RNA–Protein interactions for RNA: ENST00000473191.1

USP40-212, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 3

Gene USP40, Length 590 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-212ENST00000473191 MUM1L1Q5H9M0 696 aa19.72■□□□□ 0.75
USP40-212ENST00000473191 RCSD1Q6JBY9 416 aa19.72■□□□□ 0.75
USP40-212ENST00000473191 ANKRD35Q8N283 1001 aa19.72■□□□□ 0.75
USP40-212ENST00000473191 ARRDC4Q8NCT1 418 aa19.72■□□□□ 0.75
USP40-212ENST00000473191 TMEM47Q9BQJ4 181 aa19.72■□□□□ 0.75
USP40-212ENST00000473191 XPNPEP3Q9NQH7 507 aa19.72■□□□□ 0.75
USP40-212ENST00000473191 FRMPD2Q68DX3 1309 aaPredicted RBP19.72■□□□□ 0.75
USP40-212ENST00000473191 MYADML2A6NDP7 307 aa19.71■□□□□ 0.75
USP40-212ENST00000473191 KBTBD13C9JR72 458 aa19.71■□□□□ 0.75
USP40-212ENST00000473191 OAZ1P54368 228 aa19.71■□□□□ 0.75
USP40-212ENST00000473191 MAMDC4Q6UXC1 1216 aa19.71■□□□□ 0.75
USP40-212ENST00000473191 DHX30Q7L2E3 1194 aaKnown RBP eCLIP19.71■□□□□ 0.75
USP40-212ENST00000473191 FAM160B2Q86V87 743 aa19.71■□□□□ 0.75
USP40-212ENST00000473191 PURBQ96QR8 312 aaKnown RBP19.71■□□□□ 0.75
USP40-212ENST00000473191 ZKSCAN3Q9BRR0 538 aa19.71■□□□□ 0.75
USP40-212ENST00000473191 A1CFQ9NQ94 594 aaKnown RBP19.71■□□□□ 0.75
USP40-212ENST00000473191 ATP11BQ9Y2G3 1177 aa19.71■□□□□ 0.75
USP40-212ENST00000473191 ASTN1O14525 1302 aa19.71■□□□□ 0.75
USP40-212ENST00000473191 ZMYM6O95789 1325 aa19.71■□□□□ 0.75
USP40-212ENST00000473191 ADAMTS4O75173 837 aa19.7■□□□□ 0.74
USP40-212ENST00000473191 RARBP10826 455 aa19.7■□□□□ 0.74
USP40-212ENST00000473191 PTGS1P23219 599 aa19.7■□□□□ 0.74
USP40-212ENST00000473191 CCDC96Q2M329 555 aa19.7■□□□□ 0.74
USP40-212ENST00000473191 TRIM60Q495X7 471 aa19.7■□□□□ 0.74
USP40-212ENST00000473191 CHST13Q8NET6 341 aa19.7■□□□□ 0.74
USP40-212ENST00000473191 CHURC1Q8WUH1 139 aa19.7■□□□□ 0.74
USP40-212ENST00000473191 RNF146Q9NTX7 359 aa19.7■□□□□ 0.74
USP40-212ENST00000473191 CDKN2AIPQ9NXV6 580 aaPredicted RBP19.7■□□□□ 0.74
USP40-212ENST00000473191 NRBP1Q9UHY1 535 aa19.7■□□□□ 0.74
USP40-212ENST00000473191 ZHX1Q9UKY1 873 aaPredicted RBP19.7■□□□□ 0.74
USP40-212ENST00000473191 LTBP2Q14767 1821 aa19.69■□□□□ 0.74
USP40-212ENST00000473191 LCTP09848 1927 aa19.69■□□□□ 0.74
USP40-212ENST00000473191 A0A1W2PPC1 479 aa19.69■□□□□ 0.74
USP40-212ENST00000473191 SOWAHBA6NEL2 793 aa19.69■□□□□ 0.74
USP40-212ENST00000473191 PLA2G6O60733 806 aa19.69■□□□□ 0.74
USP40-212ENST00000473191 ALAS1P13196 640 aa19.69■□□□□ 0.74
USP40-212ENST00000473191 AKR1A1P14550 325 aa19.69■□□□□ 0.74
USP40-212ENST00000473191 GSPT1P15170 499 aaKnown RBP19.69■□□□□ 0.74
USP40-212ENST00000473191 AKNAD1Q5T1N1 836 aa19.69■□□□□ 0.74
USP40-212ENST00000473191 SH3RF1Q7Z6J0 888 aa19.69■□□□□ 0.74
USP40-212ENST00000473191 CCDC144CPQ8IYA2 1237 aa19.69■□□□□ 0.74
USP40-212ENST00000473191 TRERF1Q96PN7 1200 aa19.69■□□□□ 0.74
USP40-212ENST00000473191 UBE2OQ9C0C9 1292 aaKnown RBP19.69■□□□□ 0.74
USP40-212ENST00000473191 KATNBL1Q9H079 304 aa19.69■□□□□ 0.74
USP40-212ENST00000473191 GPCPD1Q9NPB8 672 aa19.69■□□□□ 0.74
USP40-212ENST00000473191 CNPY2Q9Y2B0 182 aa19.69■□□□□ 0.74
USP40-212ENST00000473191 SYNGAP1Q96PV0 1343 aa19.69■□□□□ 0.74
USP40-212ENST00000473191 LAMA4Q16363 1823 aa19.68■□□□□ 0.74
USP40-212ENST00000473191 SNX17Q15036 470 aa19.68■□□□□ 0.74
