RNA–Protein interactions for RNA: ENST00000611848.1

SMAD4-217, Transcript of SMAD family member 4, humanhuman

TSL 5

Gene SMAD4, Length 1,648 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMAD4-217ENST00000611848 DHX30Q7L2E3 1194 aaKnown RBP eCLIP10.22□□□□□ -0.77
SMAD4-217ENST00000611848 NBPF11Q86T75 865 aa10.22□□□□□ -0.77
SMAD4-217ENST00000611848 SLAIN1Q8ND83 568 aa10.22□□□□□ -0.77
SMAD4-217ENST00000611848 CTCFLQ8NI51 663 aaPredicted RBP10.22□□□□□ -0.77
SMAD4-217ENST00000611848 PXYLP1Q8TE99 480 aa10.22□□□□□ -0.77
SMAD4-217ENST00000611848 USP6NLQ92738 828 aa10.22□□□□□ -0.77
SMAD4-217ENST00000611848 ZSCAN31Q96LW9 406 aaPredicted RBP10.22□□□□□ -0.77
SMAD4-217ENST00000611848 TCEANC2Q96MN5 208 aa10.22□□□□□ -0.77
SMAD4-217ENST00000611848 UBA5Q9GZZ9 404 aa10.22□□□□□ -0.77
SMAD4-217ENST00000611848 PDRG1Q9NUG6 133 aa10.22□□□□□ -0.77
SMAD4-217ENST00000611848 HPS5Q9UPZ3 1129 aa10.22□□□□□ -0.77
SMAD4-217ENST00000611848 FCER1AP12319 257 aa10.22□□□□□ -0.77
SMAD4-217ENST00000611848 CPA1P15085 419 aa10.22□□□□□ -0.77
SMAD4-217ENST00000611848 RCAN1P53805 252 aa10.22□□□□□ -0.77
SMAD4-217ENST00000611848 SLC9C1Q4G0N8 1177 aa10.22□□□□□ -0.77
SMAD4-217ENST00000611848 CCDC174Q6PII3 467 aa10.22□□□□□ -0.77
SMAD4-217ENST00000611848 Q6ZUG5 572 aa10.22□□□□□ -0.77
SMAD4-217ENST00000611848 NOL8Q76FK4 1167 aaKnown RBP10.22□□□□□ -0.77
SMAD4-217ENST00000611848 TRMT44Q8IYL2 757 aaKnown RBP10.22□□□□□ -0.77
SMAD4-217ENST00000611848 ADGRF4Q8IZF3 695 aa10.22□□□□□ -0.77
SMAD4-217ENST00000611848 STAG2Q8N3U4 1231 aa10.22□□□□□ -0.77
SMAD4-217ENST00000611848 AGBL1Q96MI9 1066 aa10.22□□□□□ -0.77
SMAD4-217ENST00000611848 LZTS2Q9BRK4 669 aa10.22□□□□□ -0.77
SMAD4-217ENST00000611848 AGXT2Q9BYV1 514 aa10.22□□□□□ -0.77
SMAD4-217ENST00000611848 SLC5A4Q9NY91 659 aa10.22□□□□□ -0.77
SMAD4-217ENST00000611848 CCPG1Q9ULG6 757 aa10.22□□□□□ -0.77
SMAD4-217ENST00000611848 RIPK3Q9Y572 518 aa10.22□□□□□ -0.77
SMAD4-217ENST00000611848 ZNF236Q9UL36 1845 aa10.21□□□□□ -0.77
SMAD4-217ENST00000611848 DHX16O60231 1041 aaKnown RBP10.21□□□□□ -0.78
SMAD4-217ENST00000611848 ADCY3O60266 1144 aa10.21□□□□□ -0.78
SMAD4-217ENST00000611848 HOXC6P09630 235 aa10.21□□□□□ -0.78
