RNA–Protein interactions for RNA: ENST00000601689.1

UPF1-212, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 4

Gene UPF1, Length 561 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-212ENST00000601689 OLFML2BQ68BL8 750 aa22.61■■□□□ 1.21
UPF1-212ENST00000601689 TTBK2Q6IQ55 1244 aa22.61■■□□□ 1.21
UPF1-212ENST00000601689 CATIPQ7Z7H3 387 aa22.61■■□□□ 1.21
UPF1-212ENST00000601689 TMEM87BQ96K49 555 aa22.61■■□□□ 1.21
UPF1-212ENST00000601689 XRN2Q9H0D6 950 aaKnown RBP eCLIP22.61■■□□□ 1.211e-5■■■□□ 18
UPF1-212ENST00000601689 ICAM1P05362 532 aa22.6■■□□□ 1.21
UPF1-212ENST00000601689 EN2P19622 333 aaPredicted RBP22.6■■□□□ 1.21
UPF1-212ENST00000601689 NPLOC4Q8TAT6 608 aa22.6■■□□□ 1.21
UPF1-212ENST00000601689 TRERF1Q96PN7 1200 aa22.6■■□□□ 1.21
UPF1-212ENST00000601689 RANBP17Q9H2T7 1088 aaKnown RBP22.6■■□□□ 1.21
UPF1-212ENST00000601689 HOMER2Q9NSB8 354 aa22.6■■□□□ 1.21
UPF1-212ENST00000601689 MSCO60682 206 aa22.59■■□□□ 1.21
UPF1-212ENST00000601689 SGPL1O95470 568 aa22.59■■□□□ 1.21
UPF1-212ENST00000601689 SEC23AQ15436 765 aa22.59■■□□□ 1.21
UPF1-212ENST00000601689 CCL14Q16627 93 aa22.59■■□□□ 1.21
UPF1-212ENST00000601689 NFXL1Q6ZNB6 911 aa22.59■■□□□ 1.21
UPF1-212ENST00000601689 U2AF1L4Q8WU68 220 aaKnown RBP22.59■■□□□ 1.21
UPF1-212ENST00000601689 DEFB118Q96PH6 123 aa22.59■■□□□ 1.21
UPF1-212ENST00000601689 RNF146Q9NTX7 359 aa22.59■■□□□ 1.21
UPF1-212ENST00000601689 RIPK3Q9Y572 518 aa22.59■■□□□ 1.21
UPF1-212ENST00000601689 PLXNA1Q9UIW2 1896 aa22.59■■□□□ 1.21
UPF1-212ENST00000601689 CCDC69A6NI79 296 aa22.58■■□□□ 1.21
UPF1-212ENST00000601689 PRC1O43663 620 aa22.58■■□□□ 1.21
UPF1-212ENST00000601689 COBLO75128 1261 aa22.58■■□□□ 1.21
UPF1-212ENST00000601689 HMGB1P09429 215 aaKnown RBP22.58■■□□□ 1.21
UPF1-212ENST00000601689 GOLGA8HP0CJ92 632 aa22.58■■□□□ 1.21
UPF1-212ENST00000601689 CNGA1P29973 690 aa22.58■■□□□ 1.21
UPF1-212ENST00000601689 CACNB2Q08289 660 aaPredicted RBP22.58■■□□□ 1.21
UPF1-212ENST00000601689 STOX1Q6ZVD7 989 aa22.58■■□□□ 1.21
UPF1-212ENST00000601689 CHST3Q7LGC8 479 aa22.58■■□□□ 1.21
UPF1-212ENST00000601689 MB21D2Q8IYB1 491 aaPredicted RBP22.58■■□□□ 1.21
UPF1-212ENST00000601689 AGBL1Q96MI9 1066 aa22.58■■□□□ 1.21
UPF1-212ENST00000601689 NEK1Q96PY6 1258 aa22.58■■□□□ 1.21
UPF1-212ENST00000601689 PAK6Q9NQU5 681 aaPredicted RBP22.58■■□□□ 1.21
UPF1-212ENST00000601689 PFASO15067 1338 aa22.57■■□□□ 1.2
UPF1-212ENST00000601689 EPB41L2O43491 1005 aaKnown RBP22.57■■□□□ 1.2
UPF1-212ENST00000601689 TRAF1Q13077 416 aa22.57■■□□□ 1.2
UPF1-212ENST00000601689 MAP3K21Q5TCX8 1036 aa22.57■■□□□ 1.2
UPF1-212ENST00000601689 SYNE3Q6ZMZ3 975 aa22.57■■□□□ 1.2
UPF1-212ENST00000601689 DHX30Q7L2E3 1194 aaKnown RBP eCLIP22.57■■□□□ 1.2
UPF1-212ENST00000601689 RASGRP2Q7LDG7 609 aa22.57■■□□□ 1.2
UPF1-212ENST00000601689 MSL3Q8N5Y2 521 aaKnown RBP22.57■■□□□ 1.2
UPF1-212ENST00000601689 MAML3Q96JK9 1138 aa22.57■■□□□ 1.2
UPF1-212ENST00000601689 MYH6P13533 1939 aa22.57■■□□□ 1.2
UPF1-212ENST00000601689 PGK2P07205 417 aa22.56■■□□□ 1.2
UPF1-212ENST00000601689 KIF5BP33176 963 aa22.56■■□□□ 1.2
UPF1-212ENST00000601689 SNAP25P60880 206 aa22.56■■□□□ 1.2
UPF1-212ENST00000601689 CTCFLQ8NI51 663 aaPredicted RBP22.56■■□□□ 1.2