USP40-212ENST00000473191 MFSD6Q6ZSS7 791 aa19.68■□□□□ 0.74
USP40-212ENST00000473191 ARMCX2Q7L311 632 aa19.68■□□□□ 0.74
USP40-212ENST00000473191 ZNF467Q7Z7K2 595 aaPredicted RBP19.68■□□□□ 0.74
USP40-212ENST00000473191 TICAM2Q86XR7 235 aa19.68■□□□□ 0.74
USP40-212ENST00000473191 FAM133AQ8N9E0 248 aa19.68■□□□□ 0.74
USP40-212ENST00000473191 ACAD9Q9H845 621 aa19.68■□□□□ 0.74
USP40-212ENST00000473191 TCP11L1Q9NUJ3 509 aa19.68■□□□□ 0.74
USP40-212ENST00000473191 PHF24Q9UPV7 400 aa19.68■□□□□ 0.74
USP40-212ENST00000473191 SYNRGQ9UMZ2 1314 aa19.68■□□□□ 0.74
USP40-212ENST00000473191 C11orf97A0A1B0GVM6 126 aaPredicted RBP19.67■□□□□ 0.74
USP40-212ENST00000473191 PDHBP11177 359 aa19.67■□□□□ 0.74
USP40-212ENST00000473191 TOP1P11387 765 aaKnown RBP19.67■□□□□ 0.74
USP40-212ENST00000473191 ACVR2BQ13705 512 aa19.67■□□□□ 0.74
USP40-212ENST00000473191 TDHQ8IZJ6 230 aa19.67■□□□□ 0.74
USP40-212ENST00000473191 MSL3Q8N5Y2 521 aaKnown RBP19.67■□□□□ 0.74
USP40-212ENST00000473191 DCAF4Q8WV16 495 aa19.67■□□□□ 0.74
USP40-212ENST00000473191 RANBP17Q9H2T7 1088 aaKnown RBP19.67■□□□□ 0.74
USP40-212ENST00000473191 DIAPH3Q9NSV4 1193 aa19.67■□□□□ 0.74
USP40-212ENST00000473191 FBXO40Q9UH90 709 aa19.67■□□□□ 0.74
USP40-212ENST00000473191 LRRC37A2A6NM11 1700 aa19.66■□□□□ 0.74
USP40-212ENST00000473191 A0A1W2PQ45 241 aaPredicted RBP19.66■□□□□ 0.74
USP40-212ENST00000473191 A0A1W2PQY0 241 aa19.66■□□□□ 0.74
USP40-212ENST00000473191 TRIM43BA6NCK2 446 aa19.66■□□□□ 0.74
USP40-212ENST00000473191 FDX1P10109 184 aa19.66■□□□□ 0.74
USP40-212ENST00000473191 ITGB8P26012 769 aa19.66■□□□□ 0.74
USP40-212ENST00000473191 CCDC144BQ3MJ40 725 aa19.66■□□□□ 0.74
USP40-212ENST00000473191 PPP4R3BQ5MIZ7 849 aa19.66■□□□□ 0.74
USP40-212ENST00000473191 TMEM63BQ5T3F8 832 aa19.66■□□□□ 0.74
USP40-212ENST00000473191 CCSAPQ6IQ19 270 aaPredicted RBP19.66■□□□□ 0.74
USP40-212ENST00000473191 TRIM43Q96BQ3 446 aaPredicted RBP19.66■□□□□ 0.74
USP40-212ENST00000473191 CPVLQ9H3G5 476 aa19.66■□□□□ 0.74
USP40-212ENST00000473191 PRDM5Q9NQX1 630 aaPredicted RBP19.66■□□□□ 0.74
USP40-212ENST00000473191 FAM184BQ9ULE4 1060 aa19.66■□□□□ 0.74
USP40-212ENST00000473191 POTEB2H3BUK9 544 aa19.65■□□□□ 0.74
USP40-212ENST00000473191 ZNF213O14771 459 aa19.65■□□□□ 0.74
USP40-212ENST00000473191 SYDE2Q5VT97 1194 aa19.65■□□□□ 0.74
USP40-212ENST00000473191 BTNL9Q6UXG8 535 aa19.65■□□□□ 0.74
USP40-212ENST00000473191 RNF180Q86T96 592 aa19.65■□□□□ 0.74
USP40-212ENST00000473191 KLHDC9Q8NEP7 349 aa19.65■□□□□ 0.74
USP40-212ENST00000473191 PDLIM7Q9NR12 457 aa19.65■□□□□ 0.74
USP40-212ENST00000473191 CCPG1Q9ULG6 757 aa19.65■□□□□ 0.74
USP40-212ENST00000473191 B4E1Z4 1266 aa19.64■□□□□ 0.73
USP40-212ENST00000473191 NFIBO00712 420 aa19.64■□□□□ 0.73
USP40-212ENST00000473191 GOLGA8HP0CJ92 632 aa19.64■□□□□ 0.73
USP40-212ENST00000473191 TLE2Q04725 743 aa19.64■□□□□ 0.73
USP40-212ENST00000473191 KCNA10Q16322 511 aa19.64■□□□□ 0.73
USP40-212ENST00000473191 CYP39A1Q9NYL5 469 aa19.64■□□□□ 0.73
USP40-212ENST00000473191 CTAGE5O15320 804 aa19.63■□□□□ 0.73
USP40-212ENST00000473191 KDM4AO75164 1064 aa19.63■□□□□ 0.73
USP40-212ENST00000473191 ICAM1P05362 532 aa19.63■□□□□ 0.73
USP40-212ENST00000473191 SNHG28P0DPA3 235 aa19.63■□□□□ 0.73
Retrieved 100 of 20,778 RNA–protein pairs in 17.5 ms