RNA–Protein interactions for RNA: ENST00000563739.5

SF3B3-204, Transcript of splicing factor 3b subunit 3, humanhuman

TSL 2

Gene SF3B3, Length 1,105 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3B3-204ENST00000563739 FCER1AP12319 257 aa12.6□□□□□ -0.39
SF3B3-204ENST00000563739 AKR1A1P14550 325 aa12.6□□□□□ -0.39
SF3B3-204ENST00000563739 PTGS1P23219 599 aa12.6□□□□□ -0.39
SF3B3-204ENST00000563739 ICA1Q05084 483 aa12.6□□□□□ -0.39
SF3B3-204ENST00000563739 RNF180Q86T96 592 aa12.6□□□□□ -0.39
SF3B3-204ENST00000563739 CERS3Q8IU89 383 aa12.6□□□□□ -0.39
SF3B3-204ENST00000563739 FAM126BQ8IXS8 530 aa12.6□□□□□ -0.39
SF3B3-204ENST00000563739 PPM1EQ8WY54 764 aa12.6□□□□□ -0.39
SF3B3-204ENST00000563739 MMP19Q99542 508 aa12.6□□□□□ -0.39
SF3B3-204ENST00000563739 TSEN34Q9BSV6 310 aaKnown RBP12.6□□□□□ -0.39
SF3B3-204ENST00000563739 UPF3AQ9H1J1 476 aaKnown RBP12.6□□□□□ -0.39
SF3B3-204ENST00000563739 PPP1R9AQ9ULJ8 1098 aa12.6□□□□□ -0.39
SF3B3-204ENST00000563739 RIPK3Q9Y572 518 aa12.6□□□□□ -0.39
SF3B3-204ENST00000563739 ZBED9Q6R2W3 1325 aa12.6□□□□□ -0.39
SF3B3-204ENST00000563739 TANC1Q9C0D5 1861 aa12.59□□□□□ -0.39
SF3B3-204ENST00000563739 BRWD1Q9NSI6 2320 aa12.59□□□□□ -0.39
SF3B3-204ENST00000563739 MAGEB6P1A0A0J9YX57 407 aa12.59□□□□□ -0.39
SF3B3-204ENST00000563739 MPHOSPH10O00566 681 aaKnown RBP12.59□□□□□ -0.39
SF3B3-204ENST00000563739 SLC25A27O95847 323 aa12.59□□□□□ -0.39
SF3B3-204ENST00000563739 CD4P01730 458 aa12.59□□□□□ -0.39
SF3B3-204ENST00000563739 KCNA10Q16322 511 aa12.59□□□□□ -0.39
SF3B3-204ENST00000563739 ZNF365Q70YC5 407 aa12.59□□□□□ -0.39
SF3B3-204ENST00000563739 DHX30Q7L2E3 1194 aaKnown RBP eCLIP12.59□□□□□ -0.39
SF3B3-204ENST00000563739 UHRF1Q96T88 793 aaPredicted RBP12.59□□□□□ -0.39
SF3B3-204ENST00000563739 STARD7Q9NQZ5 370 aa12.59□□□□□ -0.39
SF3B3-204ENST00000563739 MCM9Q9NXL9 1143 aa12.59□□□□□ -0.39
SF3B3-204ENST00000563739 ZNF532Q9HCE3 1301 aa12.59□□□□□ -0.39
SF3B3-204ENST00000563739 MOXD2PA6NHM9 499 aa12.58□□□□□ -0.4
SF3B3-204ENST00000563739 POLR3DP05423 398 aaPredicted RBP12.58□□□□□ -0.4
SF3B3-204ENST00000563739 BMP1P13497 986 aa12.58□□□□□ -0.4
SF3B3-204ENST00000563739 MAMDC4Q6UXC1 1216 aa12.58□□□□□ -0.4
SF3B3-204ENST00000563739 NKX2-4Q9H2Z4 354 aa12.58□□□□□ -0.4