UPF1-212ENST00000601689 UBA5Q9GZZ9 404 aa22.56■■□□□ 1.2
UPF1-212ENST00000601689 ZNF536O15090 1300 aa22.56■■□□□ 1.2
UPF1-212ENST00000601689 KLRF2D3W0D1 207 aa22.55■■□□□ 1.2
UPF1-212ENST00000601689 POTEB2H3BUK9 544 aa22.55■■□□□ 1.2
UPF1-212ENST00000601689 CALM1P0DP23 149 aa22.55■■□□□ 1.2
UPF1-212ENST00000601689 CALM2P0DP24 149 aa22.55■■□□□ 1.2
UPF1-212ENST00000601689 CALM3P0DP25 149 aa22.55■■□□□ 1.2
UPF1-212ENST00000601689 CYP2C19P33261 490 aa22.55■■□□□ 1.2
UPF1-212ENST00000601689 FGD1P98174 961 aa22.55■■□□□ 1.2
UPF1-212ENST00000601689 TRIM32Q13049 653 aa22.55■■□□□ 1.2
UPF1-212ENST00000601689 ZNF792Q3KQV3 632 aa22.55■■□□□ 1.2
UPF1-212ENST00000601689 TSGA10IPQ3SY00 556 aa22.55■■□□□ 1.2
UPF1-212ENST00000601689 IGDCC4Q8TDY8 1250 aa22.55■■□□□ 1.2
UPF1-212ENST00000601689 NUP133Q8WUM0 1156 aa22.55■■□□□ 1.2
UPF1-212ENST00000601689 NRBP1Q9UHY1 535 aa22.55■■□□□ 1.2
UPF1-212ENST00000601689 CNPY2Q9Y2B0 182 aa22.55■■□□□ 1.2
UPF1-212ENST00000601689 TAF6LQ9Y6J9 622 aa22.55■■□□□ 1.2
UPF1-212ENST00000601689 WDR19Q8NEZ3 1342 aa22.55■■□□□ 1.2
UPF1-212ENST00000601689 ZNF467Q7Z7K2 595 aaPredicted RBP22.54■■□□□ 1.2
UPF1-212ENST00000601689 ADGRF4Q8IZF3 695 aa22.54■■□□□ 1.2
UPF1-212ENST00000601689 MPHOSPH6Q99547 160 aaKnown RBP22.54■■□□□ 1.2
UPF1-212ENST00000601689 TINF2Q9BSI4 451 aa22.54■■□□□ 1.2
UPF1-212ENST00000601689 VAT1LQ9HCJ6 419 aa22.54■■□□□ 1.2
UPF1-212ENST00000601689 FLRT1Q9NZU1 646 aa22.54■■□□□ 1.2
UPF1-212ENST00000601689 DDAH1O94760 285 aa22.53■■□□□ 1.2
UPF1-212ENST00000601689 PSMA5P28066 241 aa22.53■■□□□ 1.2
UPF1-212ENST00000601689 LIFRP42702 1097 aa22.53■■□□□ 1.2
UPF1-212ENST00000601689 GNAQP50148 359 aa22.53■■□□□ 1.2
UPF1-212ENST00000601689 CDC37Q16543 378 aaPredicted RBP22.53■■□□□ 1.2
UPF1-212ENST00000601689 NSMFQ6X4W1 530 aa22.53■■□□□ 1.2
UPF1-212ENST00000601689 DHX32Q7L7V1 743 aaKnown RBP22.53■■□□□ 1.2
UPF1-212ENST00000601689 ANKLE1Q8NAG6 615 aa22.53■■□□□ 1.2
UPF1-212ENST00000601689 MAP3K14Q99558 947 aa22.53■■□□□ 1.2
UPF1-212ENST00000601689 SLC12A7Q9Y666 1083 aa22.53■■□□□ 1.2
UPF1-212ENST00000601689 GRM4Q14833 912 aa22.52■■□□□ 1.2
UPF1-212ENST00000601689 MAF1Q9H063 256 aa22.52■■□□□ 1.2
UPF1-212ENST00000601689 A1CFQ9NQ94 594 aaKnown RBP22.52■■□□□ 1.2
UPF1-212ENST00000601689 ADD3Q9UEY8 706 aaKnown RBP22.52■■□□□ 1.2
UPF1-212ENST00000601689 DNAJC25-GNG10A0A024R161 153 aa22.51■■□□□ 1.19
UPF1-212ENST00000601689 B4DLN1 442 aa22.51■■□□□ 1.19
UPF1-212ENST00000601689 CCND3P30281 292 aaPredicted RBP22.51■■□□□ 1.19
UPF1-212ENST00000601689 HSPA4P34932 840 aa22.51■■□□□ 1.19
UPF1-212ENST00000601689 MRPL12P52815 198 aaKnown RBP22.51■■□□□ 1.19
UPF1-212ENST00000601689 ANTXR2P58335 489 aa22.51■■□□□ 1.19
UPF1-212ENST00000601689 USH1GQ495M9 461 aa22.51■■□□□ 1.19
UPF1-212ENST00000601689 FBXO11Q86XK2 927 aa22.51■■□□□ 1.19
UPF1-212ENST00000601689 ZNF654Q8IZM8 581 aa22.51■■□□□ 1.19
UPF1-212ENST00000601689 LZTS2Q9BRK4 669 aa22.51■■□□□ 1.19
UPF1-212ENST00000601689 HTATIP2Q9BUP3 242 aa22.51■■□□□ 1.19
UPF1-212ENST00000601689 CRISPLD2Q9H0B8 497 aa22.51■■□□□ 1.19
UPF1-212ENST00000601689 LY9Q9HBG7 655 aa22.51■■□□□ 1.19
UPF1-212ENST00000601689 DDX20Q9UHI6 824 aaKnown RBP22.51■■□□□ 1.19
Retrieved 100 of 20,778 RNA–protein pairs in 17.9 ms