RNA–Protein interactions for RNA: YHR200W

RPN10, Transcript of Non-ATPase base subunit of the 19S RP of the 26S proteasome, yeast

Gene RPN10, Length 807 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
RPN10	YHR200W	PRM2	P40534	656 aa		13.76	□□□□□ -0.21
RPN10	YHR200W	CCT7	P42943	550 aa	Known RBP	13.76	□□□□□ -0.21
RPN10	YHR200W	TGL2	P54857	326 aa		13.76	□□□□□ -0.21
RPN10	YHR200W	PEX13	P80667	386 aa		13.76	□□□□□ -0.21
RPN10	YHR200W	UBP2	Q01476	1272 aa		13.76	□□□□□ -0.21
RPN10	YHR200W	YPL109C	Q02981	657 aa		13.76	□□□□□ -0.21
RPN10	YHR200W	TAF12	Q03761	539 aa		13.76	□□□□□ -0.21
RPN10	YHR200W	YDR338C	Q05497	695 aa		13.76	□□□□□ -0.21
RPN10	YHR200W	ENT4	Q07872	247 aa		13.76	□□□□□ -0.21
RPN10	YHR200W	MRH1	Q12117	320 aa	Predicted RBP	13.76	□□□□□ -0.21
RPN10	YHR200W	STB3	Q12427	513 aa		13.76	□□□□□ -0.21
RPN10	YHR200W	CPA1	P07258	411 aa	Known RBP	13.75	□□□□□ -0.21
RPN10	YHR200W	SPS1	P08458	490 aa		13.75	□□□□□ -0.21
RPN10	YHR200W	PHO3	P24031	467 aa		13.75	□□□□□ -0.21
RPN10	YHR200W	GUT1	P32190	709 aa		13.75	□□□□□ -0.21
RPN10	YHR200W	YKL097C	P34245	136 aa		13.75	□□□□□ -0.21
RPN10	YHR200W	DCW1	P36091	449 aa		13.75	□□□□□ -0.21
RPN10	YHR200W	DBP8	P38719	431 aa		13.75	□□□□□ -0.21
RPN10	YHR200W	COG7	P53195	279 aa		13.75	□□□□□ -0.21
RPN10	YHR200W	NNF2	P53253	936 aa		13.75	□□□□□ -0.21
RPN10	YHR200W	NOP19	P53317	196 aa	Predicted RBP	13.75	□□□□□ -0.21
RPN10	YHR200W	CUS2	P53830	285 aa	Predicted RBP	13.75	□□□□□ -0.21
RPN10	YHR200W	GOT1	Q03554	138 aa		13.75	□□□□□ -0.21
RPN10	YHR200W	RCO1	Q04779	684 aa		13.75	□□□□□ -0.21
RPN10	YHR200W	YPT52	P36018	234 aa	Known RBP	13.74	□□□□□ -0.21
RPN10	YHR200W	YHR045W	P38775	560 aa		13.74	□□□□□ -0.21
RPN10	YHR200W	YIR007W	P40566	764 aa		13.74	□□□□□ -0.21
RPN10	YHR200W	SHY1	P53266	389 aa		13.74	□□□□□ -0.21
RPN10	YHR200W	GTR2	P53290	341 aa		13.74	□□□□□ -0.21
RPN10	YHR200W	ARP4	P80428	489 aa		13.74	□□□□□ -0.21
RPN10	YHR200W	YPR084W	Q06821	456 aa		13.74	□□□□□ -0.21
RPN10	YHR200W	IRC10	Q08118	586 aa		13.74	□□□□□ -0.21
RPN10	YHR200W	CAR1	P00812	333 aa	Known RBP	13.73	□□□□□ -0.21
RPN10	YHR200W	SEC63	P14906	663 aa		13.73	□□□□□ -0.21
RPN10	YHR200W	PWP1	P21304	576 aa	Known RBP	13.73	□□□□□ -0.21
RPN10	YHR200W	EPT1	P22140	391 aa		13.73	□□□□□ -0.21
RPN10	YHR200W	VAN1	P23642	535 aa		13.73	□□□□□ -0.21
RPN10	YHR200W	PDB1	P32473	366 aa	Known RBP	13.73	□□□□□ -0.21
RPN10	YHR200W	SPR1	P32603	445 aa		13.73	□□□□□ -0.21
RPN10	YHR200W	PCL5	P38794	229 aa		13.73	□□□□□ -0.21
RPN10	YHR200W	GDH3	P39708	457 aa		13.73	□□□□□ -0.21
RPN10	YHR200W	YER034W	P40022	185 aa	Known RBP	13.73	□□□□□ -0.21
RPN10	YHR200W	COA1	P40452	197 aa		13.73	□□□□□ -0.21
RPN10	YHR200W	YRB1	P41920	201 aa	Known RBP	13.73	□□□□□ -0.21
RPN10	YHR200W	SET2	P46995	733 aa	Known RBP	13.73	□□□□□ -0.21
RPN10	YHR200W	NMA2	P53204	395 aa		13.73	□□□□□ -0.21
RPN10	YHR200W	HEL2	Q05580	639 aa	Known RBP	13.73	□□□□□ -0.21
RPN10	YHR200W	RIB2	Q12362	591 aa	Known RBP	13.73	□□□□□ -0.21
RPN10	YHR200W	YPL247C	Q12523	523 aa		13.73	□□□□□ -0.21
