RNA–Protein interactions for RNA: YFL003C

MSH4, Transcript of Protein involved in meiotic recombination, yeast

Gene MSH4, Length 2,637 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
MSH4	YFL003C	SKM1	Q12469	655 aa		3.19	□□□□□ -1.9
MSH4	YFL003C	YOR111W	Q99210	232 aa		3.19	□□□□□ -1.9
MSH4	YFL003C	SPO14	P36126	1683 aa		3.19	□□□□□ -1.9
MSH4	YFL003C	KES1	P35844	434 aa	Known RBP	3.19	□□□□□ -1.9
MSH4	YFL003C	NTR2	P36118	322 aa	Predicted RBP	3.19	□□□□□ -1.9
MSH4	YFL003C	VBA2	P38358	474 aa	Known RBP	3.19	□□□□□ -1.9
MSH4	YFL003C	LRP1	P38801	184 aa	Known RBP	3.19	□□□□□ -1.9
MSH4	YFL003C	MET28	P40573	187 aa		3.19	□□□□□ -1.9
MSH4	YFL003C	AXL1	P40851	1208 aa		3.19	□□□□□ -1.9
MSH4	YFL003C	GND2	P53319	492 aa		3.19	□□□□□ -1.9
MSH4	YFL003C	JJJ1	P53863	590 aa		3.19	□□□□□ -1.9
MSH4	YFL003C	YBR126W-A	Q8TGU7	68 aa		3.19	□□□□□ -1.9
MSH4	YFL003C	RPC53	P25441	422 aa		3.18	□□□□□ -1.9
MSH4	YFL003C	LOT5	P34234	306 aa		3.18	□□□□□ -1.9
MSH4	YFL003C	MAM1	P40065	302 aa		3.18	□□□□□ -1.9
MSH4	YFL003C	THI6	P41835	540 aa		3.18	□□□□□ -1.9
MSH4	YFL003C	WAR1	Q03631	944 aa		3.18	□□□□□ -1.9
MSH4	YFL003C	PLM2	Q04383	521 aa		3.18	□□□□□ -1.9
MSH4	YFL003C	TGS1	Q12052	315 aa		3.18	□□□□□ -1.9
MSH4	YFL003C	RTC1	Q08281	1341 aa		3.18	□□□□□ -1.9
MSH4	YFL003C	RPL7A	P05737	244 aa	Known RBP	3.18	□□□□□ -1.9
MSH4	YFL003C	PWP1	P21304	576 aa	Known RBP	3.18	□□□□□ -1.9
MSH4	YFL003C	SNT1	P25357	1226 aa		3.18	□□□□□ -1.9
MSH4	YFL003C	AAD3	P25612	363 aa		3.18	□□□□□ -1.9
MSH4	YFL003C	CDC60	P26637	1090 aa	Known RBP	3.18	□□□□□ -1.9
MSH4	YFL003C	AAP1	P37898	856 aa	Known RBP	3.18	□□□□□ -1.9
MSH4	YFL003C	VPS73	P53142	486 aa	Known RBP	3.18	□□□□□ -1.9
MSH4	YFL003C	ERO1	Q03103	563 aa		3.18	□□□□□ -1.9
MSH4	YFL003C	SKG3	Q06315	1026 aa		3.18	□□□□□ -1.9
MSH4	YFL003C	YDL073W	Q07454	984 aa		3.18	□□□□□ -1.9
MSH4	YFL003C	CYK3	Q07533	885 aa		3.18	□□□□□ -1.9
MSH4	YFL003C	YPL191C	Q08930	360 aa		3.18	□□□□□ -1.9
MSH4	YFL003C	RPL7B	Q12213	244 aa	Known RBP	3.18	□□□□□ -1.9
MSH4	YFL003C	YPT6	Q99260	215 aa		3.18	□□□□□ -1.9
MSH4	YFL003C	NUP170	P38181	1502 aa		3.18	□□□□□ -1.9
MSH4	YFL003C	ILS1	P09436	1072 aa	Known RBP	3.17	□□□□□ -1.9
MSH4	YFL003C	CBS1	P14066	229 aa		3.17	□□□□□ -1.9
MSH4	YFL003C	RED1	P14291	827 aa		3.17	□□□□□ -1.9
MSH4	YFL003C	DAL5	P15365	543 aa		3.17	□□□□□ -1.9
MSH4	YFL003C	VPH1	P32563	840 aa	Known RBP	3.17	□□□□□ -1.9
MSH4	YFL003C	BYE1	P36106	594 aa		3.17	□□□□□ -1.9
MSH4	YFL003C	DJP1	P40564	432 aa		3.17	□□□□□ -1.9
MSH4	YFL003C	SKP2	P42843	763 aa		3.17	□□□□□ -1.9
MSH4	YFL003C	CPR8	P53728	308 aa		3.17	□□□□□ -1.9
MSH4	YFL003C	ZDS2	P54786	942 aa		3.17	□□□□□ -1.9
MSH4	YFL003C	YAT1	P80235	687 aa		3.17	□□□□□ -1.9
MSH4	YFL003C	YMR155W	Q03795	547 aa		3.17	□□□□□ -1.9
MSH4	YFL003C	ECM22	Q05958	814 aa	Predicted RBP	3.17	□□□□□ -1.9
MSH4	YFL003C	BAG7	Q12128	409 aa		3.17	□□□□□ -1.9
