RNA–Protein interactions for RNA: YKL012W

PRP40, Transcript of U1 snRNP protein involved in splicing, yeastyeast

Gene PRP40, Length 1,752 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
PRP40YKL012W ANP1P32629 500 aa5.7□□□□□ -1.5
PRP40YKL012W YME2P32843 850 aa5.7□□□□□ -1.5
PRP40YKL012W LYS20P48570 428 aaKnown RBP5.7□□□□□ -1.5
PRP40YKL012W CAF130P53280 1122 aaPredicted RBP5.7□□□□□ -1.5
PRP40YKL012W ASI1P54074 624 aa5.7□□□□□ -1.5
PRP40YKL012W TOF2Q02208 771 aa5.7□□□□□ -1.5
PRP40YKL012W PEX25Q02969 394 aa5.7□□□□□ -1.5
PRP40YKL012W DON1Q05610 365 aa5.7□□□□□ -1.5
PRP40YKL012W IRC3Q06683 689 aa5.7□□□□□ -1.5
PRP40YKL012W YLR111WQ12528 110 aa5.7□□□□□ -1.5
PRP40YKL012W RPL31BP0C2H9 113 aaKnown RBP5.69□□□□□ -1.5
PRP40YKL012W PUP2P32379 260 aa5.69□□□□□ -1.5
PRP40YKL012W TUL1P36096 758 aa5.69□□□□□ -1.5
PRP40YKL012W STU2P46675 888 aa5.69□□□□□ -1.5
PRP40YKL012W EAF7P53911 425 aaKnown RBP5.69□□□□□ -1.5
PRP40YKL012W ADE13Q05911 482 aaKnown RBP5.69□□□□□ -1.5
PRP40YKL012W ATG26Q06321 1198 aa5.69□□□□□ -1.5
PRP40YKL012W SLK19Q08581 821 aaKnown RBP5.69□□□□□ -1.5
PRP40YKL012W NUP1P20676 1076 aa5.68□□□□□ -1.5
PRP40YKL012W IDH2P28241 369 aaKnown RBP5.68□□□□□ -1.5
PRP40YKL012W MTR2P34232 184 aaKnown RBP5.68□□□□□ -1.5
PRP40YKL012W TPO3Q06451 622 aa5.68□□□□□ -1.5
PRP40YKL012W SPE3Q12074 293 aaKnown RBP5.68□□□□□ -1.5
PRP40YKL012W PPH22P23595 377 aa5.67□□□□□ -1.5
PRP40YKL012W RRP7P25368 297 aaPredicted RBP5.67□□□□□ -1.5
PRP40YKL012W ADY2P25613 283 aa5.67□□□□□ -1.5
PRP40YKL012W NET1P47035 1189 aa5.67□□□□□ -1.5
PRP40YKL012W YMR160WQ03823 816 aa5.67□□□□□ -1.5
PRP40YKL012W CTF3Q12748 733 aa5.67□□□□□ -1.5
PRP40YKL012W PRP2P20095 876 aaPredicted RBP5.67□□□□□ -1.5
PRP40YKL012W GAC1P28006 793 aa5.67□□□□□ -1.5
PRP40YKL012W MGM1P32266 881 aa5.67□□□□□ -1.5
PRP40YKL012W THI2P38141 450 aa5.67□□□□□ -1.5
PRP40YKL012W RRT2P38332 387 aa5.67□□□□□ -1.5
PRP40YKL012W AIM22P47051 409 aa5.67□□□□□ -1.5
PRP40YKL012W ATP22P50273 684 aaPredicted RBP5.67□□□□□ -1.5
PRP40YKL012W PYK2P52489 506 aaKnown RBP5.67□□□□□ -1.5
PRP40YKL012W YGR126WP53274 230 aa5.67□□□□□ -1.5
PRP40YKL012W YDR286CQ05530 114 aa5.67□□□□□ -1.5
PRP40YKL012W FRE3Q08905 711 aa5.67□□□□□ -1.5
PRP40YKL012W NCE102Q12207 173 aaRIP-Chip data5.67□□□□□ -1.5not detected
PRP40YKL012W TY1B-DR4Q07793 1604 aa5.66□□□□□ -1.5
PRP40YKL012W CBP1P07252 654 aa5.66□□□□□ -1.5
PRP40YKL012W NIP100P33420 868 aa5.66□□□□□ -1.5
PRP40YKL012W UBA4P38820 440 aa5.66□□□□□ -1.5
PRP40YKL012W QRI1P43123 477 aaKnown RBP5.66□□□□□ -1.5
PRP40YKL012W TAX4P47030 604 aa5.66□□□□□ -1.5
PRP40YKL012W SUI2P20459 304 aaKnown RBP5.65□□□□□ -1.5
