RNA–Protein interactions for RNA: ENST00000493608.1

COL6A3-214, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 2

Gene COL6A3, Length 742 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-214ENST00000493608 PGK1P00558 417 aa12.52□□□□□ -0.41
COL6A3-214ENST00000493608 GOLGA8HP0CJ92 632 aa12.52□□□□□ -0.41
COL6A3-214ENST00000493608 PDHBP11177 359 aa12.52□□□□□ -0.41
COL6A3-214ENST00000493608 LRRC41Q15345 812 aa12.52□□□□□ -0.41
COL6A3-214ENST00000493608 SYDE2Q5VT97 1194 aa12.52□□□□□ -0.41
COL6A3-214ENST00000493608 FERMT2Q96AC1 680 aa12.52□□□□□ -0.41
COL6A3-214ENST00000493608 FGD4Q96M96 766 aa12.52□□□□□ -0.41
COL6A3-214ENST00000493608 TTC14Q96N46 770 aa12.52□□□□□ -0.41
COL6A3-214ENST00000493608 UBA5Q9GZZ9 404 aa12.52□□□□□ -0.41
COL6A3-214ENST00000493608 CPVLQ9H3G5 476 aa12.52□□□□□ -0.41
COL6A3-214ENST00000493608 A1CFQ9NQ94 594 aaKnown RBP12.52□□□□□ -0.41
COL6A3-214ENST00000493608 ZHX1Q9UKY1 873 aaPredicted RBP12.52□□□□□ -0.41
COL6A3-214ENST00000493608 CCPG1Q9ULG6 757 aa12.52□□□□□ -0.41
COL6A3-214ENST00000493608 CNPY2Q9Y2B0 182 aa12.52□□□□□ -0.41
COL6A3-214ENST00000493608 DDX49Q9Y6V7 483 aaKnown RBP12.52□□□□□ -0.41
COL6A3-214ENST00000493608 DNAH12Q6ZR08 3092 aa12.52□□□□□ -0.41
COL6A3-214ENST00000493608 GRXCR2A6NFK2 248 aa12.51□□□□□ -0.41
COL6A3-214ENST00000493608 KBTBD13C9JR72 458 aa12.51□□□□□ -0.41
COL6A3-214ENST00000493608 DNM1LO00429 736 aa12.51□□□□□ -0.41
COL6A3-214ENST00000493608 RARBP10826 455 aa12.51□□□□□ -0.41
COL6A3-214ENST00000493608 ADCYAP1R1P41586 468 aa12.51□□□□□ -0.41
COL6A3-214ENST00000493608 ZNF543Q08ER8 600 aa12.51□□□□□ -0.41
COL6A3-214ENST00000493608 BTNL9Q6UXG8 535 aa12.51□□□□□ -0.41
COL6A3-214ENST00000493608 NSMFQ6X4W1 530 aa12.51□□□□□ -0.41
COL6A3-214ENST00000493608 DHX30Q7L2E3 1194 aaKnown RBP eCLIP12.51□□□□□ -0.41
COL6A3-214ENST00000493608 IQCA1Q86XH1 822 aa12.51□□□□□ -0.41
COL6A3-214ENST00000493608 DGKHQ86XP1 1220 aa12.51□□□□□ -0.41
COL6A3-214ENST00000493608 RUFY2Q8WXA3 655 aa12.51□□□□□ -0.41
COL6A3-214ENST00000493608 PURBQ96QR8 312 aaKnown RBP12.51□□□□□ -0.41
COL6A3-214ENST00000493608 ZSCAN10Q96SZ4 725 aaPredicted RBP12.51□□□□□ -0.41
COL6A3-214ENST00000493608 RANBP17Q9H2T7 1088 aaKnown RBP12.51□□□□□ -0.41
COL6A3-214ENST00000493608 XPNPEP3Q9NQH7 507 aa12.51□□□□□ -0.41