RPN10	YHR200W	PRP6	P19735	899 aa	Predicted RBP	13.72	□□□□□ -0.21
RPN10	YHR200W	MRPL9	P31334	269 aa		13.72	□□□□□ -0.21
RPN10	YHR200W	COX13	P32799	129 aa		13.72	□□□□□ -0.21
RPN10	YHR200W	CUE2	P36075	443 aa	Known RBP	13.72	□□□□□ -0.21
RPN10	YHR200W	IRS4	P36115	615 aa	Known RBP	13.72	□□□□□ -0.21
RPN10	YHR200W	SSN3	P39073	555 aa		13.72	□□□□□ -0.21
RPN10	YHR200W	SCS2	P40075	244 aa	Known RBP	13.72	□□□□□ -0.21
RPN10	YHR200W	YGL108C	P53139	140 aa		13.72	□□□□□ -0.21
RPN10	YHR200W	SSL1	Q04673	461 aa	Predicted RBP	13.72	□□□□□ -0.21
RPN10	YHR200W	POL30	P15873	258 aa	Known RBP	13.71	□□□□□ -0.21
RPN10	YHR200W	GAL11	P19659	1081 aa		13.71	□□□□□ -0.21
RPN10	YHR200W	PMT1	P33775	817 aa		13.71	□□□□□ -0.21
RPN10	YHR200W	THI80	P35202	319 aa		13.71	□□□□□ -0.21
RPN10	YHR200W	EAP1	P36041	632 aa	Known RBP	13.71	□□□□□ -0.21
RPN10	YHR200W	VRP1	P37370	817 aa		13.71	□□□□□ -0.21
RPN10	YHR200W	ARP1	P38696	384 aa		13.71	□□□□□ -0.21
RPN10	YHR200W	YHR078W	P38799	552 aa		13.71	□□□□□ -0.21
RPN10	YHR200W	MPT5	P39016	859 aa	Known RBP RIP-Chip data	13.71	□□□□□ -0.21	not detected
RPN10	YHR200W	DHH1	P39517	506 aa	Known RBP	13.71	□□□□□ -0.21
RPN10	YHR200W	SER33	P40510	469 aa		13.71	□□□□□ -0.21
RPN10	YHR200W	FRE4	P53746	719 aa		13.71	□□□□□ -0.21
RPN10	YHR200W	YML131W	Q03102	365 aa		13.71	□□□□□ -0.21
RPN10	YHR200W	BCH1	Q05029	724 aa		13.71	□□□□□ -0.21
RPN10	YHR200W	VAM6	Q07468	1049 aa		13.71	□□□□□ -0.21
RPN10	YHR200W	ARD1	P07347	238 aa	Predicted RBP	13.7	□□□□□ -0.22
RPN10	YHR200W	YKL151C	P36059	337 aa		13.7	□□□□□ -0.22
RPN10	YHR200W	RIM11	P38615	370 aa		13.7	□□□□□ -0.22
RPN10	YHR200W	ARN1	P38731	627 aa		13.7	□□□□□ -0.22
RPN10	YHR200W	YNL010W	P53981	241 aa	Known RBP	13.7	□□□□□ -0.22
RPN10	YHR200W	SMF3	Q12078	473 aa	Predicted RBP	13.7	□□□□□ -0.22
RPN10	YHR200W	ART10	P18634	518 aa	Known RBP	13.69	□□□□□ -0.22
RPN10	YHR200W	PHO84	P25297	587 aa	Known RBP	13.69	□□□□□ -0.22
RPN10	YHR200W	RAD14	P28519	371 aa		13.69	□□□□□ -0.22
RPN10	YHR200W	PPX1	P38698	397 aa		13.69	□□□□□ -0.22
RPN10	YHR200W	YNR061C	P53747	219 aa		13.69	□□□□□ -0.22
RPN10	YHR200W	GRS2	Q06817	618 aa		13.69	□□□□□ -0.22
RPN10	YHR200W	PHO87	P25360	923 aa		13.68	□□□□□ -0.22
RPN10	YHR200W	SFP1	P32432	683 aa		13.68	□□□□□ -0.22
RPN10	YHR200W	SIP2	P34164	415 aa	Known RBP	13.68	□□□□□ -0.22
RPN10	YHR200W	RPF2	P36160	344 aa	Known RBP	13.68	□□□□□ -0.22
RPN10	YHR200W	IML3	P38265	245 aa		13.68	□□□□□ -0.22
RPN10	YHR200W	YHL008C	P38750	627 aa		13.68	□□□□□ -0.22
RPN10	YHR200W	HSE1	P38753	452 aa		13.68	□□□□□ -0.22
RPN10	YHR200W	CYC2	P38909	366 aa		13.68	□□□□□ -0.22
RPN10	YHR200W	USE1	P53146	245 aa		13.68	□□□□□ -0.22
RPN10	YHR200W	TDA7	P53882	636 aa	Predicted RBP	13.68	□□□□□ -0.22
RPN10	YHR200W	RSC3	Q06639	885 aa		13.68	□□□□□ -0.22
RPN10	YHR200W	YKR104W	P0CE69	306 aa		13.67	□□□□□ -0.22
RPN10	YHR200W	RPS1A	P33442	255 aa	Known RBP	13.67	□□□□□ -0.22
RPN10	YHR200W	NUP120	P35729	1037 aa		13.67	□□□□□ -0.22
RPN10	YHR200W	CCT6	P39079	546 aa		13.67	□□□□□ -0.22

Retrieved 100 of 5,963 RNA–protein pairs in 15.5 ms