RNA–Protein interactions for RNA: ENST00000515847.1

LIMCH1-222, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 4

Gene LIMCH1, Length 490 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-222ENST00000515847 PNMA6FA0A0J9YX94 578 aa8.95□□□□□ -0.98
LIMCH1-222ENST00000515847 SLC15A5A6NIM6 579 aa8.95□□□□□ -0.98
LIMCH1-222ENST00000515847 TAL1P17542 331 aaPredicted RBP8.95□□□□□ -0.98
LIMCH1-222ENST00000515847 APOBRQ0VD83 1088 aa8.95□□□□□ -0.98
LIMCH1-222ENST00000515847 PWP2Q15269 919 aaKnown RBP8.95□□□□□ -0.98
LIMCH1-222ENST00000515847 MORN1Q5T089 497 aa8.95□□□□□ -0.98
LIMCH1-222ENST00000515847 MCTP2Q6DN12 878 aa8.95□□□□□ -0.98
LIMCH1-222ENST00000515847 CCDC174Q6PII3 467 aa8.95□□□□□ -0.98
LIMCH1-222ENST00000515847 DHX30Q7L2E3 1194 aaKnown RBP eCLIP8.95□□□□□ -0.98
LIMCH1-222ENST00000515847 HOMER1Q86YM7 354 aa8.95□□□□□ -0.98
LIMCH1-222ENST00000515847 ADGRF4Q8IZF3 695 aa8.95□□□□□ -0.98
LIMCH1-222ENST00000515847 CPXCR1Q8N123 301 aa8.95□□□□□ -0.98
LIMCH1-222ENST00000515847 RAET1EQ8TD07 263 aa8.95□□□□□ -0.98
LIMCH1-222ENST00000515847 CUL5Q93034 780 aa8.95□□□□□ -0.98
LIMCH1-222ENST00000515847 MMP19Q99542 508 aa8.95□□□□□ -0.98
LIMCH1-222ENST00000515847 APBA2Q99767 749 aa8.95□□□□□ -0.98
LIMCH1-222ENST00000515847 MYL10Q9BUA6 226 aa8.95□□□□□ -0.98
LIMCH1-222ENST00000515847 RNF26Q9BY78 433 aaPredicted RBP8.95□□□□□ -0.98
LIMCH1-222ENST00000515847 UBA5Q9GZZ9 404 aa8.95□□□□□ -0.98
LIMCH1-222ENST00000515847 RNF146Q9NTX7 359 aa8.95□□□□□ -0.98
LIMCH1-222ENST00000515847 MAP3K20Q9NYL2 800 aaKnown RBP8.95□□□□□ -0.98
LIMCH1-222ENST00000515847 GJD2Q9UKL4 321 aa8.95□□□□□ -0.98
LIMCH1-222ENST00000515847 LIMCH1Q9UPQ0 1083 aa8.95□□□□□ -0.98
LIMCH1-222ENST00000515847 BRCA2P51587 3418 aa8.95□□□□□ -0.98
LIMCH1-222ENST00000515847 ALAS1P13196 640 aa8.94□□□□□ -0.98
LIMCH1-222ENST00000515847 ELNP15502 786 aa8.94□□□□□ -0.98
LIMCH1-222ENST00000515847 CAPN2P17655 700 aa8.94□□□□□ -0.98
LIMCH1-222ENST00000515847 SLC4A3P48751 1232 aa8.94□□□□□ -0.98
LIMCH1-222ENST00000515847 AK2P54819 239 aa8.94□□□□□ -0.98
LIMCH1-222ENST00000515847 HMGN5P82970 282 aaKnown RBP8.94□□□□□ -0.98
LIMCH1-222ENST00000515847 IRF5Q13568 498 aa8.94□□□□□ -0.98
