RNA–Protein interactions for RNA: ENST00000556422.5

TMEM260-210, Transcript of transmembrane protein 260, humanhuman

TSL 1 (best)

Gene TMEM260, Length 3,864 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TMEM260-210ENST00000556422 SLX4Q8IY92 1834 aa5.7□□□□□ -1.5
TMEM260-210ENST00000556422 GAKO14976 1311 aa5.7□□□□□ -1.5
TMEM260-210ENST00000556422 A0A087X0B3 334 aa5.7□□□□□ -1.5
TMEM260-210ENST00000556422 GPR75-ASB3A0A0A6YYF3 556 aa5.7□□□□□ -1.5
TMEM260-210ENST00000556422 USP17L3A6NCW0 530 aa5.7□□□□□ -1.5
TMEM260-210ENST00000556422 USP17L4A6NCW7 530 aa5.7□□□□□ -1.5
TMEM260-210ENST00000556422 CALM1P0DP23 149 aa5.7□□□□□ -1.5
TMEM260-210ENST00000556422 CALM2P0DP24 149 aa5.7□□□□□ -1.5
TMEM260-210ENST00000556422 CALM3P0DP25 149 aa5.7□□□□□ -1.5
TMEM260-210ENST00000556422 RASA1P20936 1047 aa5.7□□□□□ -1.5
TMEM260-210ENST00000556422 ATP2B4P23634 1241 aa5.7□□□□□ -1.5
TMEM260-210ENST00000556422 PDE4BQ07343 736 aa5.7□□□□□ -1.5
TMEM260-210ENST00000556422 NOLC1Q14978 699 aaKnown RBP eCLIP5.7□□□□□ -1.5
TMEM260-210ENST00000556422 USP17L1Q7RTZ2 530 aa5.7□□□□□ -1.5
TMEM260-210ENST00000556422 FAM114A1Q8IWE2 563 aa5.7□□□□□ -1.5
TMEM260-210ENST00000556422 STAG2Q8N3U4 1231 aa5.7□□□□□ -1.5
TMEM260-210ENST00000556422 FLCNQ8NFG4 579 aa5.7□□□□□ -1.5
TMEM260-210ENST00000556422 ANKS1AQ92625 1134 aa5.7□□□□□ -1.5
TMEM260-210ENST00000556422 RBM17Q96I25 401 aaKnown RBP5.7□□□□□ -1.5
TMEM260-210ENST00000556422 CRAMP1Q96RY5 1269 aa5.7□□□□□ -1.5
TMEM260-210ENST00000556422 FAM117AQ9C073 453 aa5.7□□□□□ -1.5
TMEM260-210ENST00000556422 JADE2Q9NQC1 790 aa5.7□□□□□ -1.5
TMEM260-210ENST00000556422 GGA1Q9UJY5 639 aa5.7□□□□□ -1.5
TMEM260-210ENST00000556422 KCNH3Q9ULD8 1083 aa5.7□□□□□ -1.5
TMEM260-210ENST00000556422 TMCC3Q9ULS5 477 aa5.7□□□□□ -1.5
TMEM260-210ENST00000556422 FLT1P17948 1338 aa5.69□□□□□ -1.5
TMEM260-210ENST00000556422 CYTH3O43739 400 aa5.69□□□□□ -1.5
TMEM260-210ENST00000556422 BBOX1O75936 387 aa5.69□□□□□ -1.5
TMEM260-210ENST00000556422 TPPPO94811 219 aa5.69□□□□□ -1.5
TMEM260-210ENST00000556422 BTDP43251 543 aa5.69□□□□□ -1.5
TMEM260-210ENST00000556422 GJA8P48165 433 aa5.69□□□□□ -1.5
TMEM260-210ENST00000556422 NLRP12P59046 1061 aa5.69□□□□□ -1.5
