RNA–Protein interactions for RNA: ENST00000621676.4

VPS11-208, Transcript of VPS11, CORVET/HOPS core subunit, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS11, Length 3,313 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS11-208ENST00000621676 UBA7P41226 1012 aa11.98□□□□□ -0.49
VPS11-208ENST00000621676 NPY5RQ15761 445 aa11.98□□□□□ -0.49
VPS11-208ENST00000621676 KIF4BQ2VIQ3 1234 aa11.98□□□□□ -0.49
VPS11-208ENST00000621676 PRR16Q569H4 304 aa11.98□□□□□ -0.49
VPS11-208ENST00000621676 FMR1NBQ8N0W7 255 aaPredicted RBP11.98□□□□□ -0.49
VPS11-208ENST00000621676 REXO1Q8N1G1 1221 aaKnown RBP11.98□□□□□ -0.49
VPS11-208ENST00000621676 MAP3K14Q99558 947 aa11.98□□□□□ -0.49
VPS11-208ENST00000621676 PTGER2P43116 358 aa11.98□□□□□ -0.49
VPS11-208ENST00000621676 HMGCS2P54868 508 aa11.98□□□□□ -0.49
VPS11-208ENST00000621676 MTMR2Q13614 643 aa11.98□□□□□ -0.49
VPS11-208ENST00000621676 GRM4Q14833 912 aa11.98□□□□□ -0.49
VPS11-208ENST00000621676 RILPL1Q5EBL4 403 aa11.98□□□□□ -0.49
VPS11-208ENST00000621676 DDX19AQ9NUU7 478 aaKnown RBP11.98□□□□□ -0.49
VPS11-208ENST00000621676 FAM13BQ9NYF5 915 aa11.98□□□□□ -0.49
VPS11-208ENST00000621676 PALM3A6NDB9 673 aaPredicted RBP11.98□□□□□ -0.49
VPS11-208ENST00000621676 FLOT1O75955 427 aa11.98□□□□□ -0.49
VPS11-208ENST00000621676 YBX3P16989 372 aaKnown RBP eCLIP11.98□□□□□ -0.49
VPS11-208ENST00000621676 U2AF2P26368 475 aaKnown RBP eCLIP11.98□□□□□ -0.49
VPS11-208ENST00000621676 GABPAQ06546 454 aa11.98□□□□□ -0.49
VPS11-208ENST00000621676 IL17AQ16552 155 aa11.98□□□□□ -0.49
VPS11-208ENST00000621676 JMYQ8N9B5 988 aa11.98□□□□□ -0.49
VPS11-208ENST00000621676 FAM163AQ96GL9 167 aaPredicted RBP11.98□□□□□ -0.49
VPS11-208ENST00000621676 WNK4Q96J92 1243 aa11.98□□□□□ -0.49
VPS11-208ENST00000621676 RAVER2Q9HCJ3 691 aaKnown RBP11.98□□□□□ -0.49
VPS11-208ENST00000621676 POLR3EQ9NVU0 708 aa11.98□□□□□ -0.49
VPS11-208ENST00000621676 SERPINA10Q9UK55 444 aa11.98□□□□□ -0.49
VPS11-208ENST00000621676 STXBP3O00186 592 aa11.97□□□□□ -0.49
VPS11-208ENST00000621676 SLC37A4O43826 429 aa11.97□□□□□ -0.49
VPS11-208ENST00000621676 VIL1P09327 827 aaKnown RBP11.97□□□□□ -0.49
VPS11-208ENST00000621676 PTGS1P23219 599 aa11.97□□□□□ -0.49
VPS11-208ENST00000621676 CALML3P27482 149 aa11.97□□□□□ -0.49
