RNA–Protein interactions for RNA: YAL040C

CLN3, Transcript of G1 cyclin involved in cell cycle progression, yeast

Gene CLN3, Length 1,743 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
CLN3	YAL040C	MMS21	P38632	267 aa		2.33	□□□□□ -2.04
CLN3	YAL040C	RPP1	P38786	293 aa		2.33	□□□□□ -2.04
CLN3	YAL040C	SWD1	P39706	426 aa		2.33	□□□□□ -2.04
CLN3	YAL040C	YMR134W	P40207	237 aa		2.33	□□□□□ -2.04
CLN3	YAL040C	YIL054W	P40524	105 aa		2.33	□□□□□ -2.04
CLN3	YAL040C	IMA5	P40884	581 aa		2.33	□□□□□ -2.04
CLN3	YAL040C	YJR054W	P47114	497 aa		2.33	□□□□□ -2.04
CLN3	YAL040C	MUP1	P50276	574 aa		2.33	□□□□□ -2.04
CLN3	YAL040C	MND1	P53102	219 aa		2.33	□□□□□ -2.04
CLN3	YAL040C	SPC98	P53540	846 aa		2.33	□□□□□ -2.04
CLN3	YAL040C	ARE2	P53629	642 aa	Known RBP	2.33	□□□□□ -2.04
CLN3	YAL040C	YNL040W	P53960	456 aa	Predicted RBP	2.33	□□□□□ -2.04
CLN3	YAL040C	STP1	Q00947	519 aa		2.33	□□□□□ -2.04
CLN3	YAL040C	MTG1	Q03151	367 aa	Predicted RBP	2.33	□□□□□ -2.04
CLN3	YAL040C	RCR2	Q03446	210 aa	Known RBP	2.33	□□□□□ -2.04
CLN3	YAL040C	USA1	Q03714	838 aa		2.33	□□□□□ -2.04
CLN3	YAL040C	YMR160W	Q03823	816 aa		2.33	□□□□□ -2.04
CLN3	YAL040C	GRX3	Q03835	250 aa		2.33	□□□□□ -2.04
CLN3	YAL040C	ARO80	Q04052	950 aa		2.33	□□□□□ -2.04
CLN3	YAL040C	MFB1	Q04922	465 aa		2.33	□□□□□ -2.04
CLN3	YAL040C	CRR1	Q05790	422 aa		2.33	□□□□□ -2.04
CLN3	YAL040C	DNL4	Q08387	944 aa	Predicted RBP	2.33	□□□□□ -2.04
CLN3	YAL040C	DDC1	Q08949	612 aa		2.33	□□□□□ -2.04
CLN3	YAL040C	TRM8	Q12009	286 aa		2.33	□□□□□ -2.04
CLN3	YAL040C	YDR018C	Q12185	396 aa		2.33	□□□□□ -2.04
CLN3	YAL040C	NDJ1	Q12366	352 aa		2.33	□□□□□ -2.04
CLN3	YAL040C	IRA1	P18963	3092 aa		2.33	□□□□□ -2.04
CLN3	YAL040C	JIP3	O13555	125 aa		2.32	□□□□□ -2.04
CLN3	YAL040C	DIF1	O13577	133 aa		2.32	□□□□□ -2.04
CLN3	YAL040C	PAB1	P04147	577 aa	Known RBP RIP-Chip data	2.32	□□□□□ -2.04	not detected
CLN3	YAL040C	MIS1	P09440	975 aa	Known RBP	2.32	□□□□□ -2.04
CLN3	YAL040C	CDC24	P11433	854 aa	Predicted RBP	2.32	□□□□□ -2.04
CLN3	YAL040C	PEP5	P12868	1029 aa		2.32	□□□□□ -2.04
CLN3	YAL040C	HEM15	P16622	393 aa		2.32	□□□□□ -2.04
CLN3	YAL040C	CDC43	P18898	376 aa		2.32	□□□□□ -2.04
CLN3	YAL040C	SIR1	P21691	654 aa		2.32	□□□□□ -2.04
CLN3	YAL040C	LRE1	P25579	583 aa	Known RBP	2.32	□□□□□ -2.04
CLN3	YAL040C	GAC1	P28006	793 aa		2.32	□□□□□ -2.04
CLN3	YAL040C	PUP2	P32379	260 aa		2.32	□□□□□ -2.04
CLN3	YAL040C	HXT4	P32467	576 aa		2.32	□□□□□ -2.04
CLN3	YAL040C	ORC2	P32833	620 aa		2.32	□□□□□ -2.04
CLN3	YAL040C	BUD2	P33314	1104 aa		2.32	□□□□□ -2.04
CLN3	YAL040C	SRB2	P34162	210 aa		2.32	□□□□□ -2.04
CLN3	YAL040C	OLA1	P38219	394 aa	Known RBP	2.32	□□□□□ -2.04
CLN3	YAL040C	IFA38	P38286	347 aa		2.32	□□□□□ -2.04
CLN3	YAL040C	SSZ1	P38788	538 aa	Known RBP	2.32	□□□□□ -2.04
CLN3	YAL040C	YHR218W	P38899	603 aa		2.32	□□□□□ -2.04
CLN3	YAL040C	VPS41	P38959	992 aa		2.32	□□□□□ -2.04
CLN3	YAL040C	POP2	P39008	433 aa		2.32	□□□□□ -2.04
