RNA–Protein interactions for RNA: ENST00000487617.5

HDAC4-209, Transcript of histone deacetylase 4, humanhuman

TSL 3

Gene HDAC4, Length 819 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC4-209ENST00000487617 PTPDC1A2A3K4 754 aa23.87■■□□□ 1.41
HDAC4-209ENST00000487617 ATN1P54259 1190 aaPredicted RBP23.87■■□□□ 1.41
HDAC4-209ENST00000487617 BAATQ14032 418 aaPredicted RBP23.87■■□□□ 1.41
HDAC4-209ENST00000487617 SART3Q15020 963 aaKnown RBP23.87■■□□□ 1.41
HDAC4-209ENST00000487617 CDC37Q16543 378 aaPredicted RBP23.87■■□□□ 1.41
HDAC4-209ENST00000487617 CHST3Q7LGC8 479 aa23.87■■□□□ 1.41
HDAC4-209ENST00000487617 RNF180Q86T96 592 aa23.87■■□□□ 1.41
HDAC4-209ENST00000487617 ADGRF4Q8IZF3 695 aa23.87■■□□□ 1.41
HDAC4-209ENST00000487617 CLEC4DQ8WXI8 215 aa23.87■■□□□ 1.41
HDAC4-209ENST00000487617 ANO2Q9NQ90 1003 aa23.87■■□□□ 1.41
HDAC4-209ENST00000487617 CEP290O15078 2479 aa23.87■■□□□ 1.41
HDAC4-209ENST00000487617 DHX16O60231 1041 aaKnown RBP23.86■■□□□ 1.41
HDAC4-209ENST00000487617 USH1GQ495M9 461 aa23.86■■□□□ 1.41
HDAC4-209ENST00000487617 PURBQ96QR8 312 aaKnown RBP23.86■■□□□ 1.41
HDAC4-209ENST00000487617 VAT1LQ9HCJ6 419 aa23.86■■□□□ 1.41
HDAC4-209ENST00000487617 ALPK3Q96L96 1907 aa23.85■■□□□ 1.41
HDAC4-209ENST00000487617 ADCYAP1R1P41586 468 aa23.85■■□□□ 1.41
HDAC4-209ENST00000487617 WTAPQ15007 396 aa23.85■■□□□ 1.41
HDAC4-209ENST00000487617 CCDC144BQ3MJ40 725 aa23.85■■□□□ 1.41
HDAC4-209ENST00000487617 ASTN1O14525 1302 aa23.84■■□□□ 1.41
HDAC4-209ENST00000487617 SLC27A2O14975 620 aa23.84■■□□□ 1.41
HDAC4-209ENST00000487617 DUSP11O75319 330 aaKnown RBP23.84■■□□□ 1.41
HDAC4-209ENST00000487617 SYN1P17600 705 aa23.84■■□□□ 1.41
HDAC4-209ENST00000487617 CALML3P27482 149 aa23.84■■□□□ 1.41
HDAC4-209ENST00000487617 TMEM67Q5HYA8 995 aa23.84■■□□□ 1.41
HDAC4-209ENST00000487617 CASC1Q6TDU7 716 aa23.84■■□□□ 1.41
HDAC4-209ENST00000487617 RNF207Q6ZRF8 634 aa23.84■■□□□ 1.41
HDAC4-209ENST00000487617 MB21D2Q8IYB1 491 aaPredicted RBP23.84■■□□□ 1.41
HDAC4-209ENST00000487617 STAG2Q8N3U4 1231 aa23.84■■□□□ 1.41
HDAC4-209ENST00000487617 FERMT2Q96AC1 680 aa23.84■■□□□ 1.41
HDAC4-209ENST00000487617 KATNBL1Q9H079 304 aa23.84■■□□□ 1.41
