RNA–Protein interactions for RNA: YIL030C

SSM4, Transcript of Ubiquitin-protein ligase involved in ER-associated protein degradation, yeast

Gene SSM4, Length 3,960 nt, Biotype protein coding, Subcellular localisation Mitochondria .

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
SSM4	YIL030C	CHS2	P14180	963 aa		3.56	□□□□□ -1.84
SSM4	YIL030C	OCA4	P25366	362 aa		3.56	□□□□□ -1.84
SSM4	YIL030C	IMP3	P32899	183 aa	Predicted RBP	3.56	□□□□□ -1.84
SSM4	YIL030C	PET112	P33893	541 aa		3.56	□□□□□ -1.84
SSM4	YIL030C	TGL4	P36165	910 aa		3.56	□□□□□ -1.84
SSM4	YIL030C	YBL086C	P38177	466 aa		3.56	□□□□□ -1.84
SSM4	YIL030C	FES1	P38260	290 aa		3.56	□□□□□ -1.84
SSM4	YIL030C	PHO89	P38361	574 aa		3.56	□□□□□ -1.84
SSM4	YIL030C	YHK8	P38776	514 aa		3.56	□□□□□ -1.84
SSM4	YIL030C	BZZ1	P38822	633 aa		3.56	□□□□□ -1.84
SSM4	YIL030C	SEC31	P38968	1273 aa	Known RBP	3.56	□□□□□ -1.84
SSM4	YIL030C	PEX8	P53248	589 aa		3.56	□□□□□ -1.84
SSM4	YIL030C	VPS9	P54787	451 aa		3.56	□□□□□ -1.84
SSM4	YIL030C	PRP38	Q00723	242 aa	Predicted RBP	3.56	□□□□□ -1.84
SSM4	YIL030C	ESC8	Q08119	714 aa		3.56	□□□□□ -1.84
SSM4	YIL030C	RRT8	Q08219	342 aa		3.56	□□□□□ -1.84
SSM4	YIL030C	DIA2	Q08496	732 aa	Predicted RBP	3.56	□□□□□ -1.84
SSM4	YIL030C	ULA1	Q12059	462 aa		3.56	□□□□□ -1.84
SSM4	YIL030C	URA3	P03962	267 aa		3.55	□□□□□ -1.84
SSM4	YIL030C	SWI5	P08153	709 aa		3.55	□□□□□ -1.84
SSM4	YIL030C	MGT1	P26188	188 aa		3.55	□□□□□ -1.84
SSM4	YIL030C	MET4	P32389	672 aa		3.55	□□□□□ -1.84
SSM4	YIL030C	AIM26	P32858	118 aa		3.55	□□□□□ -1.84
SSM4	YIL030C	KES1	P35844	434 aa	Known RBP	3.55	□□□□□ -1.84
SSM4	YIL030C	SPC42	P36094	363 aa		3.55	□□□□□ -1.84
SSM4	YIL030C	TAT1	P38085	619 aa		3.55	□□□□□ -1.84
SSM4	YIL030C	OCA5	P38738	679 aa		3.55	□□□□□ -1.84
SSM4	YIL030C	ERC1	P38767	581 aa		3.55	□□□□□ -1.84
SSM4	YIL030C	UBP7	P40453	1071 aa		3.55	□□□□□ -1.84
SSM4	YIL030C	POP1	P41812	875 aa		3.55	□□□□□ -1.84
SSM4	YIL030C	COG2	P53271	262 aa		3.55	□□□□□ -1.84
SSM4	YIL030C	RSN1	Q03516	953 aa		3.55	□□□□□ -1.84
SSM4	YIL030C	RGC1	Q06108	1083 aa	Known RBP	3.55	□□□□□ -1.84
SSM4	YIL030C	SYT1	Q06836	1226 aa		3.55	□□□□□ -1.84
SSM4	YIL030C	SPE1	P08432	466 aa		3.55	□□□□□ -1.84
SSM4	YIL030C	RPL3	P14126	387 aa	Known RBP	3.55	□□□□□ -1.84
SSM4	YIL030C	TFS1	P14306	219 aa		3.55	□□□□□ -1.84
SSM4	YIL030C	HSC82	P15108	705 aa	Known RBP	3.55	□□□□□ -1.84
SSM4	YIL030C	DSS4	P32601	143 aa		3.55	□□□□□ -1.84
SSM4	YIL030C	GLC3	P32775	704 aa		3.55	□□□□□ -1.84
SSM4	YIL030C	IXR1	P33417	597 aa		3.55	□□□□□ -1.84
SSM4	YIL030C	MET18	P40469	1032 aa		3.55	□□□□□ -1.84
SSM4	YIL030C	YIL024C	P40543	189 aa		3.55	□□□□□ -1.84
SSM4	YIL030C	MSS2	P40990	351 aa		3.55	□□□□□ -1.84
SSM4	YIL030C	APS3	P47064	194 aa		3.55	□□□□□ -1.84
SSM4	YIL030C	SHE4	P51534	789 aa		3.55	□□□□□ -1.84
SSM4	YIL030C	CUL3	P53202	744 aa		3.55	□□□□□ -1.84
SSM4	YIL030C	YGR117C	P53270	476 aa		3.55	□□□□□ -1.84
SSM4	YIL030C	NMA111	P53920	997 aa		3.55	□□□□□ -1.84