LIMCH1-222ENST00000515847 GRB14Q14449 540 aa8.94□□□□□ -0.98
LIMCH1-222ENST00000515847 SLC9C1Q4G0N8 1177 aa8.94□□□□□ -0.98
LIMCH1-222ENST00000515847 NBPF11Q86T75 865 aa8.94□□□□□ -0.98
LIMCH1-222ENST00000515847 RAB11FIP4Q86YS3 637 aa8.94□□□□□ -0.98
LIMCH1-222ENST00000515847 ANKRD35Q8N283 1001 aa8.94□□□□□ -0.98
LIMCH1-222ENST00000515847 STAG2Q8N3U4 1231 aa8.94□□□□□ -0.98
LIMCH1-222ENST00000515847 MSL3Q8N5Y2 521 aaKnown RBP8.94□□□□□ -0.98
LIMCH1-222ENST00000515847 SH3TC2Q8TF17 1288 aa8.94□□□□□ -0.98
LIMCH1-222ENST00000515847 USP6NLQ92738 828 aa8.94□□□□□ -0.98
LIMCH1-222ENST00000515847 DDX11Q96FC9 970 aa8.94□□□□□ -0.98
LIMCH1-222ENST00000515847 AGBL1Q96MI9 1066 aa8.94□□□□□ -0.98
LIMCH1-222ENST00000515847 RIOX1Q9H6W3 641 aa8.94□□□□□ -0.98
LIMCH1-222ENST00000515847 HOMER2Q9NSB8 354 aa8.94□□□□□ -0.98
LIMCH1-222ENST00000515847 ADD3Q9UEY8 706 aaKnown RBP8.94□□□□□ -0.98
LIMCH1-222ENST00000515847 RIPK3Q9Y572 518 aa8.94□□□□□ -0.98
LIMCH1-222ENST00000515847 ZNF536O15090 1300 aa8.94□□□□□ -0.98
LIMCH1-222ENST00000515847 STK36Q9NRP7 1315 aa8.94□□□□□ -0.98
LIMCH1-222ENST00000515847 SMCHD1A6NHR9 2005 aa8.93□□□□□ -0.98
LIMCH1-222ENST00000515847 ADCY3O60266 1144 aa8.93□□□□□ -0.98
LIMCH1-222ENST00000515847 DEXIO95424 95 aa8.93□□□□□ -0.98
LIMCH1-222ENST00000515847 XRCC5P13010 732 aaKnown RBP8.93□□□□□ -0.98
LIMCH1-222ENST00000515847 IFNAR1P17181 557 aa8.93□□□□□ -0.98
LIMCH1-222ENST00000515847 RXRAP19793 462 aa8.93□□□□□ -0.98
LIMCH1-222ENST00000515847 CYP2B6P20813 491 aa8.93□□□□□ -0.98
LIMCH1-222ENST00000515847 PTPREP23469 700 aa8.93□□□□□ -0.98
LIMCH1-222ENST00000515847 ADORA2AP29274 412 aa8.93□□□□□ -0.98
LIMCH1-222ENST00000515847 PDIA3P30101 505 aaKnown RBP8.93□□□□□ -0.98
LIMCH1-222ENST00000515847 GRK4P32298 578 aa8.93□□□□□ -0.98
LIMCH1-222ENST00000515847 UBXN2AP68543 259 aa8.93□□□□□ -0.98
LIMCH1-222ENST00000515847 SSRP1Q08945 709 aaKnown RBP8.93□□□□□ -0.98
LIMCH1-222ENST00000515847 MAP2K5Q13163 448 aa8.93□□□□□ -0.98
LIMCH1-222ENST00000515847 TOB2Q14106 344 aaPredicted RBP8.93□□□□□ -0.98
LIMCH1-222ENST00000515847 TRIM29Q14134 588 aa8.93□□□□□ -0.98
LIMCH1-222ENST00000515847 SLC35G1Q2M3R5 365 aa8.93□□□□□ -0.98
LIMCH1-222ENST00000515847 QRICH1Q2TAL8 776 aa8.93□□□□□ -0.98