SF3B3-204ENST00000563739 GRIN2DO15399 1336 aa12.58□□□□□ -0.4
SF3B3-204ENST00000563739 SYNGAP1Q96PV0 1343 aa12.58□□□□□ -0.4
SF3B3-204ENST00000563739 RBAK-RBAKDNI3L0D1 243 aa12.57□□□□□ -0.4
SF3B3-204ENST00000563739 ARHGEF15O94989 841 aa12.57□□□□□ -0.4
SF3B3-204ENST00000563739 EEF2P13639 858 aaKnown RBP12.57□□□□□ -0.4
SF3B3-204ENST00000563739 STAT3P40763 770 aa12.57□□□□□ -0.4
SF3B3-204ENST00000563739 NKX3-2P78367 333 aa12.57□□□□□ -0.4
SF3B3-204ENST00000563739 TFF2Q03403 129 aa12.57□□□□□ -0.4
SF3B3-204ENST00000563739 MAP3K12Q12852 859 aa12.57□□□□□ -0.4
SF3B3-204ENST00000563739 CCDC85BQ15834 202 aaPredicted RBP12.57□□□□□ -0.4
SF3B3-204ENST00000563739 FAM83BQ5T0W9 1011 aa12.57□□□□□ -0.4
SF3B3-204ENST00000563739 CEP85Q6P2H3 762 aa12.57□□□□□ -0.4
SF3B3-204ENST00000563739 TMED8Q6PL24 325 aaPredicted RBP12.57□□□□□ -0.4
SF3B3-204ENST00000563739 SLC43A3Q8NBI5 491 aa12.57□□□□□ -0.4
SF3B3-204ENST00000563739 HERVK_113Q902F9 699 aa12.57□□□□□ -0.4
SF3B3-204ENST00000563739 KHSRPQ92945 711 aaKnown RBP eCLIP12.57□□□□□ -0.44e-7■□□□□ 9.1
SF3B3-204ENST00000563739 NUP88Q99567 741 aaPredicted RBP12.57□□□□□ -0.4
SF3B3-204ENST00000563739 PPP1R12CQ9BZL4 782 aa12.57□□□□□ -0.4
SF3B3-204ENST00000563739 WNT8AQ9H1J5 351 aa12.57□□□□□ -0.4
SF3B3-204ENST00000563739 ARMT1Q9H993 441 aa12.57□□□□□ -0.4
SF3B3-204ENST00000563739 SLC5A4Q9NY91 659 aa12.57□□□□□ -0.4
SF3B3-204ENST00000563739 EXOC6BQ9Y2D4 811 aa12.57□□□□□ -0.4
SF3B3-204ENST00000563739 ELP1O95163 1332 aa12.57□□□□□ -0.4
SF3B3-204ENST00000563739 EPOPA6NHQ4 379 aa12.56□□□□□ -0.4
SF3B3-204ENST00000563739 DCDC2CA8MYV0 355 aa12.56□□□□□ -0.4
SF3B3-204ENST00000563739 DUSP11O75319 330 aaKnown RBP12.56□□□□□ -0.4
SF3B3-204ENST00000563739 ASGR1P07306 291 aa12.56□□□□□ -0.4
SF3B3-204ENST00000563739 MYOGP15173 224 aa12.56□□□□□ -0.4
SF3B3-204ENST00000563739 CYP2C18P33260 490 aa12.56□□□□□ -0.4
SF3B3-204ENST00000563739 CDK8P49336 464 aa12.56□□□□□ -0.4
SF3B3-204ENST00000563739 GJA9P57773 515 aa12.56□□□□□ -0.4
SF3B3-204ENST00000563739 PPIGQ13427 754 aaKnown RBP eCLIP12.56□□□□□ -0.41e-7■□□□□ 10.7
SF3B3-204ENST00000563739 OS9Q13438 667 aaPredicted RBP12.56□□□□□ -0.4
SF3B3-204ENST00000563739 SLC9C2Q5TAH2 1124 aa12.56□□□□□ -0.4
SF3B3-204ENST00000563739 C12orf60Q5U649 245 aa12.56□□□□□ -0.4