COL6A3-214ENST00000493608 SOWAHBA6NEL2 793 aa12.5□□□□□ -0.41
COL6A3-214ENST00000493608 ICAM1P05362 532 aa12.5□□□□□ -0.41
COL6A3-214ENST00000493608 AKR1A1P14550 325 aa12.5□□□□□ -0.41
COL6A3-214ENST00000493608 ACVR2BQ13705 512 aa12.5□□□□□ -0.41
COL6A3-214ENST00000493608 TKFCQ3LXA3 575 aa12.5□□□□□ -0.41
COL6A3-214ENST00000493608 MAMDC4Q6UXC1 1216 aa12.5□□□□□ -0.41
COL6A3-214ENST00000493608 CYB5R4Q7L1T6 521 aa12.5□□□□□ -0.41
COL6A3-214ENST00000493608 ARMCX2Q7L311 632 aa12.5□□□□□ -0.41
COL6A3-214ENST00000493608 CCDC144CPQ8IYA2 1237 aa12.5□□□□□ -0.41
COL6A3-214ENST00000493608 ENAHQ8N8S7 591 aaPredicted RBP12.5□□□□□ -0.41
COL6A3-214ENST00000493608 FAM133AQ8N9E0 248 aa12.5□□□□□ -0.41
COL6A3-214ENST00000493608 PNMA1Q8ND90 353 aa12.5□□□□□ -0.41
COL6A3-214ENST00000493608 ANKK1Q8NFD2 765 aa12.5□□□□□ -0.41
COL6A3-214ENST00000493608 ZFRQ96KR1 1074 aaKnown RBP12.5□□□□□ -0.41
COL6A3-214ENST00000493608 KAT14Q9H8E8 782 aa12.5□□□□□ -0.41
COL6A3-214ENST00000493608 CDKN2AIPQ9NXV6 580 aaPredicted RBP12.5□□□□□ -0.41
COL6A3-214ENST00000493608 SEPT9Q9UHD8 586 aaPredicted RBP12.5□□□□□ -0.41
COL6A3-214ENST00000493608 NRBP1Q9UHY1 535 aa12.5□□□□□ -0.41
COL6A3-214ENST00000493608 FAM184BQ9ULE4 1060 aa12.5□□□□□ -0.41
COL6A3-214ENST00000493608 TAF6LQ9Y6J9 622 aa12.5□□□□□ -0.41
COL6A3-214ENST00000493608 SYNGAP1Q96PV0 1343 aa12.5□□□□□ -0.41
COL6A3-214ENST00000493608 LCTP09848 1927 aa12.49□□□□□ -0.41
COL6A3-214ENST00000493608 MYH6P13533 1939 aa12.49□□□□□ -0.41
COL6A3-214ENST00000493608 TNKSO95271 1327 aa12.49□□□□□ -0.41
COL6A3-214ENST00000493608 NFIBO00712 420 aa12.49□□□□□ -0.41
COL6A3-214ENST00000493608 SGSM2O43147 1006 aa12.49□□□□□ -0.41
COL6A3-214ENST00000493608 SNHG28P0DPA3 235 aa12.49□□□□□ -0.41
COL6A3-214ENST00000493608 FXR1P51114 621 aaKnown RBP eCLIP12.49□□□□□ -0.41
COL6A3-214ENST00000493608 RTP1P59025 263 aa12.49□□□□□ -0.41
COL6A3-214ENST00000493608 SLC39A5Q6ZMH5 540 aa12.49□□□□□ -0.41
COL6A3-214ENST00000493608 MSL3Q8N5Y2 521 aaKnown RBP12.49□□□□□ -0.41
COL6A3-214ENST00000493608 KRT23Q9C075 422 aa12.49□□□□□ -0.41
COL6A3-214ENST00000493608 PRO3102Q9H379 93 aa12.49□□□□□ -0.41
COL6A3-214ENST00000493608 CYP39A1Q9NYL5 469 aa12.49□□□□□ -0.41
COL6A3-214ENST00000493608 ATP11BQ9Y2G3 1177 aa12.49□□□□□ -0.41
