RNA–Protein interactions for RNA: ENST00000553011.5

PTCH1-226, Transcript of patched 1, humanhuman

TSL 1 (best)

Gene PTCH1, Length 1,037 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCH1-226ENST00000553011 CCDC85CA6NKD9 419 aa16.47■□□□□ 0.23
PTCH1-226ENST00000553011 STRNO43815 780 aa16.47■□□□□ 0.23
PTCH1-226ENST00000553011 HMGB1P09429 215 aaKnown RBP16.47■□□□□ 0.23
PTCH1-226ENST00000553011 CASTP20810 708 aaKnown RBP16.47■□□□□ 0.23
PTCH1-226ENST00000553011 ADORA2AP29274 412 aa16.47■□□□□ 0.23
PTCH1-226ENST00000553011 COPB2P35606 906 aa16.47■□□□□ 0.23
PTCH1-226ENST00000553011 RGS2P41220 211 aa16.47■□□□□ 0.23
PTCH1-226ENST00000553011 LIFRP42702 1097 aa16.47■□□□□ 0.23
PTCH1-226ENST00000553011 BLOC1S2Q6QNY1 142 aa16.47■□□□□ 0.23
PTCH1-226ENST00000553011 RAB11FIP4Q86YS3 637 aa16.47■□□□□ 0.23
PTCH1-226ENST00000553011 ADGRF4Q8IZF3 695 aa16.47■□□□□ 0.23
PTCH1-226ENST00000553011 TMTC2Q8N394 836 aa16.47■□□□□ 0.23
PTCH1-226ENST00000553011 SLAIN1Q8ND83 568 aa16.47■□□□□ 0.23
PTCH1-226ENST00000553011 ARMC5Q96C12 935 aa16.47■□□□□ 0.23
PTCH1-226ENST00000553011 HOMER2Q9NSB8 354 aa16.47■□□□□ 0.23
PTCH1-226ENST00000553011 CENPFP49454 3210 aa16.47■□□□□ 0.23
PTCH1-226ENST00000553011 KLRF2D3W0D1 207 aa16.46■□□□□ 0.23
PTCH1-226ENST00000553011 COBLO75128 1261 aa16.46■□□□□ 0.23
PTCH1-226ENST00000553011 DDAH1O94760 285 aa16.46■□□□□ 0.23
PTCH1-226ENST00000553011 MYCP01106 439 aaPredicted RBP16.46■□□□□ 0.23
PTCH1-226ENST00000553011 FCER1AP12319 257 aa16.46■□□□□ 0.23
PTCH1-226ENST00000553011 ALAS1P13196 640 aa16.46■□□□□ 0.23
PTCH1-226ENST00000553011 RXRAP19793 462 aa16.46■□□□□ 0.23
PTCH1-226ENST00000553011 CCL14Q16627 93 aa16.46■□□□□ 0.23
PTCH1-226ENST00000553011 SLC35G1Q2M3R5 365 aa16.46■□□□□ 0.23
PTCH1-226ENST00000553011 SGMS1Q86VZ5 419 aa16.46■□□□□ 0.23
PTCH1-226ENST00000553011 NPLOC4Q8TAT6 608 aa16.46■□□□□ 0.23
PTCH1-226ENST00000553011 PXYLP1Q8TE99 480 aa16.46■□□□□ 0.23
PTCH1-226ENST00000553011 ZNF333Q96JL9 665 aa16.46■□□□□ 0.23
PTCH1-226ENST00000553011 MMP19Q99542 508 aa16.46■□□□□ 0.23
PTCH1-226ENST00000553011 APBA2Q99767 749 aa16.46■□□□□ 0.23
PTCH1-226ENST00000553011 VAT1LQ9HCJ6 419 aa16.46■□□□□ 0.23