PRP40YKL012W KRR1P25586 316 aaPredicted RBP5.65□□□□□ -1.5
PRP40YKL012W HOT13P36078 116 aa5.65□□□□□ -1.5
PRP40YKL012W PIM1P36775 1133 aa5.65□□□□□ -1.5
PRP40YKL012W VPS41P38959 992 aa5.65□□□□□ -1.5
PRP40YKL012W ALK1P43633 760 aaKnown RBP5.65□□□□□ -1.5
PRP40YKL012W BPL1P48445 690 aaPredicted RBP5.65□□□□□ -1.5
PRP40YKL012W CUL3P53202 744 aa5.65□□□□□ -1.5
PRP40YKL012W YGR111WP53265 400 aa5.65□□□□□ -1.5
PRP40YKL012W YNL144CP53907 740 aa5.65□□□□□ -1.5
PRP40YKL012W SWF1Q04629 336 aa5.65□□□□□ -1.5
PRP40YKL012W PGC1Q08959 321 aa5.65□□□□□ -1.5
PRP40YKL012W SPB1P25582 841 aaPredicted RBP5.65□□□□□ -1.51
PRP40YKL012W EFM4P40516 257 aa5.65□□□□□ -1.51
PRP40YKL012W ULP2P40537 1034 aaPredicted RBP5.65□□□□□ -1.51
PRP40YKL012W IRC7P43623 340 aa5.65□□□□□ -1.51
PRP40YKL012W ATG27P46989 271 aa5.65□□□□□ -1.51
PRP40YKL012W UBP8P50102 471 aa5.65□□□□□ -1.51
PRP40YKL012W BTN2P53286 410 aa5.65□□□□□ -1.51
PRP40YKL012W MEH1Q02205 184 aa5.65□□□□□ -1.51
PRP40YKL012W RRP45Q05636 305 aaKnown RBP5.65□□□□□ -1.51
PRP40YKL012W YDL057WQ07379 328 aa5.65□□□□□ -1.51
PRP40YKL012W SMF3Q12078 473 aaPredicted RBP5.65□□□□□ -1.51
PRP40YKL012W TCB3Q03640 1545 aaKnown RBP5.64□□□□□ -1.51
PRP40YKL012W PEP4P07267 405 aaKnown RBP5.64□□□□□ -1.51
PRP40YKL012W YIM1P28625 365 aa5.64□□□□□ -1.51
PRP40YKL012W RPS0AP32905 252 aaKnown RBP5.64□□□□□ -1.51
PRP40YKL012W LTV1P34078 463 aa5.64□□□□□ -1.51
PRP40YKL012W NTC20P38302 140 aaPredicted RBP5.64□□□□□ -1.51
PRP40YKL012W MBB1P39534 108 aa5.64□□□□□ -1.51
PRP40YKL012W URB2P47108 1174 aa5.64□□□□□ -1.51
PRP40YKL012W YGL138CP53122 345 aa5.64□□□□□ -1.51
PRP40YKL012W SLG1P54867 378 aa5.64□□□□□ -1.51
PRP40YKL012W SKO1Q02100 647 aa5.64□□□□□ -1.51
PRP40YKL012W HOT1Q03213 719 aa5.64□□□□□ -1.51
PRP40YKL012W RPN5Q12250 445 aaKnown RBP5.64□□□□□ -1.51
PRP40YKL012W COR1P07256 457 aa5.63□□□□□ -1.51
PRP40YKL012W SNF3P10870 884 aa5.63□□□□□ -1.51
PRP40YKL012W RAD14P28519 371 aa5.63□□□□□ -1.51
PRP40YKL012W SLM4P38247 162 aa5.63□□□□□ -1.51
PRP40YKL012W RIX1P38883 763 aaPredicted RBP5.63□□□□□ -1.51
PRP40YKL012W COS5P47187 383 aa5.63□□□□□ -1.51
PRP40YKL012W YGR149WP48236 432 aa5.63□□□□□ -1.51
PRP40YKL012W FMS1P50264 508 aa5.63□□□□□ -1.51
PRP40YKL012W YGL108CP53139 140 aa5.63□□□□□ -1.51
PRP40YKL012W RSF1Q05043 376 aa5.63□□□□□ -1.51
PRP40YKL012W COS7Q07788 383 aa5.63□□□□□ -1.51
PRP40YKL012W SIL1Q08199 421 aa5.63□□□□□ -1.51
PRP40YKL012W SKS1Q12505 502 aa5.63□□□□□ -1.51
PRP40YKL012W SPS4P09937 338 aa5.62□□□□□ -1.51
PRP40YKL012W SHP1P34223 423 aa5.62□□□□□ -1.51
PRP40YKL012W YHR054CP38780 354 aa5.62□□□□□ -1.51
PRP40YKL012W YHR210CP38893 341 aa5.62□□□□□ -1.51
Retrieved 100 of 5,963 RNA–protein pairs in 13.4 ms