HDAC4-209ENST00000487617 SENP2Q9HC62 589 aa23.84■■□□□ 1.41
HDAC4-209ENST00000487617 ADD3Q9UEY8 706 aaKnown RBP23.84■■□□□ 1.41
HDAC4-209ENST00000487617 DDX49Q9Y6V7 483 aaKnown RBP23.84■■□□□ 1.41
HDAC4-209ENST00000487617 SYNRGQ9UMZ2 1314 aa23.84■■□□□ 1.41
HDAC4-209ENST00000487617 ADAMTS4O75173 837 aa23.83■■□□□ 1.41
HDAC4-209ENST00000487617 ANTXR2P58335 489 aa23.83■■□□□ 1.41
HDAC4-209ENST00000487617 SLC30A10Q6XR72 485 aa23.83■■□□□ 1.41
HDAC4-209ENST00000487617 JMJD4Q9H9V9 463 aa23.83■■□□□ 1.41
HDAC4-209ENST00000487617 RBM27Q9P2N5 1060 aaKnown RBP23.83■■□□□ 1.41
HDAC4-209ENST00000487617 PHF24Q9UPV7 400 aa23.83■■□□□ 1.41
HDAC4-209ENST00000487617 SMCHD1A6NHR9 2005 aa23.83■■□□□ 1.4
HDAC4-209ENST00000487617 KLRF2D3W0D1 207 aa23.82■■□□□ 1.4
HDAC4-209ENST00000487617 CDC45O75419 566 aa23.82■■□□□ 1.4
HDAC4-209ENST00000487617 RTP1P59025 263 aa23.82■■□□□ 1.4
HDAC4-209ENST00000487617 NECTIN1Q15223 517 aa23.82■■□□□ 1.4
HDAC4-209ENST00000487617 QRICH1Q2TAL8 776 aa23.82■■□□□ 1.4
HDAC4-209ENST00000487617 CREB3L3Q68CJ9 461 aa23.82■■□□□ 1.4
HDAC4-209ENST00000487617 SLC39A5Q6ZMH5 540 aa23.82■■□□□ 1.4
HDAC4-209ENST00000487617 MAD2L2Q9UI95 211 aa23.82■■□□□ 1.4
HDAC4-209ENST00000487617 ABCB11O95342 1321 aa23.82■■□□□ 1.4
HDAC4-209ENST00000487617 PALM3A6NDB9 673 aaPredicted RBP23.81■■□□□ 1.4
HDAC4-209ENST00000487617 ADCY6O43306 1168 aa23.81■■□□□ 1.4
HDAC4-209ENST00000487617 ALDH5A1P51649 535 aaPredicted RBP23.81■■□□□ 1.4
HDAC4-209ENST00000487617 RPS6P62753 249 aaKnown RBP23.81■■□□□ 1.4
HDAC4-209ENST00000487617 GRM4Q14833 912 aa23.81■■□□□ 1.4
HDAC4-209ENST00000487617 NOL8Q76FK4 1167 aaKnown RBP23.81■■□□□ 1.4
HDAC4-209ENST00000487617 EEPD1Q7L9B9 569 aa23.81■■□□□ 1.4
HDAC4-209ENST00000487617 FBXO11Q86XK2 927 aa23.81■■□□□ 1.4
HDAC4-209ENST00000487617 IGDCC4Q8TDY8 1250 aa23.81■■□□□ 1.4
HDAC4-209ENST00000487617 SPC25Q9HBM1 224 aa23.81■■□□□ 1.4
HDAC4-209ENST00000487617 ATP11BQ9Y2G3 1177 aa23.81■■□□□ 1.4
HDAC4-209ENST00000487617 TNFAIP2Q03169 654 aa23.8■■□□□ 1.4
HDAC4-209ENST00000487617 CATIPQ7Z7H3 387 aa23.8■■□□□ 1.4
HDAC4-209ENST00000487617 FBXO16Q8IX29 292 aaPredicted RBP23.8■■□□□ 1.4
HDAC4-209ENST00000487617 KLHDC9Q8NEP7 349 aa23.8■■□□□ 1.4