PTCH1-226ENST00000553011 CCPG1Q9ULG6 757 aa16.46■□□□□ 0.23
PTCH1-226ENST00000553011 LCTP09848 1927 aa16.46■□□□□ 0.23
PTCH1-226ENST00000553011 DHX16O60231 1041 aaKnown RBP16.45■□□□□ 0.22
PTCH1-226ENST00000553011 CAPN15O75808 1086 aa16.45■□□□□ 0.22
PTCH1-226ENST00000553011 ICAM1P05362 532 aa16.45■□□□□ 0.22
PTCH1-226ENST00000553011 XRCC5P13010 732 aaKnown RBP16.45■□□□□ 0.22
PTCH1-226ENST00000553011 RPS6KB1P23443 525 aa16.45■□□□□ 0.22
PTCH1-226ENST00000553011 PSMA5P28066 241 aa16.45■□□□□ 0.22
PTCH1-226ENST00000553011 CDC37Q16543 378 aaPredicted RBP16.45■□□□□ 0.22
PTCH1-226ENST00000553011 ABRAQ8N0Z2 381 aa16.45■□□□□ 0.22
PTCH1-226ENST00000553011 CHST13Q8NET6 341 aa16.45■□□□□ 0.22
PTCH1-226ENST00000553011 TRIB2Q92519 343 aa16.45■□□□□ 0.22
PTCH1-226ENST00000553011 JMJD4Q9H9V9 463 aa16.45■□□□□ 0.22
PTCH1-226ENST00000553011 RNF146Q9NTX7 359 aa16.45■□□□□ 0.22
PTCH1-226ENST00000553011 BIN2Q9UBW5 565 aaPredicted RBP16.45■□□□□ 0.22
PTCH1-226ENST00000553011 SLC12A7Q9Y666 1083 aa16.45■□□□□ 0.22
PTCH1-226ENST00000553011 INHAP05111 366 aa16.44■□□□□ 0.22
PTCH1-226ENST00000553011 PGK2P07205 417 aa16.44■□□□□ 0.22
PTCH1-226ENST00000553011 HOXC6P09630 235 aa16.44■□□□□ 0.22
PTCH1-226ENST00000553011 TRIM32Q13049 653 aa16.44■□□□□ 0.22
PTCH1-226ENST00000553011 KCTD2Q14681 263 aa16.44■□□□□ 0.22
PTCH1-226ENST00000553011 MUM1L1Q5H9M0 696 aa16.44■□□□□ 0.22
PTCH1-226ENST00000553011 Q6ZUG5 572 aa16.44■□□□□ 0.22
PTCH1-226ENST00000553011 NBPF11Q86T75 865 aa16.44■□□□□ 0.22
PTCH1-226ENST00000553011 DPP9Q86TI2 863 aa16.44■□□□□ 0.22
PTCH1-226ENST00000553011 CCDC144CPQ8IYA2 1237 aa16.44■□□□□ 0.22
PTCH1-226ENST00000553011 TRERF1Q96PN7 1200 aa16.44■□□□□ 0.22
PTCH1-226ENST00000553011 FLRT1Q9NZU1 646 aa16.44■□□□□ 0.22
PTCH1-226ENST00000553011 BRPF3Q9ULD4 1205 aa16.44■□□□□ 0.22
PTCH1-226ENST00000553011 RBBP6Q7Z6E9 1792 aaKnown RBP16.43■□□□□ 0.22
PTCH1-226ENST00000553011 EIF5BO60841 1220 aaKnown RBP16.43■□□□□ 0.22
PTCH1-226ENST00000553011 HMGCRP04035 888 aa16.43■□□□□ 0.22
PTCH1-226ENST00000553011 FGD1P98174 961 aa16.43■□□□□ 0.22
PTCH1-226ENST00000553011 MTFR1Q15390 333 aa16.43■□□□□ 0.22