MSH4	YFL003C	GET3	Q12154	354 aa	Known RBP	3.17	□□□□□ -1.9
MSH4	YFL003C	ARD1	P07347	238 aa	Predicted RBP	3.17	□□□□□ -1.9
MSH4	YFL003C	AQY1	P0CD91	305 aa		3.17	□□□□□ -1.9
MSH4	YFL003C	PDX1	P16451	410 aa		3.17	□□□□□ -1.9
MSH4	YFL003C	LAC1	P28496	418 aa		3.17	□□□□□ -1.9
MSH4	YFL003C	TIF3	P34167	436 aa	Known RBP	3.17	□□□□□ -1.9
MSH4	YFL003C	GLO1	P50107	326 aa		3.17	□□□□□ -1.9
MSH4	YFL003C	YGR016W	P53209	190 aa		3.17	□□□□□ -1.9
MSH4	YFL003C	CTF4	Q01454	927 aa		3.17	□□□□□ -1.9
MSH4	YFL003C	FCP1	Q03254	732 aa		3.17	□□□□□ -1.9
MSH4	YFL003C	RSM28	Q03430	361 aa		3.17	□□□□□ -1.9
MSH4	YFL003C	YDR109C	Q04585	715 aa		3.17	□□□□□ -1.9
MSH4	YFL003C	IRC3	Q06683	689 aa		3.17	□□□□□ -1.9
MSH4	YFL003C	PSR1	Q07800	427 aa		3.17	□□□□□ -1.9
MSH4	YFL003C	YEH1	Q07804	573 aa		3.17	□□□□□ -1.9
MSH4	YFL003C	SMC6	Q12749	1114 aa		3.17	□□□□□ -1.9
MSH4	YFL003C	RPO21	P04050	1733 aa	Known RBP	3.17	□□□□□ -1.9
MSH4	YFL003C	GCN4	P03069	281 aa		3.16	□□□□□ -1.9
MSH4	YFL003C	STE12	P13574	688 aa		3.16	□□□□□ -1.9
MSH4	YFL003C	PMS1	P14242	873 aa		3.16	□□□□□ -1.9
MSH4	YFL003C	ANP1	P32629	500 aa		3.16	□□□□□ -1.9
MSH4	YFL003C	MAL33	P38157	468 aa		3.16	□□□□□ -1.9
MSH4	YFL003C	SRP72	P38688	640 aa	Known RBP	3.16	□□□□□ -1.9
MSH4	YFL003C	RTS1	P38903	757 aa		3.16	□□□□□ -1.9
MSH4	YFL003C	PHM8	P40025	321 aa		3.16	□□□□□ -1.9
MSH4	YFL003C	YIL161W	P40449	235 aa	Known RBP	3.16	□□□□□ -1.9
MSH4	YFL003C	VMA13	P41807	478 aa	Known RBP	3.16	□□□□□ -1.9
MSH4	YFL003C	CIR1	P42940	261 aa		3.16	□□□□□ -1.9
MSH4	YFL003C	RPS10B	P46784	105 aa	Known RBP	3.16	□□□□□ -1.9
MSH4	YFL003C	BUD7	Q08754	746 aa		3.16	□□□□□ -1.9
MSH4	YFL003C	SFI1	Q12369	946 aa		3.16	□□□□□ -1.9
MSH4	YFL003C	MDM20	Q12387	796 aa	Known RBP	3.16	□□□□□ -1.9
MSH4	YFL003C	RTN2	Q12443	393 aa		3.16	□□□□□ -1.9
MSH4	YFL003C	TY1B-DR3	Q99231	1755 aa		3.16	□□□□□ -1.9
MSH4	YFL003C	TPK2	P06245	380 aa		3.16	□□□□□ -1.9
MSH4	YFL003C	TPM1	P17536	199 aa	Known RBP	3.16	□□□□□ -1.9
MSH4	YFL003C	PTC6	P25646	442 aa		3.16	□□□□□ -1.9
MSH4	YFL003C	MTG2	P38860	518 aa		3.16	□□□□□ -1.9
MSH4	YFL003C	UTP9	P38882	575 aa	Known RBP	3.16	□□□□□ -1.9
MSH4	YFL003C	CAJ1	P39101	391 aa		3.16	□□□□□ -1.9
MSH4	YFL003C	ARF3	P40994	183 aa	RIP-Chip data	3.16	□□□□□ -1.9	not detected
MSH4	YFL003C	YFR020W	P43600	232 aa		3.16	□□□□□ -1.9
MSH4	YFL003C	MSC1	Q03104	513 aa		3.16	□□□□□ -1.9
MSH4	YFL003C	NUS1	Q12063	375 aa		3.16	□□□□□ -1.9
MSH4	YFL003C	NBP2	Q12163	236 aa		3.16	□□□□□ -1.9
MSH4	YFL003C	NOP58	Q12499	511 aa	Known RBP	3.16	□□□□□ -1.9
MSH4	YFL003C	TRM3	Q07527	1436 aa		3.16	□□□□□ -1.9
MSH4	YFL003C	NUP159	P40477	1460 aa		3.15	□□□□□ -1.9
MSH4	YFL003C	NAT1	P12945	854 aa	Known RBP	3.15	□□□□□ -1.9
MSH4	YFL003C	ELO2	P25358	347 aa		3.15	□□□□□ -1.9
MSH4	YFL003C	PDB1	P32473	366 aa	Known RBP	3.15	□□□□□ -1.9

Retrieved 100 of 5,963 RNA–protein pairs in 16.7 ms