RNA–Protein interactions for RNA: ENST00000332345.10

LIMS1-201, Transcript of LIM zinc finger domain containing 1, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene LIMS1, Length 1,235 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS1-201ENST00000332345 MFSD14CQ5VZR4 134 aa16.37■□□□□ 0.21
LIMS1-201ENST00000332345 CCDC174Q6PII3 467 aa16.37■□□□□ 0.21
LIMS1-201ENST00000332345 CATIPQ7Z7H3 387 aa16.37■□□□□ 0.21
LIMS1-201ENST00000332345 TRIB2Q92519 343 aa16.37■□□□□ 0.21
LIMS1-201ENST00000332345 DDX11Q96FC9 970 aa16.37■□□□□ 0.21
LIMS1-201ENST00000332345 AGBL1Q96MI9 1066 aa16.37■□□□□ 0.21
LIMS1-201ENST00000332345 NEK1Q96PY6 1258 aa16.37■□□□□ 0.21
LIMS1-201ENST00000332345 RANBP17Q9H2T7 1088 aaKnown RBP16.37■□□□□ 0.21
LIMS1-201ENST00000332345 EIF5BO60841 1220 aaKnown RBP16.36■□□□□ 0.21
LIMS1-201ENST00000332345 COBLO75128 1261 aa16.36■□□□□ 0.21
LIMS1-201ENST00000332345 ICAM1P05362 532 aa16.36■□□□□ 0.21
LIMS1-201ENST00000332345 HMGB1P09429 215 aaKnown RBP16.36■□□□□ 0.21
LIMS1-201ENST00000332345 CAPN2P17655 700 aa16.36■□□□□ 0.21
LIMS1-201ENST00000332345 SNAP25P60880 206 aa16.36■□□□□ 0.21
LIMS1-201ENST00000332345 CCL14Q16627 93 aa16.36■□□□□ 0.21
LIMS1-201ENST00000332345 ANKRD35Q8N283 1001 aa16.36■□□□□ 0.21
LIMS1-201ENST00000332345 NPLOC4Q8TAT6 608 aa16.36■□□□□ 0.21
LIMS1-201ENST00000332345 TRERF1Q96PN7 1200 aa16.36■□□□□ 0.21
LIMS1-201ENST00000332345 UBA5Q9GZZ9 404 aa16.36■□□□□ 0.21
LIMS1-201ENST00000332345 HMX1Q9NP08 348 aaPredicted RBP16.36■□□□□ 0.21
LIMS1-201ENST00000332345 DIS3Q9Y2L1 958 aaKnown RBP16.36■□□□□ 0.21
LIMS1-201ENST00000332345 ZNF536O15090 1300 aa16.36■□□□□ 0.21
LIMS1-201ENST00000332345 RPTORQ8N122 1335 aa16.36■□□□□ 0.21
LIMS1-201ENST00000332345 POTEFA5A3E0 1075 aa16.35■□□□□ 0.21
LIMS1-201ENST00000332345 GJB1P08034 283 aa16.35■□□□□ 0.21
LIMS1-201ENST00000332345 ALAS1P13196 640 aa16.35■□□□□ 0.21
LIMS1-201ENST00000332345 HSPA4P34932 840 aa16.35■□□□□ 0.21
LIMS1-201ENST00000332345 OLFML2BQ68BL8 750 aa16.35■□□□□ 0.21
LIMS1-201ENST00000332345 NFXL1Q6ZNB6 911 aa16.35■□□□□ 0.21
LIMS1-201ENST00000332345 DHX30Q7L2E3 1194 aaKnown RBP eCLIP16.35■□□□□ 0.21
LIMS1-201ENST00000332345 RASEFQ8IZ41 740 aa16.35■□□□□ 0.21