TMEM260-210ENST00000556422 TFAP4Q01664 338 aa5.69□□□□□ -1.5
TMEM260-210ENST00000556422 SAFBQ15424 915 aaKnown RBP eCLIP5.69□□□□□ -1.5
TMEM260-210ENST00000556422 TYW1BQ6NUM6 668 aa5.69□□□□□ -1.5
TMEM260-210ENST00000556422 SEPT14Q6ZU15 432 aa5.69□□□□□ -1.5
TMEM260-210ENST00000556422 MAPKAPK5Q8IW41 473 aa5.69□□□□□ -1.5
TMEM260-210ENST00000556422 CACTINQ8WUQ7 758 aaKnown RBP5.69□□□□□ -1.5
TMEM260-210ENST00000556422 AKT1S1Q96B36 256 aa5.69□□□□□ -1.5
TMEM260-210ENST00000556422 CENPOQ9BU64 300 aa5.69□□□□□ -1.5
TMEM260-210ENST00000556422 YIPF2Q9BWQ6 316 aa5.69□□□□□ -1.5
TMEM260-210ENST00000556422 ZNHIT6Q9NWK9 470 aaKnown RBP5.69□□□□□ -1.5
TMEM260-210ENST00000556422 SRPRBQ9Y5M8 271 aaKnown RBP5.69□□□□□ -1.5
TMEM260-210ENST00000556422 N6AMT1Q9Y5N5 214 aa5.69□□□□□ -1.5
TMEM260-210ENST00000556422 IVNS1ABPQ9Y6Y0 642 aa5.69□□□□□ -1.5
TMEM260-210ENST00000556422 BICDL2A1A5D9 508 aa5.69□□□□□ -1.5
TMEM260-210ENST00000556422 IQCJ-SCHIP1C9J366 451 aaPredicted RBP5.69□□□□□ -1.5
TMEM260-210ENST00000556422 GTF2F1P35269 517 aaKnown RBP eCLIP5.69□□□□□ -1.5
TMEM260-210ENST00000556422 ARID5BQ14865 1188 aa5.69□□□□□ -1.5
TMEM260-210ENST00000556422 PFKFB3Q16875 520 aaPredicted RBP5.69□□□□□ -1.5
TMEM260-210ENST00000556422 MFSD14BQ5SR56 506 aa5.69□□□□□ -1.5
TMEM260-210ENST00000556422 C10orf62Q5T681 223 aaPredicted RBP5.69□□□□□ -1.5
TMEM260-210ENST00000556422 FAAH2Q6GMR7 532 aa5.69□□□□□ -1.5
TMEM260-210ENST00000556422 ISM2Q6H9L7 571 aa5.69□□□□□ -1.5
TMEM260-210ENST00000556422 DGKHQ86XP1 1220 aa5.69□□□□□ -1.5
TMEM260-210ENST00000556422 COL23A1Q86Y22 540 aaPredicted RBP5.69□□□□□ -1.5
TMEM260-210ENST00000556422 ZNF579Q8NAF0 562 aaKnown RBP5.69□□□□□ -1.5
TMEM260-210ENST00000556422 PNMA1Q8ND90 353 aa5.69□□□□□ -1.5
TMEM260-210ENST00000556422 FAM163AQ96GL9 167 aaPredicted RBP5.69□□□□□ -1.5
TMEM260-210ENST00000556422 EXOC1Q9NV70 894 aa5.69□□□□□ -1.5
TMEM260-210ENST00000556422 MKS1Q9NXB0 559 aa5.69□□□□□ -1.5
TMEM260-210ENST00000556422 CLIP2Q9UDT6 1046 aa5.69□□□□□ -1.5
TMEM260-210ENST00000556422 MAD2L2Q9UI95 211 aa5.69□□□□□ -1.5
TMEM260-210ENST00000556422 FAM205AQ6ZU69 1335 aa5.69□□□□□ -1.5
TMEM260-210ENST00000556422 M0R2N6 131 aa5.69□□□□□ -1.5
TMEM260-210ENST00000556422 ACTN4O43707 911 aaKnown RBP5.69□□□□□ -1.5
