RNA–Protein interactions for RNA: YMR223W

UBP8, Transcript of Ubiquitin-specific protease component of the SAGA acetylation complex, yeastyeast

Gene UBP8, Length 1,416 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
UBP8YMR223W PRP42Q03776 544 aaKnown RBP3.43□□□□□ -1.86
UBP8YMR223W RNH1Q04740 348 aa3.43□□□□□ -1.86
UBP8YMR223W BLS1Q06071 122 aa3.43□□□□□ -1.86
UBP8YMR223W PLP2Q12017 286 aa3.43□□□□□ -1.86
UBP8YMR223W HXK2P04807 486 aaKnown RBP3.42□□□□□ -1.86
UBP8YMR223W TYR1P20049 452 aa3.42□□□□□ -1.86
UBP8YMR223W PAH1P32567 862 aa3.42□□□□□ -1.86
UBP8YMR223W AGP2P38090 596 aa3.42□□□□□ -1.86
UBP8YMR223W PCA1P38360 1216 aa3.42□□□□□ -1.86
UBP8YMR223W ARP1P38696 384 aa3.42□□□□□ -1.86
UBP8YMR223W RPH1P39956 796 aa3.42□□□□□ -1.86
UBP8YMR223W SEC9P40357 651 aa3.42□□□□□ -1.86
UBP8YMR223W IRC6P43615 237 aa3.42□□□□□ -1.86
UBP8YMR223W LAP3Q01532 483 aaKnown RBP RIP-Chip data3.42□□□□□ -1.86not detected
UBP8YMR223W RDR1Q08904 546 aa3.42□□□□□ -1.86
UBP8YMR223W APL4Q12028 832 aa3.42□□□□□ -1.86
UBP8YMR223W SMF3Q12078 473 aaPredicted RBP3.42□□□□□ -1.86
UBP8YMR223W PGA3Q12746 312 aaKnown RBP3.42□□□□□ -1.86
UBP8YMR223W SSM4P40318 1319 aa3.41□□□□□ -1.86
UBP8YMR223W RED1P14291 827 aa3.41□□□□□ -1.86
UBP8YMR223W TRX1P22217 103 aaKnown RBP3.41□□□□□ -1.86
UBP8YMR223W SNC1P31109 117 aa3.41□□□□□ -1.86
UBP8YMR223W IME2P32581 645 aa3.41□□□□□ -1.86
UBP8YMR223W YNK1P36010 153 aaKnown RBP3.41□□□□□ -1.86
UBP8YMR223W BYE1P36106 594 aa3.41□□□□□ -1.86
UBP8YMR223W AXL2P38928 823 aa3.41□□□□□ -1.86
UBP8YMR223W AXL1P40851 1208 aa3.41□□□□□ -1.86
UBP8YMR223W CUE5Q08412 411 aaKnown RBP3.41□□□□□ -1.86
UBP8YMR223W TMA16Q08687 178 aa3.41□□□□□ -1.86
UBP8YMR223W REX3Q12090 404 aa3.41□□□□□ -1.86
UBP8YMR223W NFI1Q12216 726 aa3.41□□□□□ -1.86
UBP8YMR223W ERG27Q12452 347 aaKnown RBP3.41□□□□□ -1.86
UBP8YMR223W SET6Q12529 373 aa3.41□□□□□ -1.86
UBP8YMR223W STF1P01098 86 aa3.4□□□□□ -1.87
UBP8YMR223W TY2A-LR1P0C2J4 438 aa3.4□□□□□ -1.87
UBP8YMR223W TY2A-FP0CX61 438 aa3.4□□□□□ -1.87
UBP8YMR223W TY2A-GR2P0CX62 438 aa3.4□□□□□ -1.87
UBP8YMR223W MTF1P14908 341 aaKnown RBP3.4□□□□□ -1.87
UBP8YMR223W PDX1P16451 410 aa3.4□□□□□ -1.87
UBP8YMR223W REC107P21651 314 aa3.4□□□□□ -1.87
UBP8YMR223W MCK1P21965 375 aaKnown RBP3.4□□□□□ -1.87
UBP8YMR223W TY2A-CP25383 438 aa3.4□□□□□ -1.87
UBP8YMR223W RPS2P25443 254 aaKnown RBP3.4□□□□□ -1.87
UBP8YMR223W CBF2P32504 956 aa3.4□□□□□ -1.87
UBP8YMR223W TFB1P32776 642 aa3.4□□□□□ -1.87
UBP8YMR223W PPQ1P32945 549 aa3.4□□□□□ -1.87
UBP8YMR223W RIB7P33312 244 aa3.4□□□□□ -1.87
UBP8YMR223W CNS1P33313 385 aa3.4□□□□□ -1.87
