RNA–Protein interactions for RNA: YKL139W

CTK1, Transcript of Catalytic (alpha) subunit of C-terminal domain kinase I (CTDK-I), yeast

Gene CTK1, Length 1,587 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
CTK1	YKL139W	RPL7B	Q12213	244 aa	Known RBP	4.23	□□□□□ -1.73
CTK1	YKL139W	RTC1	Q08281	1341 aa		4.22	□□□□□ -1.73
CTK1	YKL139W	HXK2	P04807	486 aa	Known RBP	4.22	□□□□□ -1.73
CTK1	YKL139W	ILV2	P07342	687 aa	Known RBP	4.22	□□□□□ -1.73
CTK1	YKL139W	PMA2	P19657	947 aa		4.22	□□□□□ -1.73
CTK1	YKL139W	PTC6	P25646	442 aa		4.22	□□□□□ -1.73
CTK1	YKL139W	SAS3	P34218	831 aa		4.22	□□□□□ -1.73
CTK1	YKL139W	VID24	P38263	362 aa		4.22	□□□□□ -1.73
CTK1	YKL139W	MUP3	P38734	546 aa		4.22	□□□□□ -1.73
CTK1	YKL139W	ECM10	P39987	644 aa		4.22	□□□□□ -1.73
CTK1	YKL139W	PHM8	P40025	321 aa		4.22	□□□□□ -1.73
CTK1	YKL139W	YJL068C	P40363	299 aa		4.22	□□□□□ -1.73
CTK1	YKL139W	ASG1	P40467	964 aa		4.22	□□□□□ -1.73
CTK1	YKL139W	IRC8	P47046	822 aa		4.22	□□□□□ -1.73
CTK1	YKL139W	ERO1	Q03103	563 aa		4.22	□□□□□ -1.73
CTK1	YKL139W	ARG7	Q04728	441 aa		4.22	□□□□□ -1.73
CTK1	YKL139W	VPS38	Q05919	439 aa		4.22	□□□□□ -1.73
CTK1	YKL139W	LUC7	Q07508	261 aa	Predicted RBP	4.22	□□□□□ -1.73
CTK1	YKL139W	ISA2	Q12425	185 aa		4.22	□□□□□ -1.73
CTK1	YKL139W	DMC1	P25453	334 aa		4.21	□□□□□ -1.74
CTK1	YKL139W	CDC60	P26637	1090 aa	Known RBP	4.21	□□□□□ -1.74
CTK1	YKL139W	ADE17	P38009	592 aa	Known RBP	4.21	□□□□□ -1.74
CTK1	YKL139W	DIA4	P38705	446 aa	Predicted RBP	4.21	□□□□□ -1.74
CTK1	YKL139W	CHS7	P38843	316 aa		4.21	□□□□□ -1.74
CTK1	YKL139W	OPT1	P40897	799 aa		4.21	□□□□□ -1.74
CTK1	YKL139W	TDA10	P42938	290 aa		4.21	□□□□□ -1.74
CTK1	YKL139W	YFR020W	P43600	232 aa		4.21	□□□□□ -1.74
CTK1	YKL139W	DPB11	P47027	764 aa	Predicted RBP	4.21	□□□□□ -1.74
CTK1	YKL139W	VID30	P53076	958 aa		4.21	□□□□□ -1.74
CTK1	YKL139W	MAK10	Q02197	733 aa		4.21	□□□□□ -1.74
CTK1	YKL139W	RMT2	Q03305	412 aa		4.21	□□□□□ -1.74
CTK1	YKL139W	RPC11	Q04307	110 aa	Predicted RBP	4.21	□□□□□ -1.74
CTK1	YKL139W	CYK3	Q07533	885 aa		4.21	□□□□□ -1.74
CTK1	YKL139W	LEA1	Q08963	238 aa	Predicted RBP	4.21	□□□□□ -1.74
CTK1	YKL139W	PUS9	Q12069	462 aa		4.21	□□□□□ -1.74
CTK1	YKL139W	GAL80	P04387	435 aa		4.2	□□□□□ -1.74
CTK1	YKL139W	PET111	P08468	800 aa		4.2	□□□□□ -1.74
CTK1	YKL139W	CDC43	P18898	376 aa		4.2	□□□□□ -1.74
CTK1	YKL139W	ADK2	P26364	225 aa		4.2	□□□□□ -1.74
CTK1	YKL139W	ECM32	P32644	1121 aa	Known RBP	4.2	□□□□□ -1.74
CTK1	YKL139W	LRP1	P38801	184 aa	Known RBP	4.2	□□□□□ -1.74
CTK1	YKL139W	DIA3	P52290	468 aa		4.2	□□□□□ -1.74
CTK1	YKL139W	IST1	P53843	298 aa	Predicted RBP	4.2	□□□□□ -1.74
CTK1	YKL139W	RCF1	Q03713	159 aa		4.2	□□□□□ -1.74
CTK1	YKL139W	YDR239C	Q03780	787 aa		4.2	□□□□□ -1.74
CTK1	YKL139W	GIS1	Q03833	894 aa		4.2	□□□□□ -1.74
CTK1	YKL139W	ECM22	Q05958	814 aa	Predicted RBP	4.2	□□□□□ -1.74
CTK1	YKL139W	YLR345W	Q06137	509 aa		4.2	□□□□□ -1.74
CTK1	YKL139W	FMP40	Q08968	688 aa	Predicted RBP	4.2	□□□□□ -1.74