TMEM260-210ENST00000556422 SRGNP10124 158 aa5.69□□□□□ -1.5
TMEM260-210ENST00000556422 KRT2P35908 639 aa5.69□□□□□ -1.5
TMEM260-210ENST00000556422 CCDC178Q5BJE1 867 aa5.69□□□□□ -1.5
TMEM260-210ENST00000556422 NT5DC1Q5TFE4 455 aa5.69□□□□□ -1.5
TMEM260-210ENST00000556422 CERS5Q8N5B7 392 aa5.69□□□□□ -1.5
TMEM260-210ENST00000556422 BHMTQ93088 406 aa5.69□□□□□ -1.5
TMEM260-210ENST00000556422 CSRNP2Q9H175 543 aa5.69□□□□□ -1.5
TMEM260-210ENST00000556422 TCP11L1Q9NUJ3 509 aa5.69□□□□□ -1.5
TMEM260-210ENST00000556422 PCDHA5Q9Y5H7 936 aa5.69□□□□□ -1.5
TMEM260-210ENST00000556422 SMC2O95347 1197 aa5.68□□□□□ -1.5
TMEM260-210ENST00000556422 BAG3O95817 575 aa5.68□□□□□ -1.5
TMEM260-210ENST00000556422 VDRP11473 427 aa5.68□□□□□ -1.5
TMEM260-210ENST00000556422 SCG2P13521 617 aa5.68□□□□□ -1.5
TMEM260-210ENST00000556422 TCF3P15923 654 aa5.68□□□□□ -1.5
TMEM260-210ENST00000556422 SARSP49591 514 aaKnown RBP5.68□□□□□ -1.5
TMEM260-210ENST00000556422 MNAT1P51948 309 aa5.68□□□□□ -1.5
TMEM260-210ENST00000556422 HNRNPH2P55795 449 aaKnown RBP5.68□□□□□ -1.5
TMEM260-210ENST00000556422 GSTO1P78417 241 aa5.68□□□□□ -1.5
TMEM260-210ENST00000556422 C4orf46Q504U0 113 aa5.68□□□□□ -1.5
TMEM260-210ENST00000556422 NYAP1Q6ZVC0 841 aa5.68□□□□□ -1.5
TMEM260-210ENST00000556422 C16orf86Q6ZW13 317 aa5.68□□□□□ -1.5
TMEM260-210ENST00000556422 DPH6Q7L8W6 267 aa5.68□□□□□ -1.5
TMEM260-210ENST00000556422 CTCFLQ8NI51 663 aaPredicted RBP5.68□□□□□ -1.5
TMEM260-210ENST00000556422 SPATA20Q8TB22 786 aa5.68□□□□□ -1.5
TMEM260-210ENST00000556422 RBM46Q8TBY0 533 aaKnown RBP5.68□□□□□ -1.5
TMEM260-210ENST00000556422 SAP30BPQ9UHR5 308 aaKnown RBP5.68□□□□□ -1.5
TMEM260-210ENST00000556422 BLOC1S6Q9UL45 172 aa5.68□□□□□ -1.5
TMEM260-210ENST00000556422 BECN2A8MW95 431 aa5.68□□□□□ -1.5
TMEM260-210ENST00000556422 PPEF1O14829 653 aaPredicted RBP5.68□□□□□ -1.5
TMEM260-210ENST00000556422 POLR2DO15514 142 aaKnown RBP5.68□□□□□ -1.5
TMEM260-210ENST00000556422 ATP1A3P13637 1013 aa5.68□□□□□ -1.5
TMEM260-210ENST00000556422 NOVP48745 357 aa5.68□□□□□ -1.5
TMEM260-210ENST00000556422 FKBP15Q5T1M5 1219 aa5.68□□□□□ -1.5
TMEM260-210ENST00000556422 SAMD3Q8N6K7 520 aa5.68□□□□□ -1.5
Retrieved 100 of 20,778 RNA–protein pairs in 12.6 ms