VPS11-208ENST00000621676 ZNF543Q08ER8 600 aa11.97□□□□□ -0.49
VPS11-208ENST00000621676 C15orf52Q6ZUT6 534 aaKnown RBP11.97□□□□□ -0.49
VPS11-208ENST00000621676 FAM177A1Q8N128 213 aaPredicted RBP11.97□□□□□ -0.49
VPS11-208ENST00000621676 NUDT12Q9BQG2 462 aa11.97□□□□□ -0.49
VPS11-208ENST00000621676 KANSL2Q9H9L4 492 aa11.97□□□□□ -0.49
VPS11-208ENST00000621676 TRMT1Q9NXH9 659 aaKnown RBP11.97□□□□□ -0.49
VPS11-208ENST00000621676 SCN9AQ15858 1988 aa11.96□□□□□ -0.49
VPS11-208ENST00000621676 MSNP26038 577 aaKnown RBP11.96□□□□□ -0.49
VPS11-208ENST00000621676 C9orf131Q5VYM1 1079 aa11.96□□□□□ -0.49
VPS11-208ENST00000621676 BCAS3Q9H6U6 928 aa11.96□□□□□ -0.49
VPS11-208ENST00000621676 C6orf50Q9HD87 102 aa11.96□□□□□ -0.49
VPS11-208ENST00000621676 UTP3Q9NQZ2 479 aaKnown RBP eCLIP11.96□□□□□ -0.492e-6■■■■■ 92.6
VPS11-208ENST00000621676 PCDHA4Q9UN74 947 aa11.96□□□□□ -0.49
VPS11-208ENST00000621676 MYCLP12524 364 aaPredicted RBP11.96□□□□□ -0.49
VPS11-208ENST00000621676 BMP3P12645 472 aa11.96□□□□□ -0.49
VPS11-208ENST00000621676 CCDC178Q5BJE1 867 aa11.96□□□□□ -0.49
VPS11-208ENST00000621676 CCDC186Q7Z3E2 898 aa11.96□□□□□ -0.49
VPS11-208ENST00000621676 METTL16Q86W50 562 aaKnown RBP11.96□□□□□ -0.49
VPS11-208ENST00000621676 PAGR1Q9BTK6 254 aa11.96□□□□□ -0.49
VPS11-208ENST00000621676 KIAA1468Q9P260 1216 aa11.96□□□□□ -0.49
VPS11-208ENST00000621676 SFI1A8K8P3 1242 aa11.96□□□□□ -0.5
VPS11-208ENST00000621676 SERPINC1P01008 464 aa11.96□□□□□ -0.5
VPS11-208ENST00000621676 HIRAP54198 1017 aaPredicted RBP11.96□□□□□ -0.5
VPS11-208ENST00000621676 LRRC41Q15345 812 aa11.96□□□□□ -0.5
VPS11-208ENST00000621676 TPD52L1Q16890 204 aaPredicted RBP11.96□□□□□ -0.5
VPS11-208ENST00000621676 SLC16A10Q8TF71 515 aa11.96□□□□□ -0.5
VPS11-208ENST00000621676 ZNF592Q92610 1267 aa11.96□□□□□ -0.5
VPS11-208ENST00000621676 BARHL2Q9NY43 387 aa11.96□□□□□ -0.5
VPS11-208ENST00000621676 FBXO2Q9UK22 296 aaPredicted RBP11.96□□□□□ -0.5
VPS11-208ENST00000621676 ZBTB39O15060 712 aa11.95□□□□□ -0.5
VPS11-208ENST00000621676 ADCY7P51828 1080 aa11.95□□□□□ -0.5
VPS11-208ENST00000621676 CUL4BQ13620 913 aa11.95□□□□□ -0.5
VPS11-208ENST00000621676 DTHD1Q6ZMT9 781 aa11.95□□□□□ -0.5
VPS11-208ENST00000621676 CEP57L1Q8IYX8 460 aa11.95□□□□□ -0.5