UBP8YMR223W UBA4P38820 440 aa3.4□□□□□ -1.87
UBP8YMR223W LSM5P40089 93 aaKnown RBP3.4□□□□□ -1.87
UBP8YMR223W GCD10P41814 478 aa3.4□□□□□ -1.87
UBP8YMR223W RMD8P43620 662 aa3.4□□□□□ -1.87
UBP8YMR223W ARC35P53731 342 aaKnown RBP3.4□□□□□ -1.87
UBP8YMR223W ZDS2P54786 942 aa3.4□□□□□ -1.87
UBP8YMR223W TY2A-DR2Q03483 438 aa3.4□□□□□ -1.87
UBP8YMR223W YMR155WQ03795 547 aa3.4□□□□□ -1.87
UBP8YMR223W FMP45Q07651 309 aa3.4□□□□□ -1.87
UBP8YMR223W TY2A-BQ12260 438 aa3.4□□□□□ -1.87
UBP8YMR223W TY2A-OR2Q12293 438 aa3.4□□□□□ -1.87
UBP8YMR223W TY2A-DR1Q12392 438 aa3.4□□□□□ -1.87
UBP8YMR223W TY2A-OR1Q12439 438 aa3.4□□□□□ -1.87
UBP8YMR223W TY2A-DR3Q99303 438 aa3.4□□□□□ -1.87
UBP8YMR223W RPC40P07703 335 aaKnown RBP3.39□□□□□ -1.87
UBP8YMR223W AGA1P32323 725 aa3.39□□□□□ -1.87
UBP8YMR223W NDC1P32500 655 aa3.39□□□□□ -1.87
UBP8YMR223W NPL6P32832 435 aa3.39□□□□□ -1.87
UBP8YMR223W XRS2P33301 854 aa3.39□□□□□ -1.87
UBP8YMR223W TIF5P38431 405 aaKnown RBP3.39□□□□□ -1.87
UBP8YMR223W RTT105P40063 208 aa3.39□□□□□ -1.87
UBP8YMR223W PCL7P40186 285 aa3.39□□□□□ -1.87
UBP8YMR223W RIC1P40395 1056 aa3.39□□□□□ -1.87
UBP8YMR223W RRT6P53117 311 aaPredicted RBP3.39□□□□□ -1.87
UBP8YMR223W YDR131CQ03899 556 aa3.39□□□□□ -1.87
UBP8YMR223W RBA50Q04418 439 aa3.39□□□□□ -1.87
UBP8YMR223W MFB1Q04922 465 aa3.39□□□□□ -1.87
UBP8YMR223W ADE13Q05911 482 aaKnown RBP3.39□□□□□ -1.87
UBP8YMR223W YLR345WQ06137 509 aa3.39□□□□□ -1.87
UBP8YMR223W ARV1Q06541 321 aa3.39□□□□□ -1.87
UBP8YMR223W SAC3P46674 1301 aa3.38□□□□□ -1.87
UBP8YMR223W MET17P06106 444 aa3.38□□□□□ -1.87
UBP8YMR223W SNF1P06782 633 aaKnown RBP3.38□□□□□ -1.87
UBP8YMR223W MTF2P10849 440 aa3.38□□□□□ -1.87
UBP8YMR223W PET123P17558 318 aa3.38□□□□□ -1.87
UBP8YMR223W MNE1P24720 663 aa3.38□□□□□ -1.87
UBP8YMR223W YCL049CP25577 312 aa3.38□□□□□ -1.87
UBP8YMR223W SPC110P32380 944 aa3.38□□□□□ -1.87
UBP8YMR223W VPS17P32913 551 aa3.38□□□□□ -1.87
UBP8YMR223W UIP3P39547 235 aa3.38□□□□□ -1.87
UBP8YMR223W NPR2P39923 615 aa3.38□□□□□ -1.87
UBP8YMR223W KAP123P40069 1113 aaKnown RBP3.38□□□□□ -1.87
UBP8YMR223W RPR2P40571 144 aa3.38□□□□□ -1.87
UBP8YMR223W DPB11P47027 764 aaPredicted RBP3.38□□□□□ -1.87
UBP8YMR223W COG1P53079 417 aa3.38□□□□□ -1.87
UBP8YMR223W ARE2P53629 642 aaKnown RBP3.38□□□□□ -1.87
UBP8YMR223W KEL3Q08979 651 aaPredicted RBP3.38□□□□□ -1.87
UBP8YMR223W ATG9Q12142 997 aa3.38□□□□□ -1.87
UBP8YMR223W COX17Q12287 69 aa3.38□□□□□ -1.87
UBP8YMR223W SUI2P20459 304 aaKnown RBP3.37□□□□□ -1.87
UBP8YMR223W RRP7P25368 297 aaPredicted RBP3.37□□□□□ -1.87
UBP8YMR223W DAL80P26343 269 aa3.37□□□□□ -1.87
Retrieved 100 of 5,963 RNA–protein pairs in 10.3 ms