RNA–Protein interactions for RNA: YCR093W

CDC39, Transcript of Component of the CCR4-NOT1 core complex, yeastyeast

Gene CDC39, Length 6,327 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
CDC39YCR093W YPK3P38070 525 aa1.22□□□□□ -2.21
CDC39YCR093W ATP3P38077 311 aaKnown RBP1.22□□□□□ -2.21
CDC39YCR093W QRI1P43123 477 aaKnown RBP1.22□□□□□ -2.21
CDC39YCR093W DLD2P46681 530 aaKnown RBP1.22□□□□□ -2.21
CDC39YCR093W PEX25Q02969 394 aa1.22□□□□□ -2.21
CDC39YCR093W RRN11Q04712 507 aa1.22□□□□□ -2.21
CDC39YCR093W TEN1Q07921 160 aa1.22□□□□□ -2.21
CDC39YCR093W MED1Q12321 566 aa1.22□□□□□ -2.21
CDC39YCR093W SMC6Q12749 1114 aa1.22□□□□□ -2.21
CDC39YCR093W NUP159P40477 1460 aa1.22□□□□□ -2.21
CDC39YCR093W PGK1P00560 416 aaKnown RBP1.22□□□□□ -2.21
CDC39YCR093W CBS1P14066 229 aa1.22□□□□□ -2.21
CDC39YCR093W CBF2P32504 956 aa1.22□□□□□ -2.21
CDC39YCR093W FRD1P32614 470 aaKnown RBP1.22□□□□□ -2.21
CDC39YCR093W MNS1P32906 549 aa1.22□□□□□ -2.21
CDC39YCR093W EXO84P38261 753 aa1.22□□□□□ -2.21
CDC39YCR093W NPR2P39923 615 aa1.22□□□□□ -2.21
CDC39YCR093W MSY1P48527 492 aa1.22□□□□□ -2.21
CDC39YCR093W TWF1P53250 332 aa1.22□□□□□ -2.21
CDC39YCR093W PRM6Q04705 352 aa1.22□□□□□ -2.21
CDC39YCR093W DCI1Q08558 271 aa1.22□□□□□ -2.21
CDC39YCR093W GPN2Q08726 347 aaPredicted RBP1.22□□□□□ -2.21
CDC39YCR093W RAV1P47104 1357 aa1.22□□□□□ -2.21
CDC39YCR093W STU1P38198 1513 aa1.22□□□□□ -2.21
CDC39YCR093W YPR089WO13585 888 aa1.22□□□□□ -2.21
CDC39YCR093W ARG3P05150 338 aa1.22□□□□□ -2.21
CDC39YCR093W LEU4P06208 619 aaKnown RBP1.22□□□□□ -2.21
CDC39YCR093W LTV1P34078 463 aa1.22□□□□□ -2.21
CDC39YCR093W YBR144CP34215 104 aa1.22□□□□□ -2.21
CDC39YCR093W MAL33P38157 468 aa1.22□□□□□ -2.21
CDC39YCR093W EHT1P38295 451 aa1.22□□□□□ -2.21
CDC39YCR093W YJL068CP40363 299 aa1.22□□□□□ -2.21
CDC39YCR093W DIM1P41819 318 aaKnown RBP1.22□□□□□ -2.21
CDC39YCR093W SNF12P53628 566 aa1.22□□□□□ -2.21
CDC39YCR093W ARC35P53731 342 aaKnown RBP1.22□□□□□ -2.21
CDC39YCR093W SOV1Q04748 898 aa1.22□□□□□ -2.21
CDC39YCR093W ASM4Q05166 528 aa1.22□□□□□ -2.21
CDC39YCR093W LUC7Q07508 261 aaPredicted RBP1.22□□□□□ -2.21
CDC39YCR093W GSH2Q08220 491 aa1.22□□□□□ -2.21
CDC39YCR093W AFT2Q08957 416 aa1.22□□□□□ -2.21
CDC39YCR093W NUP1P20676 1076 aa1.22□□□□□ -2.21
CDC39YCR093W ERG8P24521 451 aa1.22□□□□□ -2.21
CDC39YCR093W MTH1P35198 433 aa1.22□□□□□ -2.21
CDC39YCR093W BYE1P36106 594 aa1.22□□□□□ -2.21
CDC39YCR093W RIM2P38127 377 aa1.22□□□□□ -2.21
CDC39YCR093W LAG1P38703 411 aa1.22□□□□□ -2.21
CDC39YCR093W BUD16P39988 312 aa1.22□□□□□ -2.21
CDC39YCR093W YPT11P48559 417 aa1.22□□□□□ -2.21
CDC39YCR093W YML6P51998 286 aa1.22□□□□□ -2.21