VPS11-208ENST00000621676 ENGASEQ8NFI3 743 aa11.95□□□□□ -0.5
VPS11-208ENST00000621676 FOXP1Q9H334 677 aaPredicted RBP11.95□□□□□ -0.5
VPS11-208ENST00000621676 LAMB2P55268 1798 aa11.95□□□□□ -0.5
VPS11-208ENST00000621676 MAP1SQ66K74 1059 aaPredicted RBP11.95□□□□□ -0.5
VPS11-208ENST00000621676 PPP1R13LQ8WUF5 828 aa11.95□□□□□ -0.5
VPS11-208ENST00000621676 NAP1L5Q96NT1 182 aaPredicted RBP11.95□□□□□ -0.5
VPS11-208ENST00000621676 GDAQ9Y2T3 454 aa11.95□□□□□ -0.5
VPS11-208ENST00000621676 LAMA4Q16363 1823 aa11.95□□□□□ -0.5
VPS11-208ENST00000621676 YEATS4O95619 227 aa11.94□□□□□ -0.5
VPS11-208ENST00000621676 STAT6P42226 847 aa11.94□□□□□ -0.5
VPS11-208ENST00000621676 NONOQ15233 471 aaKnown RBP eCLIP11.94□□□□□ -0.5
VPS11-208ENST00000621676 IFNKQ9P0W0 207 aa11.94□□□□□ -0.5
VPS11-208ENST00000621676 SMCHD1A6NHR9 2005 aa11.94□□□□□ -0.5
VPS11-208ENST00000621676 FGRP09769 529 aa11.94□□□□□ -0.5
VPS11-208ENST00000621676 CMA1P23946 247 aa11.94□□□□□ -0.5
VPS11-208ENST00000621676 CCT6AP40227 531 aaKnown RBP11.94□□□□□ -0.5
VPS11-208ENST00000621676 GNAQP50148 359 aa11.94□□□□□ -0.5
VPS11-208ENST00000621676 TMEM87AQ8NBN3 555 aa11.94□□□□□ -0.5
VPS11-208ENST00000621676 FAM200AQ8TCP9 573 aa11.94□□□□□ -0.5
VPS11-208ENST00000621676 FANCLQ9NW38 375 aa11.94□□□□□ -0.5
VPS11-208ENST00000621676 SAMM50Q9Y512 469 aa11.94□□□□□ -0.5
VPS11-208ENST00000621676 SNED1Q8TER0 1413 aa11.94□□□□□ -0.5
VPS11-208ENST00000621676 COL4A5P29400 1685 aa11.94□□□□□ -0.5
VPS11-208ENST00000621676 TGFB2P61812 414 aa11.94□□□□□ -0.5
VPS11-208ENST00000621676 OTUD5Q96G74 571 aa11.94□□□□□ -0.5
VPS11-208ENST00000621676 CDK5RAP3Q96JB5 506 aa11.94□□□□□ -0.5
VPS11-208ENST00000621676 CLMNQ96JQ2 1002 aa11.94□□□□□ -0.5
VPS11-208ENST00000621676 P2RX7Q99572 595 aaKnown RBP11.94□□□□□ -0.5
VPS11-208ENST00000621676 DHX36Q9H2U1 1008 aaKnown RBP11.94□□□□□ -0.5
VPS11-208ENST00000621676 PRR12Q9ULL5 1215 aa11.94□□□□□ -0.5
VPS11-208ENST00000621676 LY75O60449 1722 aa11.94□□□□□ -0.5
VPS11-208ENST00000621676 NPHP3-ACAD11A0A0J9YXS1 232 aa11.93□□□□□ -0.5
VPS11-208ENST00000621676 ESPNB1AK53 854 aa11.93□□□□□ -0.5
VPS11-208ENST00000621676 TRAF5O00463 557 aa11.93□□□□□ -0.5
VPS11-208ENST00000621676 EIF2AK2P19525 551 aaKnown RBP11.93□□□□□ -0.5
Retrieved 100 of 20,778 RNA–protein pairs in 33.1 ms