LIMS1-201ENST00000332345 KCNB2Q92953 911 aa16.35■□□□□ 0.21
LIMS1-201ENST00000332345 UNC93B1Q9H1C4 597 aa16.35■□□□□ 0.21
LIMS1-201ENST00000332345 ACAD9Q9H845 621 aa16.35■□□□□ 0.21
LIMS1-201ENST00000332345 LY9Q9HBG7 655 aa16.35■□□□□ 0.21
LIMS1-201ENST00000332345 HOMER2Q9NSB8 354 aa16.35■□□□□ 0.21
LIMS1-201ENST00000332345 CCPG1Q9ULG6 757 aa16.35■□□□□ 0.21
LIMS1-201ENST00000332345 CCDC69A6NI79 296 aa16.34■□□□□ 0.21
LIMS1-201ENST00000332345 KLRF2D3W0D1 207 aa16.34■□□□□ 0.21
LIMS1-201ENST00000332345 PGK2P07205 417 aa16.34■□□□□ 0.21
LIMS1-201ENST00000332345 LIFRP42702 1097 aa16.34■□□□□ 0.21
LIMS1-201ENST00000332345 CACNB2Q08289 660 aaPredicted RBP16.34■□□□□ 0.21
LIMS1-201ENST00000332345 DHX32Q7L7V1 743 aaKnown RBP16.34■□□□□ 0.21
LIMS1-201ENST00000332345 ADGRF4Q8IZF3 695 aa16.34■□□□□ 0.21
LIMS1-201ENST00000332345 MAP3K14Q99558 947 aa16.34■□□□□ 0.21
LIMS1-201ENST00000332345 RNF146Q9NTX7 359 aa16.34■□□□□ 0.21
LIMS1-201ENST00000332345 FLRT1Q9NZU1 646 aa16.34■□□□□ 0.21
LIMS1-201ENST00000332345 ZNF236Q9UL36 1845 aa16.33■□□□□ 0.21
LIMS1-201ENST00000332345 PALM3A6NDB9 673 aaPredicted RBP16.33■□□□□ 0.2
LIMS1-201ENST00000332345 DHX16O60231 1041 aaKnown RBP16.33■□□□□ 0.2
LIMS1-201ENST00000332345 PRKAR2AP13861 404 aaKnown RBP16.33■□□□□ 0.2
LIMS1-201ENST00000332345 EN2P19622 333 aaPredicted RBP16.33■□□□□ 0.2
LIMS1-201ENST00000332345 GJA8P48165 433 aa16.33■□□□□ 0.2
LIMS1-201ENST00000332345 TROAPQ12815 778 aa16.33■□□□□ 0.2
LIMS1-201ENST00000332345 TRIM32Q13049 653 aa16.33■□□□□ 0.2
LIMS1-201ENST00000332345 ZNF792Q3KQV3 632 aa16.33■□□□□ 0.2
LIMS1-201ENST00000332345 MAP3K21Q5TCX8 1036 aa16.33■□□□□ 0.2
LIMS1-201ENST00000332345 MAML3Q96JK9 1138 aa16.33■□□□□ 0.2
LIMS1-201ENST00000332345 USP26Q9BXU7 913 aa16.33■□□□□ 0.2
LIMS1-201ENST00000332345 SENP2Q9HC62 589 aa16.33■□□□□ 0.2
LIMS1-201ENST00000332345 VAT1LQ9HCJ6 419 aa16.33■□□□□ 0.2
LIMS1-201ENST00000332345 MAD2L2Q9UI95 211 aa16.33■□□□□ 0.2
LIMS1-201ENST00000332345 WDR19Q8NEZ3 1342 aa16.33■□□□□ 0.2
LIMS1-201ENST00000332345 BRCA2P51587 3418 aa16.33■□□□□ 0.2
LIMS1-201ENST00000332345 SMCHD1A6NHR9 2005 aa16.32■□□□□ 0.2
LIMS1-201ENST00000332345 SH2B2O14492 632 aaPredicted RBP16.32■□□□□ 0.2