SSM4	YIL030C	ABZ2	Q03266	374 aa		3.55	□□□□□ -1.84
SSM4	YIL030C	VHS1	Q03785	461 aa		3.55	□□□□□ -1.84
SSM4	YIL030C	SND1	Q04007	877 aa		3.55	□□□□□ -1.84
SSM4	YIL030C	GAD1	Q04792	585 aa		3.55	□□□□□ -1.84
SSM4	YIL030C	ASR1	Q06834	288 aa		3.55	□□□□□ -1.84
SSM4	YIL030C	UIP4	Q08926	304 aa		3.55	□□□□□ -1.84
SSM4	YIL030C	THI21	Q08975	551 aa		3.55	□□□□□ -1.84
SSM4	YIL030C	MCD1	Q12158	566 aa		3.55	□□□□□ -1.84
SSM4	YIL030C	ATP12	P22135	325 aa		3.55	□□□□□ -1.84
SSM4	YIL030C	CCR4	P31384	837 aa	Known RBP	3.55	□□□□□ -1.84
SSM4	YIL030C	MMS4	P38257	691 aa		3.55	□□□□□ -1.84
SSM4	YIL030C	UBC12	P52491	188 aa		3.55	□□□□□ -1.84
SSM4	YIL030C	SLD3	P53135	668 aa		3.55	□□□□□ -1.84
SSM4	YIL030C	SNU56	Q03782	492 aa	Known RBP	3.55	□□□□□ -1.84
SSM4	YIL030C	GMC2	Q06201	188 aa		3.55	□□□□□ -1.84
SSM4	YIL030C	RTC5	Q12108	567 aa	Known RBP	3.55	□□□□□ -1.84
SSM4	YIL030C	TY3A-G	Q12173	290 aa		3.55	□□□□□ -1.84
SSM4	YIL030C	TY3A-I	Q99219	290 aa		3.55	□□□□□ -1.84
SSM4	YIL030C	RHB1	P25378	209 aa		3.54	□□□□□ -1.84
SSM4	YIL030C	UTR2	P32623	467 aa		3.54	□□□□□ -1.84
SSM4	YIL030C	UTP30	P36144	274 aa	Known RBP	3.54	□□□□□ -1.84
SSM4	YIL030C	GPX2	P38143	162 aa		3.54	□□□□□ -1.84
SSM4	YIL030C	TRM5	P38793	499 aa		3.54	□□□□□ -1.84
SSM4	YIL030C	ORC6	P38826	435 aa		3.54	□□□□□ -1.84
SSM4	YIL030C	RAD55	P38953	406 aa		3.54	□□□□□ -1.84
SSM4	YIL030C	HPM1	P40481	377 aa		3.54	□□□□□ -1.84
SSM4	YIL030C	TED1	P40533	473 aa		3.54	□□□□□ -1.84
SSM4	YIL030C	HST2	P53686	357 aa		3.54	□□□□□ -1.84
SSM4	YIL030C	NPL3	Q01560	414 aa	Known RBP RIP-Chip data	3.54	□□□□□ -1.84	not detected
SSM4	YIL030C	ECM38	Q05902	660 aa	Predicted RBP	3.54	□□□□□ -1.84
SSM4	YIL030C	MCP2	Q06567	569 aa		3.54	□□□□□ -1.84
SSM4	YIL030C	THI20	Q08224	551 aa		3.54	□□□□□ -1.84
SSM4	YIL030C	VHS3	Q08438	674 aa		3.54	□□□□□ -1.84
SSM4	YIL030C	RPN8	Q08723	338 aa	Known RBP	3.54	□□□□□ -1.84
SSM4	YIL030C	UAF30	Q08747	228 aa		3.54	□□□□□ -1.84
SSM4	YIL030C	RTT10	Q08924	1013 aa		3.54	□□□□□ -1.84
SSM4	YIL030C	TRM8	Q12009	286 aa		3.54	□□□□□ -1.84
SSM4	YIL030C	YPR063C	Q12160	140 aa		3.54	□□□□□ -1.84
SSM4	YIL030C	ATP16	Q12165	160 aa		3.54	□□□□□ -1.84
SSM4	YIL030C	FRT1	Q99332	602 aa		3.54	□□□□□ -1.84
SSM4	YIL030C	BCY1	P07278	416 aa	Known RBP	3.54	□□□□□ -1.84
SSM4	YIL030C	MDH1	P17505	334 aa	Known RBP RIP-Chip data	3.54	□□□□□ -1.84	not detected
SSM4	YIL030C	SLY1	P22213	666 aa		3.54	□□□□□ -1.84
SSM4	YIL030C	YCR090C	P25654	182 aa	Known RBP	3.54	□□□□□ -1.84
SSM4	YIL030C	MEI4	P29467	408 aa		3.54	□□□□□ -1.84
SSM4	YIL030C	RGT1	P32862	1170 aa		3.54	□□□□□ -1.84
SSM4	YIL030C	HIS7	P33734	552 aa	Known RBP	3.54	□□□□□ -1.84
SSM4	YIL030C	CBT1	P36038	271 aa	Predicted RBP	3.54	□□□□□ -1.84
SSM4	YIL030C	YKR078W	P36158	585 aa	Known RBP	3.54	□□□□□ -1.84
SSM4	YIL030C	TSL1	P38427	1098 aa	Known RBP	3.54	□□□□□ -1.84
SSM4	YIL030C	GUA1	P38625	525 aa	Known RBP	3.54	□□□□□ -1.84

Retrieved 100 of 5,963 RNA–protein pairs in 20.7 ms