CDC39YCR093W CEG1Q01159 459 aaPredicted RBP1.22□□□□□ -2.21
CDC39YCR093W RPS15Q01855 142 aaKnown RBP1.22□□□□□ -2.21
CDC39YCR093W SPN1Q06505 410 aaPredicted RBP1.22□□□□□ -2.21
CDC39YCR093W YAP7Q08182 245 aa1.22□□□□□ -2.21
CDC39YCR093W SWE1P32944 819 aa1.22□□□□□ -2.21
CDC39YCR093W FTH1P38310 465 aa1.22□□□□□ -2.21
CDC39YCR093W MAM33P40513 266 aa1.22□□□□□ -2.21
CDC39YCR093W RAD33Q04231 177 aa1.22□□□□□ -2.21
CDC39YCR093W SUL2Q12325 893 aa1.22□□□□□ -2.21
CDC39YCR093W ARG4P04076 463 aaPredicted RBP1.21□□□□□ -2.22
CDC39YCR093W LPD1P09624 499 aaKnown RBP1.21□□□□□ -2.22
CDC39YCR093W MTF1P14908 341 aaKnown RBP1.21□□□□□ -2.22
CDC39YCR093W TYR1P20049 452 aa1.21□□□□□ -2.22
CDC39YCR093W SEC62P21825 274 aa1.21□□□□□ -2.22
CDC39YCR093W CLB2P24869 491 aa1.21□□□□□ -2.22
CDC39YCR093W MGM1P32266 881 aa1.21□□□□□ -2.22
CDC39YCR093W RAD24P32641 659 aa1.21□□□□□ -2.22
CDC39YCR093W ADE17P38009 592 aaKnown RBP1.21□□□□□ -2.22
CDC39YCR093W MSR1P38714 643 aa1.21□□□□□ -2.22
CDC39YCR093W YHR054CP38780 354 aa1.21□□□□□ -2.22
CDC39YCR093W YIL169CP40442 995 aa1.21□□□□□ -2.22
CDC39YCR093W YJL107CP42947 387 aa1.21□□□□□ -2.22
CDC39YCR093W YGR149WP48236 432 aa1.21□□□□□ -2.22
CDC39YCR093W YGL117WP53133 265 aa1.21□□□□□ -2.22
CDC39YCR093W MRD1Q06106 887 aaKnown RBP1.21□□□□□ -2.22
CDC39YCR093W YEH1Q07804 573 aa1.21□□□□□ -2.22
CDC39YCR093W GEP3Q08622 556 aa1.21□□□□□ -2.22
CDC39YCR093W PKH2Q12236 1081 aaKnown RBP1.21□□□□□ -2.22
CDC39YCR093W STF1P01098 86 aa1.21□□□□□ -2.22
CDC39YCR093W YAR066WP0CX18 203 aa1.21□□□□□ -2.22
CDC39YCR093W YHR214WP0CX19 203 aa1.21□□□□□ -2.22
CDC39YCR093W MGR1P25573 417 aa1.21□□□□□ -2.22
CDC39YCR093W ADY2P25613 283 aa1.21□□□□□ -2.22
CDC39YCR093W SSE2P32590 693 aaKnown RBP1.21□□□□□ -2.22
CDC39YCR093W HES1P35843 434 aa1.21□□□□□ -2.22
CDC39YCR093W PCL6P40038 420 aa1.21□□□□□ -2.22
CDC39YCR093W XBP1P40489 647 aa1.21□□□□□ -2.22
CDC39YCR093W LAM5P43560 674 aa1.21□□□□□ -2.22
CDC39YCR093W NMD5P46970 1048 aa1.21□□□□□ -2.22
CDC39YCR093W SMM1P53720 384 aaKnown RBP1.21□□□□□ -2.22
CDC39YCR093W RCR2Q03446 210 aaKnown RBP1.21□□□□□ -2.22
CDC39YCR093W TRM8Q12009 286 aa1.21□□□□□ -2.22
CDC39YCR093W CRC1Q12289 327 aa1.21□□□□□ -2.22
CDC39YCR093W CDC16P09798 840 aa1.21□□□□□ -2.22
CDC39YCR093W GSY2P27472 705 aa1.21□□□□□ -2.22
CDC39YCR093W URK1P27515 501 aa1.21□□□□□ -2.22
CDC39YCR093W MSS1P32559 526 aaPredicted RBP1.21□□□□□ -2.22
CDC39YCR093W SPT10P35208 640 aa1.21□□□□□ -2.22
CDC39YCR093W YBR138CP38277 524 aa1.21□□□□□ -2.22
CDC39YCR093W ERG7P38604 731 aa1.21□□□□□ -2.22
CDC39YCR093W TIF4631P39935 952 aaKnown RBP1.21□□□□□ -2.22
Retrieved 100 of 5,963 RNA–protein pairs in 53.5 ms