COL6A3-214ENST00000493608 ASTN1O14525 1302 aa12.48□□□□□ -0.41
COL6A3-214ENST00000493608 RAD50Q92878 1312 aa12.48□□□□□ -0.41
COL6A3-214ENST00000493608 BAZ2BQ9UIF8 2168 aaKnown RBP12.48□□□□□ -0.41
COL6A3-214ENST00000493608 ADCY6O43306 1168 aa12.48□□□□□ -0.41
COL6A3-214ENST00000493608 CYP21A2P08686 494 aa12.48□□□□□ -0.41
COL6A3-214ENST00000493608 MAGEA10P43363 369 aaPredicted RBP12.48□□□□□ -0.41
COL6A3-214ENST00000493608 BAATQ14032 418 aaPredicted RBP12.48□□□□□ -0.41
COL6A3-214ENST00000493608 CCDC144BQ3MJ40 725 aa12.48□□□□□ -0.41
COL6A3-214ENST00000493608 CCDC178Q5BJE1 867 aa12.48□□□□□ -0.41
COL6A3-214ENST00000493608 EEPD1Q7L9B9 569 aa12.48□□□□□ -0.41
COL6A3-214ENST00000493608 CHST3Q7LGC8 479 aa12.48□□□□□ -0.41
COL6A3-214ENST00000493608 RNF180Q86T96 592 aa12.48□□□□□ -0.41
COL6A3-214ENST00000493608 ANKS1AQ92625 1134 aa12.48□□□□□ -0.41
COL6A3-214ENST00000493608 UBAC1Q9BSL1 405 aa12.48□□□□□ -0.41
COL6A3-214ENST00000493608 ABHD16BQ9H3Z7 469 aa12.48□□□□□ -0.41
COL6A3-214ENST00000493608 CNNM2Q9H8M5 875 aa12.48□□□□□ -0.41
COL6A3-214ENST00000493608 VAT1LQ9HCJ6 419 aa12.48□□□□□ -0.41
COL6A3-214ENST00000493608 RANBP2P49792 3224 aaKnown RBP12.47□□□□□ -0.41
COL6A3-214ENST00000493608 SYNRGQ9UMZ2 1314 aa12.47□□□□□ -0.41
COL6A3-214ENST00000493608 C11orf97A0A1B0GVM6 126 aaPredicted RBP12.47□□□□□ -0.41
COL6A3-214ENST00000493608 PTPDC1A2A3K4 754 aa12.47□□□□□ -0.41
COL6A3-214ENST00000493608 MYADML2A6NDP7 307 aa12.47□□□□□ -0.41
COL6A3-214ENST00000493608 PTGS1P23219 599 aa12.47□□□□□ -0.41
COL6A3-214ENST00000493608 MDM2Q00987 491 aaPredicted RBP12.47□□□□□ -0.41
COL6A3-214ENST00000493608 TRDNQ13061 729 aa12.47□□□□□ -0.41
COL6A3-214ENST00000493608 USH1GQ495M9 461 aa12.47□□□□□ -0.41
COL6A3-214ENST00000493608 GPATCH4Q5T3I0 446 aaKnown RBP12.47□□□□□ -0.41
COL6A3-214ENST00000493608 IFIT1BQ5T764 474 aaKnown RBP12.47□□□□□ -0.41
COL6A3-214ENST00000493608 STAG2Q8N3U4 1231 aa12.47□□□□□ -0.41
COL6A3-214ENST00000493608 GDF15Q99988 308 aa12.47□□□□□ -0.41
COL6A3-214ENST00000493608 KATNBL1Q9H079 304 aa12.47□□□□□ -0.41
COL6A3-214ENST00000493608 SENP2Q9HC62 589 aa12.47□□□□□ -0.41
COL6A3-214ENST00000493608 ASB14A6NK59 587 aa12.46□□□□□ -0.41
Retrieved 100 of 20,778 RNA–protein pairs in 30.3 ms