SF3B3-204ENST00000563739 SAMD1Q6SPF0 538 aaPredicted RBP12.56□□□□□ -0.4
SF3B3-204ENST00000563739 C16orf86Q6ZW13 317 aa12.56□□□□□ -0.4
SF3B3-204ENST00000563739 FRAT1Q92837 279 aaPredicted RBP12.56□□□□□ -0.4
SF3B3-204ENST00000563739 GAS2L1Q99501 681 aaPredicted RBP12.56□□□□□ -0.4
SF3B3-204ENST00000563739 CRNKL1Q9BZJ0 848 aaKnown RBP12.56□□□□□ -0.4
SF3B3-204ENST00000563739 C11orf16Q9NQ32 467 aa12.56□□□□□ -0.4
SF3B3-204ENST00000563739 SWAP70Q9UH65 585 aa12.56□□□□□ -0.4
SF3B3-204ENST00000563739 DDX49Q9Y6V7 483 aaKnown RBP12.56□□□□□ -0.4
SF3B3-204ENST00000563739 TET1Q8NFU7 2136 aa12.56□□□□□ -0.4
SF3B3-204ENST00000563739 C11orf97A0A1B0GVM6 126 aaPredicted RBP12.55□□□□□ -0.4
SF3B3-204ENST00000563739 ARVCFO00192 962 aa12.55□□□□□ -0.4
SF3B3-204ENST00000563739 KCNQ1P51787 676 aa12.55□□□□□ -0.4
SF3B3-204ENST00000563739 MRPS5P82675 430 aaKnown RBP12.55□□□□□ -0.4
SF3B3-204ENST00000563739 KCTD2Q14681 263 aa12.55□□□□□ -0.4
SF3B3-204ENST00000563739 AACSQ86V21 672 aa12.55□□□□□ -0.4
SF3B3-204ENST00000563739 ARHGEF10LQ9HCE6 1279 aa12.55□□□□□ -0.4
SF3B3-204ENST00000563739 IL1RAPL2Q9NP60 686 aa12.55□□□□□ -0.4
SF3B3-204ENST00000563739 IL23AQ9NPF7 189 aa12.55□□□□□ -0.4
SF3B3-204ENST00000563739 CDKN2AIPQ9NXV6 580 aaPredicted RBP12.55□□□□□ -0.4
SF3B3-204ENST00000563739 ZHX1Q9UKY1 873 aaPredicted RBP12.55□□□□□ -0.4
SF3B3-204ENST00000563739 MBD4O95243 580 aa12.54□□□□□ -0.4
SF3B3-204ENST00000563739 ADD2P35612 726 aa12.54□□□□□ -0.4
SF3B3-204ENST00000563739 RABGGTBP53611 331 aa12.54□□□□□ -0.4
SF3B3-204ENST00000563739 TMEM63BQ5T3F8 832 aa12.54□□□□□ -0.4
SF3B3-204ENST00000563739 PSRC1Q6PGN9 363 aaPredicted RBP12.54□□□□□ -0.4
SF3B3-204ENST00000563739 SPRED2Q7Z698 418 aa12.54□□□□□ -0.4
SF3B3-204ENST00000563739 ZNF467Q7Z7K2 595 aaPredicted RBP12.54□□□□□ -0.4
SF3B3-204ENST00000563739 MSL3Q8N5Y2 521 aaKnown RBP12.54□□□□□ -0.4
SF3B3-204ENST00000563739 FAM184BQ9ULE4 1060 aa12.54□□□□□ -0.4
SF3B3-204ENST00000563739 SCN10AQ9Y5Y9 1956 aa12.54□□□□□ -0.4
SF3B3-204ENST00000563739 MUC6Q6W4X9 2439 aa12.53□□□□□ -0.4
SF3B3-204ENST00000563739 IGKV6D-41A0A0C4DH26 115 aa12.53□□□□□ -0.4
SF3B3-204ENST00000563739 A0A0U1RQG5 324 aaPredicted RBP12.53□□□□□ -0.4
Retrieved 100 of 20,778 RNA–protein pairs in 66.4 ms