PTCH1-226ENST00000553011 QRICH1Q2TAL8 776 aa16.43■□□□□ 0.22
PTCH1-226ENST00000553011 TKFCQ3LXA3 575 aa16.43■□□□□ 0.22
PTCH1-226ENST00000553011 APOA5Q6Q788 366 aa16.43■□□□□ 0.22
PTCH1-226ENST00000553011 DHX30Q7L2E3 1194 aaKnown RBP eCLIP16.43■□□□□ 0.22
PTCH1-226ENST00000553011 MICU3Q86XE3 530 aa16.43■□□□□ 0.22
PTCH1-226ENST00000553011 CTCFLQ8NI51 663 aaPredicted RBP16.43■□□□□ 0.22
PTCH1-226ENST00000553011 MAP3K14Q99558 947 aa16.43■□□□□ 0.22
PTCH1-226ENST00000553011 UPF3BQ9BZI7 483 aaKnown RBP16.43■□□□□ 0.22
PTCH1-226ENST00000553011 ACAD9Q9H845 621 aa16.43■□□□□ 0.22
PTCH1-226ENST00000553011 ZSWIM6Q9HCJ5 1215 aa16.43■□□□□ 0.22
PTCH1-226ENST00000553011 FBXO40Q9UH90 709 aa16.43■□□□□ 0.22
PTCH1-226ENST00000553011 KLF18A0A0U1RQI7 1052 aa16.42■□□□□ 0.22
PTCH1-226ENST00000553011 CYTH3O43739 400 aa16.42■□□□□ 0.22
PTCH1-226ENST00000553011 PLEKHA8P1O95397 391 aa16.42■□□□□ 0.22
PTCH1-226ENST00000553011 CALM1P0DP23 149 aa16.42■□□□□ 0.22
PTCH1-226ENST00000553011 CALM2P0DP24 149 aa16.42■□□□□ 0.22
PTCH1-226ENST00000553011 CALM3P0DP25 149 aa16.42■□□□□ 0.22
PTCH1-226ENST00000553011 APOBRQ0VD83 1088 aa16.42■□□□□ 0.22
PTCH1-226ENST00000553011 USH1GQ495M9 461 aa16.42■□□□□ 0.22
PTCH1-226ENST00000553011 RUFY3Q7L099 469 aa16.42■□□□□ 0.22
PTCH1-226ENST00000553011 ANKRD35Q8N283 1001 aa16.42■□□□□ 0.22
PTCH1-226ENST00000553011 BRF1Q92994 677 aa16.42■□□□□ 0.22
PTCH1-226ENST00000553011 MTMR8Q96EF0 704 aa16.42■□□□□ 0.22
PTCH1-226ENST00000553011 DDX11Q96FC9 970 aa16.42■□□□□ 0.22
PTCH1-226ENST00000553011 TM6SF1Q9BZW5 370 aa16.42■□□□□ 0.22
PTCH1-226ENST00000553011 RIOX1Q9H6W3 641 aa16.42■□□□□ 0.22
PTCH1-226ENST00000553011 CYP46A1Q9Y6A2 500 aa16.42■□□□□ 0.22
PTCH1-226ENST00000553011 KIF5BP33176 963 aa16.41■□□□□ 0.22
PTCH1-226ENST00000553011 SOX10P56693 466 aa16.41■□□□□ 0.22
PTCH1-226ENST00000553011 UBXN2AP68543 259 aa16.41■□□□□ 0.22
PTCH1-226ENST00000553011 SYNE3Q6ZMZ3 975 aa16.41■□□□□ 0.22
PTCH1-226ENST00000553011 HOMER1Q86YM7 354 aa16.41■□□□□ 0.22
PTCH1-226ENST00000553011 TRMT44Q8IYL2 757 aaKnown RBP16.41■□□□□ 0.22
PTCH1-226ENST00000553011 CMTR1Q8N1G2 835 aaKnown RBP16.41■□□□□ 0.22
Retrieved 100 of 20,778 RNA–protein pairs in 14.1 ms