□□□□□ -0.26
LINC00539-204ENST00000608957 MTMR8Q96EF0 704 aa13.42□□□□□ -0.26
LINC00539-204ENST00000608957 VAT1LQ9HCJ6 419 aa13.42□□□□□ -0.26
LINC00539-204ENST00000608957 COL20A1Q9P218 1284 aa13.42□□□□□ -0.26
LINC00539-204ENST00000608957 OPLAHO14841 1288 aa13.41□□□□□ -0.26
LINC00539-204ENST00000608957 ST18O60284 1047 aa13.41□□□□□ -0.26
LINC00539-204ENST00000608957 SMPD1P17405 629 aa13.41□□□□□ -0.26
LINC00539-204ENST00000608957 ACLYP53396 1101 aa13.41□□□□□ -0.26
LINC00539-204ENST00000608957 MDM2Q00987 491 aaPredicted RBP13.41□□□□□ -0.26
LINC00539-204ENST00000608957 BEX3Q00994 111 aa13.41□□□□□ -0.26
LINC00539-204ENST00000608957 TNFAIP2Q03169 654 aa13.41□□□□□ -0.26
LINC00539-204ENST00000608957 TROAPQ12815 778 aa13.41□□□□□ -0.26
LINC00539-204ENST00000608957 KRT32Q14532 448 aa13.41□□□□□ -0.26
LINC00539-204ENST00000608957 C1orf53Q5VUE5 145 aa13.41□□□□□ -0.26
LINC00539-204ENST00000608957 RNF207Q6ZRF8 634 aa13.41□□□□□ -0.26
LINC00539-204ENST00000608957 RALYLQ86SE5 291 aaKnown RBP13.41□□□□□ -0.26
LINC00539-204ENST00000608957 IL27Q8NEV9 243 aa13.41□□□□□ -0.26
LINC00539-204ENST00000608957 JAKMIP1Q96N16 626 aaKnown RBP13.41□□□□□ -0.26
LINC00539-204ENST00000608957 TSEN34Q9BSV6 310 aaKnown RBP13.41□□□□□ -0.26
LINC00539-204ENST00000608957 LY9Q9HBG7 655 aa13.41□□□□□ -0.26
LINC00539-204ENST00000608957 PDLIM7Q9NR12 457 aa13.41□□□□□ -0.26
LINC00539-204ENST00000608957 DOCK5Q9H7D0 1870 aa13.4□□□□□ -0.26
LINC00539-204ENST00000608957 SCN10AQ9Y5Y9 1956 aa13.4□□□□□ -0.26
LINC00539-204ENST00000608957 TRIM43BA6NCK2 446 aa13.4□□□□□ -0.26
LINC00539-204ENST00000608957 KLRF2D3W0D1 207 aa13.4□□□□□ -0.26
LINC00539-204ENST00000608957 CYTH3O43739 400 aa13.4□□□□□ -0.26
LINC00539-204ENST00000608957 C6orf222P0C671 652 aaPredicted RBP13.4□□□□□ -0.26
LINC00539-204ENST00000608957 EDNRBP24530 442 aa13.4□□□□□ -0.26
LINC00539-204ENST00000608957 TLE2Q04725 743 aa13.4□□□□□ -0.26
LINC00539-204ENST00000608957 WTAPQ15007 396 aa13.4□□□□□ -0.26
LINC00539-204ENST00000608957 TSGA10IPQ3SY00 556 aa13.4□□□□□ -0.26
LINC00539-204ENST00000608957 TMEM67Q5HYA8 995 aa13.4□□□□□ -0.26
LINC00539-204ENST00000608957 TRIM43Q96BQ3 446 aaPredicted RBP13.4□□□□□ -0.26
LINC00539-204ENST00000608957 TM6SF1Q9BZW5 370 aa13.4□□□□□ -0.26
LINC00539-204ENST00000608957 VTA1Q9NP79 307 aa13.4□□□□□ -0.26
LINC00539-204ENST00000608957 DAXXQ9UER7 740 aaPredicted RBP13.4□□□□□ -0.26
LINC00539-204ENST00000608957 PNMA2Q9UL42 364 aa13.4□□□□□ -0.26
LINC00539-204ENST00000608957 SZT2Q5T011 3432 aa13.4□□□□□ -0.26
LINC00539-204ENST00000608957 ABCB11O95342 1321 aa13.39□□□□□ -0.27