LIMS1-201ENST00000332345 SGPL1O95470 568 aa16.32■□□□□ 0.2
LIMS1-201ENST00000332345 TFRCP02786 760 aaKnown RBP16.32■□□□□ 0.2
LIMS1-201ENST00000332345 CALM1P0DP23 149 aa16.32■□□□□ 0.2
LIMS1-201ENST00000332345 CALM2P0DP24 149 aa16.32■□□□□ 0.2
LIMS1-201ENST00000332345 CALM3P0DP25 149 aa16.32■□□□□ 0.2
LIMS1-201ENST00000332345 PSMA5P28066 241 aa16.32■□□□□ 0.2
LIMS1-201ENST00000332345 KIF5BP33176 963 aa16.32■□□□□ 0.2
LIMS1-201ENST00000332345 EXOSC10Q01780 885 aaKnown RBP16.32■□□□□ 0.2
LIMS1-201ENST00000332345 GRM4Q14833 912 aa16.32■□□□□ 0.2
LIMS1-201ENST00000332345 ADCK5Q3MIX3 580 aa16.32■□□□□ 0.2
LIMS1-201ENST00000332345 SYNE3Q6ZMZ3 975 aa16.32■□□□□ 0.2
LIMS1-201ENST00000332345 ZNF654Q8IZM8 581 aa16.32■□□□□ 0.2
LIMS1-201ENST00000332345 STAG2Q8N3U4 1231 aa16.32■□□□□ 0.2
LIMS1-201ENST00000332345 NUP133Q8WUM0 1156 aa16.32■□□□□ 0.2
LIMS1-201ENST00000332345 XRN2Q9H0D6 950 aaKnown RBP eCLIP16.32■□□□□ 0.2
LIMS1-201ENST00000332345 PAK6Q9NQU5 681 aaPredicted RBP16.32■□□□□ 0.2
LIMS1-201ENST00000332345 SNX14Q9Y5W7 946 aa16.32■□□□□ 0.2
LIMS1-201ENST00000332345 PLXNA1Q9UIW2 1896 aa16.31■□□□□ 0.2
LIMS1-201ENST00000332345 RBBP6Q7Z6E9 1792 aaKnown RBP16.31■□□□□ 0.2
LIMS1-201ENST00000332345 PFASO15067 1338 aa16.31■□□□□ 0.2
LIMS1-201ENST00000332345 DNAJC25-GNG10A0A024R161 153 aa16.31■□□□□ 0.2
LIMS1-201ENST00000332345 DDAH1O94760 285 aa16.31■□□□□ 0.2
LIMS1-201ENST00000332345 CYP2C19P33261 490 aa16.31■□□□□ 0.2
LIMS1-201ENST00000332345 MLLT1Q03111 559 aaPredicted RBP16.31■□□□□ 0.2
LIMS1-201ENST00000332345 MSL3Q8N5Y2 521 aaKnown RBP16.31■□□□□ 0.2
LIMS1-201ENST00000332345 CTCFLQ8NI51 663 aaPredicted RBP16.31■□□□□ 0.2
LIMS1-201ENST00000332345 U2AF1L4Q8WU68 220 aaKnown RBP16.31■□□□□ 0.2
LIMS1-201ENST00000332345 DEFB118Q96PH6 123 aa16.31■□□□□ 0.2
LIMS1-201ENST00000332345 LRRC2Q9BYS8 371 aa16.31■□□□□ 0.2
LIMS1-201ENST00000332345 CPVLQ9H3G5 476 aa16.31■□□□□ 0.2
LIMS1-201ENST00000332345 JMJD4Q9H9V9 463 aa16.31■□□□□ 0.2
LIMS1-201ENST00000332345 GPHNQ9NQX3 736 aaPredicted RBP16.31■□□□□ 0.2
LIMS1-201ENST00000332345 SLC12A7Q9Y666 1083 aa16.31■□□□□ 0.2
LIMS1-201ENST00000332345 MYH6P13533 1939 aa16.3■□□□□ 0.2
Retrieved 100 of 20,778 RNA–protein pairs in 18.7 ms