CLN3	YAL040C	BEM4	P39011	633 aa		2.32	□□□□□ -2.04
CLN3	YAL040C	ALD5	P40047	520 aa	Known RBP	2.32	□□□□□ -2.04
CLN3	YAL040C	DSE1	P40077	573 aa		2.32	□□□□□ -2.04
CLN3	YAL040C	YJL068C	P40363	299 aa		2.32	□□□□□ -2.04
CLN3	YAL040C	SNM1	P40993	198 aa		2.32	□□□□□ -2.04
CLN3	YAL040C	ARF3	P40994	183 aa	RIP-Chip data	2.32	□□□□□ -2.04	not detected
CLN3	YAL040C	URB2	P47108	1174 aa		2.32	□□□□□ -2.04
CLN3	YAL040C	ASI2	P53895	289 aa		2.32	□□□□□ -2.04
CLN3	YAL040C	RNY1	Q02933	434 aa	Known RBP	2.32	□□□□□ -2.04
CLN3	YAL040C	YML119W	Q03208	357 aa		2.32	□□□□□ -2.04
CLN3	YAL040C	TLG1	Q03322	224 aa		2.32	□□□□□ -2.04
CLN3	YAL040C	YDR131C	Q03899	556 aa		2.32	□□□□□ -2.04
CLN3	YAL040C	TAF9	Q05027	157 aa		2.32	□□□□□ -2.04
CLN3	YAL040C	KAP95	Q06142	861 aa	Known RBP	2.32	□□□□□ -2.04
CLN3	YAL040C	PIG1	Q06216	648 aa		2.32	□□□□□ -2.04
CLN3	YAL040C	MRH1	Q12117	320 aa	Predicted RBP	2.32	□□□□□ -2.04
CLN3	YAL040C	MSL5	Q12186	476 aa	Known RBP RIP-Chip data	2.32	□□□□□ -2.04	not detected
CLN3	YAL040C	RUD3	Q12234	484 aa	Known RBP	2.32	□□□□□ -2.04
CLN3	YAL040C	PKH2	Q12236	1081 aa	Known RBP	2.32	□□□□□ -2.04
CLN3	YAL040C	TEF1	P02994	458 aa	Known RBP	2.31	□□□□□ -2.04
CLN3	YAL040C	GCN4	P03069	281 aa		2.31	□□□□□ -2.04
CLN3	YAL040C	GAL80	P04387	435 aa		2.31	□□□□□ -2.04
CLN3	YAL040C	HIP1	P06775	603 aa		2.31	□□□□□ -2.04
CLN3	YAL040C	YML002W	P0CF17	737 aa		2.31	□□□□□ -2.04
CLN3	YAL040C	PUT4	P15380	627 aa		2.31	□□□□□ -2.04
CLN3	YAL040C	POL3	P15436	1097 aa		2.31	□□□□□ -2.04
CLN3	YAL040C	BET2	P20133	325 aa		2.31	□□□□□ -2.04
CLN3	YAL040C	SLY1	P22213	666 aa		2.31	□□□□□ -2.04
CLN3	YAL040C	ILV6	P25605	309 aa	Known RBP	2.31	□□□□□ -2.04
CLN3	YAL040C	ADK2	P26364	225 aa		2.31	□□□□□ -2.04
CLN3	YAL040C	MEI4	P29467	408 aa		2.31	□□□□□ -2.04
CLN3	YAL040C	MF(ALPHA)2	P32435	120 aa		2.31	□□□□□ -2.04
CLN3	YAL040C	RPN2	P32565	945 aa	Known RBP	2.31	□□□□□ -2.04
CLN3	YAL040C	UBC6	P33296	250 aa	Predicted RBP	2.31	□□□□□ -2.04
CLN3	YAL040C	CCL1	P37366	393 aa		2.31	□□□□□ -2.04
CLN3	YAL040C	YMC2	P38087	329 aa		2.31	□□□□□ -2.04
CLN3	YAL040C	SWC5	P38326	303 aa		2.31	□□□□□ -2.04
CLN3	YAL040C	SAK1	P38990	1142 aa		2.31	□□□□□ -2.04
CLN3	YAL040C	UME6	P39001	836 aa		2.31	□□□□□ -2.04
CLN3	YAL040C	SCS2	P40075	244 aa	Known RBP	2.31	□□□□□ -2.04
CLN3	YAL040C	PRM2	P40534	656 aa		2.31	□□□□□ -2.04
CLN3	YAL040C	INA22	P40576	216 aa		2.31	□□□□□ -2.04
CLN3	YAL040C	YFL012W	P43580	148 aa		2.31	□□□□□ -2.04
CLN3	YAL040C	RRT5	P43607	289 aa		2.31	□□□□□ -2.04
CLN3	YAL040C	SAE2	P46946	345 aa		2.31	□□□□□ -2.04
CLN3	YAL040C	POL31	P46957	487 aa		2.31	□□□□□ -2.04
CLN3	YAL040C	AMA1	P50082	593 aa		2.31	□□□□□ -2.04
CLN3	YAL040C	IMA1	P53051	589 aa		2.31	□□□□□ -2.04
CLN3	YAL040C	HOP2	P53187	214 aa		2.31	□□□□□ -2.04
CLN3	YAL040C	BSC5	P53755	489 aa		2.31	□□□□□ -2.04
CLN3	YAL040C	YNL144C	P53907	740 aa		2.31	□□□□□ -2.04

Retrieved 100 of 5,963 RNA–protein pairs in 92.6 ms