HDAC4-209ENST00000487617 MORC4Q8TE76 937 aa23.8■■□□□ 1.4
HDAC4-209ENST00000487617 TSEN34Q9BSV6 310 aaKnown RBP23.8■■□□□ 1.4
HDAC4-209ENST00000487617 PRO3102Q9H379 93 aa23.8■■□□□ 1.4
HDAC4-209ENST00000487617 C11orf97A0A1B0GVM6 126 aaPredicted RBP23.79■■□□□ 1.4
HDAC4-209ENST00000487617 MYADML2A6NDP7 307 aa23.79■■□□□ 1.4
HDAC4-209ENST00000487617 PRC1O43663 620 aa23.79■■□□□ 1.4
HDAC4-209ENST00000487617 C6orf222P0C671 652 aaPredicted RBP23.79■■□□□ 1.4
HDAC4-209ENST00000487617 MCM5P33992 734 aa23.79■■□□□ 1.4
HDAC4-209ENST00000487617 RGS22Q8NE09 1264 aa23.79■■□□□ 1.4
HDAC4-209ENST00000487617 VTA1Q9NP79 307 aa23.79■■□□□ 1.4
HDAC4-209ENST00000487617 MRPL11Q9Y3B7 192 aaKnown RBP23.79■■□□□ 1.4
HDAC4-209ENST00000487617 MCM3APO60318 1980 aa23.78■■□□□ 1.4
HDAC4-209ENST00000487617 LOC102724159A0A0B4J2E5 919 aa23.78■■□□□ 1.4
HDAC4-209ENST00000487617 A0A1W2PQ45 241 aaPredicted RBP23.78■■□□□ 1.4
HDAC4-209ENST00000487617 A0A1W2PQY0 241 aa23.78■■□□□ 1.4
HDAC4-209ENST00000487617 GJA9P57773 515 aa23.78■■□□□ 1.4
HDAC4-209ENST00000487617 TROAPQ12815 778 aa23.78■■□□□ 1.4
HDAC4-209ENST00000487617 PWP2Q15269 919 aaKnown RBP23.78■■□□□ 1.4
HDAC4-209ENST00000487617 KCNA10Q16322 511 aa23.78■■□□□ 1.4
HDAC4-209ENST00000487617 TRIM60Q495X7 471 aa23.78■■□□□ 1.4
HDAC4-209ENST00000487617 RNF20Q5VTR2 975 aa23.78■■□□□ 1.4
HDAC4-209ENST00000487617 MTA3Q9BTC8 594 aa23.78■■□□□ 1.4
HDAC4-209ENST00000487617 UPF3AQ9H1J1 476 aaKnown RBP23.78■■□□□ 1.4
HDAC4-209ENST00000487617 LY9Q9HBG7 655 aa23.78■■□□□ 1.4
HDAC4-209ENST00000487617 PDGFCQ9NRA1 345 aa23.78■■□□□ 1.4
HDAC4-209ENST00000487617 MOXD2PA6NHM9 499 aa23.77■■□□□ 1.4
HDAC4-209ENST00000487617 ACLYP53396 1101 aa23.77■■□□□ 1.4
HDAC4-209ENST00000487617 IRX5P78411 483 aaPredicted RBP23.77■■□□□ 1.4
HDAC4-209ENST00000487617 SNX17Q15036 470 aa23.77■■□□□ 1.4
HDAC4-209ENST00000487617 IQSEC1Q6DN90 963 aa23.77■■□□□ 1.4
HDAC4-209ENST00000487617 TAPT1Q6NXT6 567 aa23.77■■□□□ 1.4
HDAC4-209ENST00000487617 MCF2L2Q86YR7 1114 aa23.77■■□□□ 1.4
HDAC4-209ENST00000487617 DNERQ8NFT8 737 aa23.77■■□□□ 1.4
HDAC4-209ENST00000487617 NUP133Q8WUM0 1156 aa23.77■■□□□ 1.4
Retrieved 100 of 20,778 RNA–protein pairs in 249.2 ms