LINC00539-204ENST00000608957 A0A1W2PPC1 479 aa13.39□□□□□ -0.27
LINC00539-204ENST00000608957 RBM47A0AV96 593 aaKnown RBP13.39□□□□□ -0.27
LINC00539-204ENST00000608957 MOXD2PA6NHM9 499 aa13.39□□□□□ -0.27
LINC00539-204ENST00000608957 CD2BP2O95400 341 aaKnown RBP13.39□□□□□ -0.27
LINC00539-204ENST00000608957 ASGR1P07306 291 aa13.39□□□□□ -0.27
LINC00539-204ENST00000608957 ITGB8P26012 769 aa13.39□□□□□ -0.27
LINC00539-204ENST00000608957 PSMA5P28066 241 aa13.39□□□□□ -0.27
LINC00539-204ENST00000608957 NEK4P51957 841 aa13.39□□□□□ -0.27
LINC00539-204ENST00000608957 ADCK5Q3MIX3 580 aa13.39□□□□□ -0.27
LINC00539-204ENST00000608957 TLK2Q86UE8 772 aa13.39□□□□□ -0.27
LINC00539-204ENST00000608957 FBXO11Q86XK2 927 aa13.39□□□□□ -0.27
LINC00539-204ENST00000608957 RGS22Q8NE09 1264 aa13.39□□□□□ -0.27
LINC00539-204ENST00000608957 SYTL5Q8TDW5 730 aaPredicted RBP13.39□□□□□ -0.27
LINC00539-204ENST00000608957 TAAR1Q96RJ0 339 aa13.39□□□□□ -0.27
LINC00539-204ENST00000608957 MYL10Q9BUA6 226 aa13.39□□□□□ -0.27
LINC00539-204ENST00000608957 UPF3BQ9BZI7 483 aaKnown RBP13.39□□□□□ -0.27
LINC00539-204ENST00000608957 RIOX1Q9H6W3 641 aa13.39□□□□□ -0.27
LINC00539-204ENST00000608957 LOC102724159A0A0B4J2E5 919 aa13.38□□□□□ -0.27
LINC00539-204ENST00000608957 SH2B2O14492 632 aaPredicted RBP13.38□□□□□ -0.27
LINC00539-204ENST00000608957 PRC1O43663 620 aa13.38□□□□□ -0.27
LINC00539-204ENST00000608957 DHX16O60231 1041 aaKnown RBP13.38□□□□□ -0.27
LINC00539-204ENST00000608957 CASTP20810 708 aaKnown RBP13.38□□□□□ -0.27
LINC00539-204ENST00000608957 PWP2Q15269 919 aaKnown RBP13.38□□□□□ -0.27
LINC00539-204ENST00000608957 IQSEC1Q6DN90 963 aa13.38□□□□□ -0.27
LINC00539-204ENST00000608957 DNERQ8NFT8 737 aa13.38□□□□□ -0.27
LINC00539-204ENST00000608957 LRCH3Q96II8 777 aa13.38□□□□□ -0.27
LINC00539-204ENST00000608957 PIGSQ96S52 555 aa13.38□□□□□ -0.27
LINC00539-204ENST00000608957 ZSWIM6Q9HCJ5 1215 aa13.38□□□□□ -0.27
LINC00539-204ENST00000608957 STARD7Q9NQZ5 370 aa13.38□□□□□ -0.27
LINC00539-204ENST00000608957 ADD3Q9UEY8 706 aaKnown RBP13.38□□□□□ -0.27
LINC00539-204ENST00000608957 LAMA3Q16787 3333 aa13.38□□□□□ -0.27
LINC00539-204ENST00000608957 ERICH2A1L162 156 aa13.37□□□□□ -0.27
LINC00539-204ENST00000608957 K7ELQ4 463 aaPredicted RBP13.37□□□□□ -0.27
LINC00539-204ENST00000608957 ZBTB5O15062 677 aa13.37□□□□□ -0.27
LINC00539-204ENST00000608957 DYNC1LI2O43237 492 aaPredicted RBP13.37□□□□□ -0.27
LINC00539-204ENST00000608957 ARIH2O95376 493 aa13.37□□□□□ -0.27
LINC00539-204ENST00000608957 MCM2P49736 904 aa13.37□□□□□ -0.27
Retrieved 100 of 20,778 RNA–protein pairs in 20.9 ms