LIMCH1-222ENST00000515847 DPP9Q86TI2 863 aa8.93□□□□□ -0.98
LIMCH1-222ENST00000515847 HSCBQ8IWL3 235 aa8.93□□□□□ -0.98
LIMCH1-222ENST00000515847 CCDC144CPQ8IYA2 1237 aa8.93□□□□□ -0.98
LIMCH1-222ENST00000515847 RGS22Q8NE09 1264 aa8.93□□□□□ -0.98
LIMCH1-222ENST00000515847 BICD2Q8TD16 824 aa8.93□□□□□ -0.98
LIMCH1-222ENST00000515847 ARMC5Q96C12 935 aa8.93□□□□□ -0.98
LIMCH1-222ENST00000515847 TRERF1Q96PN7 1200 aa8.93□□□□□ -0.98
LIMCH1-222ENST00000515847 BRMS1Q9HCU9 246 aa8.93□□□□□ -0.98
LIMCH1-222ENST00000515847 DIS3Q9Y2L1 958 aaKnown RBP8.93□□□□□ -0.98
LIMCH1-222ENST00000515847 ZSCAN21Q9Y5A6 473 aaPredicted RBP8.93□□□□□ -0.98
LIMCH1-222ENST00000515847 CNTNAP5Q8WYK1 1306 aa8.93□□□□□ -0.98
LIMCH1-222ENST00000515847 BAZ2BQ9UIF8 2168 aaKnown RBP8.92□□□□□ -0.98
LIMCH1-222ENST00000515847 MYH6P13533 1939 aa8.92□□□□□ -0.98
LIMCH1-222ENST00000515847 ZNFX1Q9P2E3 1918 aaKnown RBP8.92□□□□□ -0.98
LIMCH1-222ENST00000515847 PLXNA1Q9UIW2 1896 aa8.92□□□□□ -0.98
LIMCH1-222ENST00000515847 PFKFB2O60825 505 aa8.92□□□□□ -0.98
LIMCH1-222ENST00000515847 GNA11P29992 359 aa8.92□□□□□ -0.98
LIMCH1-222ENST00000515847 CCL14Q16627 93 aa8.92□□□□□ -0.98
LIMCH1-222ENST00000515847 USH1GQ495M9 461 aa8.92□□□□□ -0.98
LIMCH1-222ENST00000515847 MFSD14CQ5VZR4 134 aa8.92□□□□□ -0.98
LIMCH1-222ENST00000515847 GALNT17Q6IS24 598 aa8.92□□□□□ -0.98
LIMCH1-222ENST00000515847 GPR153Q6NV75 609 aa8.92□□□□□ -0.98
LIMCH1-222ENST00000515847 HEATR3Q7Z4Q2 680 aa8.92□□□□□ -0.98
LIMCH1-222ENST00000515847 PXYLP1Q8TE99 480 aa8.92□□□□□ -0.98
LIMCH1-222ENST00000515847 TRIB2Q92519 343 aa8.92□□□□□ -0.98
LIMCH1-222ENST00000515847 GTF3C6Q969F1 213 aa8.92□□□□□ -0.98
LIMCH1-222ENST00000515847 MTMR8Q96EF0 704 aa8.92□□□□□ -0.98
LIMCH1-222ENST00000515847 ZNF333Q96JL9 665 aa8.92□□□□□ -0.98
LIMCH1-222ENST00000515847 LLPHQ9BRT6 129 aaKnown RBP8.92□□□□□ -0.98
LIMCH1-222ENST00000515847 JMJD4Q9H9V9 463 aa8.92□□□□□ -0.98
LIMCH1-222ENST00000515847 VAT1LQ9HCJ6 419 aa8.92□□□□□ -0.98
LIMCH1-222ENST00000515847 NRBP1Q9UHY1 535 aa8.92□□□□□ -0.98
LIMCH1-222ENST00000515847 BRPF3Q9ULD4 1205 aa8.92□□□□□ -0.98
LIMCH1-222ENST00000515847 PCDHA1Q9Y5I3 950 aa8.92□□□□□ -0.98
Retrieved 100 of 20,778 RNA–protein pairs in 22.9 ms