SMAD4-217ENST00000611848 XRCC6P12956 609 aaKnown RBP eCLIP10.21□□□□□ -0.78
SMAD4-217ENST00000611848 ALAS1P13196 640 aa10.21□□□□□ -0.78
SMAD4-217ENST00000611848 CYP2B6P20813 491 aa10.21□□□□□ -0.78
SMAD4-217ENST00000611848 SMARCA1P28370 1054 aa10.21□□□□□ -0.78
SMAD4-217ENST00000611848 GRK4P32298 578 aa10.21□□□□□ -0.78
SMAD4-217ENST00000611848 KCTD2Q14681 263 aa10.21□□□□□ -0.78
SMAD4-217ENST00000611848 PPP2R5BQ15173 497 aa10.21□□□□□ -0.78
SMAD4-217ENST00000611848 APOA5Q6Q788 366 aa10.21□□□□□ -0.78
SMAD4-217ENST00000611848 DPP9Q86TI2 863 aa10.21□□□□□ -0.78
SMAD4-217ENST00000611848 FANCBQ8NB91 859 aa10.21□□□□□ -0.78
SMAD4-217ENST00000611848 ARMC5Q96C12 935 aa10.21□□□□□ -0.78
SMAD4-217ENST00000611848 ABHD8Q96I13 439 aa10.21□□□□□ -0.78
SMAD4-217ENST00000611848 TRERF1Q96PN7 1200 aa10.21□□□□□ -0.78
SMAD4-217ENST00000611848 MMP19Q99542 508 aa10.21□□□□□ -0.78
SMAD4-217ENST00000611848 APBA2Q99767 749 aa10.21□□□□□ -0.78
SMAD4-217ENST00000611848 MYL10Q9BUA6 226 aa10.21□□□□□ -0.78
SMAD4-217ENST00000611848 CPVLQ9H3G5 476 aa10.21□□□□□ -0.78
SMAD4-217ENST00000611848 RIOX1Q9H6W3 641 aa10.21□□□□□ -0.78
SMAD4-217ENST00000611848 ACAD9Q9H845 621 aa10.21□□□□□ -0.78
SMAD4-217ENST00000611848 JMJD4Q9H9V9 463 aa10.21□□□□□ -0.78
SMAD4-217ENST00000611848 SH2B1Q9NRF2 756 aaPredicted RBP10.21□□□□□ -0.78
SMAD4-217ENST00000611848 BRPF3Q9ULD4 1205 aa10.21□□□□□ -0.78
SMAD4-217ENST00000611848 ZSCAN21Q9Y5A6 473 aaPredicted RBP10.21□□□□□ -0.78
SMAD4-217ENST00000611848 PLXNA1Q9UIW2 1896 aa10.2□□□□□ -0.78
SMAD4-217ENST00000611848 KLF18A0A0U1RQI7 1052 aa10.2□□□□□ -0.78
SMAD4-217ENST00000611848 ZBTB43O43298 467 aa10.2□□□□□ -0.78
SMAD4-217ENST00000611848 ADORA2AP29274 412 aa10.2□□□□□ -0.78
SMAD4-217ENST00000611848 MRE11P49959 708 aa10.2□□□□□ -0.78
SMAD4-217ENST00000611848 SNAP25P60880 206 aa10.2□□□□□ -0.78
SMAD4-217ENST00000611848 CDC37Q16543 378 aaPredicted RBP10.2□□□□□ -0.78
SMAD4-217ENST00000611848 MICU3Q86XE3 530 aa10.2□□□□□ -0.78
SMAD4-217ENST00000611848 MTMR8Q96EF0 704 aa10.2□□□□□ -0.78
SMAD4-217ENST00000611848 VAT1LQ9HCJ6 419 aa10.2□□□□□ -0.78
SMAD4-217ENST00000611848 RNF146Q9NTX7 359 aa10.2□□□□□ -0.78
SMAD4-217ENST00000611848 RBM28Q9NW13 759 aaKnown RBP10.2□□□□□ -0.78