CTK1	YKL139W	MRH1	Q12117	320 aa	Predicted RBP	4.2	□□□□□ -1.74
CTK1	YKL139W	ATG9	Q12142	997 aa		4.2	□□□□□ -1.74
CTK1	YKL139W	AVL9	Q12500	764 aa		4.2	□□□□□ -1.74
CTK1	YKL139W	MF(ALPHA)1	P01149	165 aa		4.19	□□□□□ -1.74
CTK1	YKL139W	HSP82	P02829	709 aa	Known RBP	4.19	□□□□□ -1.74
CTK1	YKL139W	CLB3	P24870	427 aa		4.19	□□□□□ -1.74
CTK1	YKL139W	ADH7	P25377	361 aa		4.19	□□□□□ -1.74
CTK1	YKL139W	AAD3	P25612	363 aa		4.19	□□□□□ -1.74
CTK1	YKL139W	GSH1	P32477	678 aa		4.19	□□□□□ -1.74
CTK1	YKL139W	TCD2	P36101	447 aa	Known RBP	4.19	□□□□□ -1.74
CTK1	YKL139W	CST26	P38226	397 aa		4.19	□□□□□ -1.74
CTK1	YKL139W	EXO1	P39875	702 aa		4.19	□□□□□ -1.74
CTK1	YKL139W	RPN11	P43588	306 aa	Known RBP	4.19	□□□□□ -1.74
CTK1	YKL139W	VPS73	P53142	486 aa	Known RBP	4.19	□□□□□ -1.74
CTK1	YKL139W	SGF73	P53165	657 aa		4.19	□□□□□ -1.74
CTK1	YKL139W	GND2	P53319	492 aa		4.19	□□□□□ -1.74
CTK1	YKL139W	MRD1	Q06106	887 aa	Known RBP	4.19	□□□□□ -1.74
CTK1	YKL139W	RAD34	Q06665	692 aa		4.19	□□□□□ -1.74
CTK1	YKL139W	YOL159C	Q08300	171 aa		4.19	□□□□□ -1.74
CTK1	YKL139W	ATG29	Q12092	213 aa		4.19	□□□□□ -1.74
CTK1	YKL139W	INP53	Q12271	1107 aa		4.19	□□□□□ -1.74
CTK1	YKL139W	SGS1	P35187	1447 aa		4.19	□□□□□ -1.74
CTK1	YKL139W	YMR084W	A2P2R3	262 aa		4.19	□□□□□ -1.74
CTK1	YKL139W	ILS1	P09436	1072 aa	Known RBP	4.19	□□□□□ -1.74
CTK1	YKL139W	KGD1	P20967	1014 aa	Known RBP	4.19	□□□□□ -1.74
CTK1	YKL139W	SAT4	P25333	603 aa	Known RBP	4.19	□□□□□ -1.74
CTK1	YKL139W	SSE2	P32590	693 aa	Known RBP	4.19	□□□□□ -1.74
CTK1	YKL139W	EMP70	P32802	667 aa		4.19	□□□□□ -1.74
CTK1	YKL139W	TIF3	P34167	436 aa	Known RBP	4.19	□□□□□ -1.74
CTK1	YKL139W	SEF1	P34228	1148 aa		4.19	□□□□□ -1.74
CTK1	YKL139W	GCS1	P35197	352 aa		4.19	□□□□□ -1.74
CTK1	YKL139W	STB6	P36085	766 aa		4.19	□□□□□ -1.74
CTK1	YKL139W	APE4	P38821	490 aa		4.19	□□□□□ -1.74
CTK1	YKL139W	UIP3	P39547	235 aa		4.19	□□□□□ -1.74
CTK1	YKL139W	PKP1	P40530	394 aa		4.19	□□□□□ -1.74
CTK1	YKL139W	PET130	P47065	347 aa		4.19	□□□□□ -1.74
CTK1	YKL139W	IMD4	P50094	524 aa	Known RBP	4.19	□□□□□ -1.74
CTK1	YKL139W	YPR003C	P53394	754 aa		4.19	□□□□□ -1.74
CTK1	YKL139W	ARO10	Q06408	635 aa		4.19	□□□□□ -1.74
CTK1	YKL139W	RLM1	Q12224	676 aa		4.19	□□□□□ -1.74
CTK1	YKL139W	YRF1-4	O13559	1382 aa		4.18	□□□□□ -1.74
CTK1	YKL139W	HEM1	P09950	548 aa	Predicted RBP	4.18	□□□□□ -1.74
CTK1	YKL139W	PDA1	P16387	420 aa	Known RBP	4.18	□□□□□ -1.74
CTK1	YKL139W	YMC1	P32331	307 aa		4.18	□□□□□ -1.74
CTK1	YKL139W	UGP1	P32861	499 aa	Known RBP	4.18	□□□□□ -1.74
CTK1	YKL139W	WBP1	P33767	430 aa	Known RBP	4.18	□□□□□ -1.74
CTK1	YKL139W	SNU114	P36048	1008 aa	Known RBP	4.18	□□□□□ -1.74
CTK1	YKL139W	RFC1	P38630	861 aa	Known RBP	4.18	□□□□□ -1.74
CTK1	YKL139W	ALG5	P40350	334 aa		4.18	□□□□□ -1.74
CTK1	YKL139W	SSU1	P41930	458 aa		4.18	□□□□□ -1.74
CTK1	YKL139W	IPI3	P53877	555 aa		4.18	□□□□□ -1.74

Retrieved 100 of 5,963 RNA–protein pairs in 9.7 ms