SMAD4-217ENST00000611848 DDX49Q9Y6V7 483 aaKnown RBP10.2□□□□□ -0.78
SMAD4-217ENST00000611848 ZBTB5O15062 677 aa10.19□□□□□ -0.78
SMAD4-217ENST00000611848 UBXN2AP68543 259 aa10.19□□□□□ -0.78
SMAD4-217ENST00000611848 TRAF1Q13077 416 aa10.19□□□□□ -0.78
SMAD4-217ENST00000611848 QRICH1Q2TAL8 776 aa10.19□□□□□ -0.78
SMAD4-217ENST00000611848 ANKRD35Q8N283 1001 aa10.19□□□□□ -0.78
SMAD4-217ENST00000611848 BRF1Q92994 677 aa10.19□□□□□ -0.78
SMAD4-217ENST00000611848 DDX11Q96FC9 970 aa10.19□□□□□ -0.78
SMAD4-217ENST00000611848 SPZ1Q9BXG8 430 aa10.19□□□□□ -0.78
SMAD4-217ENST00000611848 HOMER2Q9NSB8 354 aa10.19□□□□□ -0.78
SMAD4-217ENST00000611848 BIN2Q9UBW5 565 aaPredicted RBP10.19□□□□□ -0.78
SMAD4-217ENST00000611848 DIS3Q9Y2L1 958 aaKnown RBP10.19□□□□□ -0.78
SMAD4-217ENST00000611848 ABCB11O95342 1321 aa10.19□□□□□ -0.78
SMAD4-217ENST00000611848 CCDC196A0A1B0GTZ2 297 aa10.18□□□□□ -0.78
SMAD4-217ENST00000611848 CYTH3O43739 400 aa10.18□□□□□ -0.78
SMAD4-217ENST00000611848 COBLO75128 1261 aa10.18□□□□□ -0.78
SMAD4-217ENST00000611848 PRPF40AO75400 957 aaKnown RBP10.18□□□□□ -0.78
SMAD4-217ENST00000611848 LARGE1O95461 756 aa10.18□□□□□ -0.78
SMAD4-217ENST00000611848 HMGCRP04035 888 aa10.18□□□□□ -0.78
SMAD4-217ENST00000611848 RXRAP19793 462 aa10.18□□□□□ -0.78
SMAD4-217ENST00000611848 EVCP57679 992 aa10.18□□□□□ -0.78
SMAD4-217ENST00000611848 APOBRQ0VD83 1088 aa10.18□□□□□ -0.78
SMAD4-217ENST00000611848 ANKRD1Q15327 319 aa10.18□□□□□ -0.78
SMAD4-217ENST00000611848 RTN1Q16799 776 aa10.18□□□□□ -0.78
SMAD4-217ENST00000611848 FBXO11Q86XK2 927 aa10.18□□□□□ -0.78
SMAD4-217ENST00000611848 CCDC144CPQ8IYA2 1237 aa10.18□□□□□ -0.78
SMAD4-217ENST00000611848 NPLOC4Q8TAT6 608 aa10.18□□□□□ -0.78
SMAD4-217ENST00000611848 SH3TC2Q8TF17 1288 aa10.18□□□□□ -0.78
SMAD4-217ENST00000611848 ZNF333Q96JL9 665 aa10.18□□□□□ -0.78
SMAD4-217ENST00000611848 AMNQ9BXJ7 453 aa10.18□□□□□ -0.78
SMAD4-217ENST00000611848 MAF1Q9H063 256 aa10.18□□□□□ -0.78
SMAD4-217ENST00000611848 PFASO15067 1338 aa10.18□□□□□ -0.78
SMAD4-217ENST00000611848 PNMA6FA0A0J9YX94 578 aa10.18□□□□□ -0.78
SMAD4-217ENST00000611848 GOLGA8AA7E2F4 631 aa10.18□□□□□ -0.78
Retrieved 100 of 20,778 RNA–protein pairs in 16.2 ms