RNA–Protein interactions for RNA: YCR093W

CDC39, Transcript of Component of the CCR4-NOT1 core complex, yeastyeast

Gene CDC39, Length 6,327 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
CDC39YCR093W FLC2P39719 783 aa1.26□□□□□ -2.21
CDC39YCR093W VID27P40157 782 aa1.26□□□□□ -2.21
CDC39YCR093W ESL1P40456 1118 aa1.26□□□□□ -2.21
CDC39YCR093W GND2P53319 492 aa1.26□□□□□ -2.21
CDC39YCR093W REG1Q00816 1014 aa1.26□□□□□ -2.21
CDC39YCR093W ACS1Q01574 713 aa1.26□□□□□ -2.21
CDC39YCR093W MDM1Q01846 1127 aa1.26□□□□□ -2.21
CDC39YCR093W YMR160WQ03823 816 aa1.26□□□□□ -2.21
CDC39YCR093W GRS2Q06817 618 aa1.26□□□□□ -2.21
CDC39YCR093W TMA16Q08687 178 aa1.26□□□□□ -2.21
CDC39YCR093W LEA1Q08963 238 aaPredicted RBP1.26□□□□□ -2.21
CDC39YCR093W SEM1O94742 89 aa1.26□□□□□ -2.21
CDC39YCR093W PDE2P06776 526 aa1.26□□□□□ -2.21
CDC39YCR093W RIT1P23796 513 aa1.26□□□□□ -2.21
CDC39YCR093W ARP2P32381 391 aaKnown RBP1.26□□□□□ -2.21
CDC39YCR093W SRB5P32585 307 aa1.26□□□□□ -2.21
CDC39YCR093W BEM3P32873 1128 aa1.26□□□□□ -2.21
CDC39YCR093W KSP1P38691 1029 aaKnown RBP1.26□□□□□ -2.21
CDC39YCR093W GET2P40056 285 aa1.26□□□□□ -2.21
CDC39YCR093W PKP1P40530 394 aa1.26□□□□□ -2.21
CDC39YCR093W LYS14P40971 790 aa1.26□□□□□ -2.21
CDC39YCR093W CWC22P53333 577 aaKnown RBP1.26□□□□□ -2.21
CDC39YCR093W CPR8P53728 308 aa1.26□□□□□ -2.21
CDC39YCR093W DSL1P53847 754 aa1.26□□□□□ -2.21
CDC39YCR093W EOS1P53938 366 aa1.26□□□□□ -2.21
CDC39YCR093W UBP16Q02863 499 aa1.26□□□□□ -2.21
CDC39YCR093W SYF1Q04048 859 aaPredicted RBP1.26□□□□□ -2.21
CDC39YCR093W CRN1Q06440 651 aa1.26□□□□□ -2.21
CDC39YCR093W MCH4Q08268 501 aa1.26□□□□□ -2.21
CDC39YCR093W BUG1Q12191 341 aa1.26□□□□□ -2.21
CDC39YCR093W COX17Q12287 69 aa1.26□□□□□ -2.21
CDC39YCR093W TAF3Q12297 353 aa1.26□□□□□ -2.21
CDC39YCR093W CET1O13297 549 aaPredicted RBP1.26□□□□□ -2.21
CDC39YCR093W YPK1P12688 680 aaKnown RBP1.26□□□□□ -2.21
CDC39YCR093W THR1P17423 357 aaKnown RBP1.26□□□□□ -2.21
CDC39YCR093W CRG1P38892 291 aaRIP-Chip data1.26□□□□□ -2.21not detected
CDC39YCR093W ECM10P39987 644 aa1.26□□□□□ -2.21
CDC39YCR093W BPL1P48445 690 aaPredicted RBP1.26□□□□□ -2.21
CDC39YCR093W BOP3P53958 396 aa1.26□□□□□ -2.21
CDC39YCR093W EFR3Q03653 782 aaKnown RBP1.26□□□□□ -2.21
CDC39YCR093W YML133CQ03099 1374 aa1.26□□□□□ -2.21
CDC39YCR093W YLL067CQ07888 1374 aa1.26□□□□□ -2.21
CDC39YCR093W YLL066CQ99208 1374 aa1.26□□□□□ -2.21
CDC39YCR093W GPH1P06738 902 aaKnown RBP1.26□□□□□ -2.21
CDC39YCR093W YCR061WP25639 631 aa1.26□□□□□ -2.21
CDC39YCR093W PTC6P25646 442 aa1.26□□□□□ -2.21
CDC39YCR093W YKL100CP34248 587 aa1.26□□□□□ -2.21
CDC39YCR093W MOH1P38191 138 aa1.26□□□□□ -2.21
CDC39YCR093W CST26P38226 397 aa1.26□□□□□ -2.21
CDC39YCR093W RPN11P43588 306 aaKnown RBP1.26□□□□□ -2.21
CDC39YCR093W ADE16P54113 591 aaKnown RBP1.26□□□□□ -2.21
CDC39YCR093W ECM22Q05958 814 aaPredicted RBP1.26□□□□□ -2.21
CDC39YCR093W ARP6Q12509 438 aa1.26□□□□□ -2.21
CDC39YCR093W YBT1P32386 1661 aa1.26□□□□□ -2.21
CDC39YCR093W ADE3P07245 946 aaKnown RBP1.26□□□□□ -2.21
CDC39YCR093W SPO7P18410 259 aa1.26□□□□□ -2.21
CDC39YCR093W ERG3P32353 365 aa1.26□□□□□ -2.21
CDC39YCR093W ALY1P36117 915 aa1.26□□□□□ -2.21
CDC39YCR093W ROT2P38138 954 aa1.26□□□□□ -2.21
CDC39YCR093W TIF5P38431 405 aaKnown RBP1.26□□□□□ -2.21
CDC39YCR093W STT3P39007 718 aaKnown RBP1.26□□□□□ -2.21
CDC39YCR093W RTS2P40962 232 aa1.26□□□□□ -2.21
CDC39YCR093W SGM1P47166 707 aa1.26□□□□□ -2.21
CDC39YCR093W LEE1Q02799 301 aaKnown RBP1.26□□□□□ -2.21
CDC39YCR093W HOT1Q03213 719 aa1.26□□□□□ -2.21
CDC39YCR093W VID22Q05934 901 aa1.26□□□□□ -2.21
CDC39YCR093W SSK1Q07084 712 aa1.26□□□□□ -2.21
CDC39YCR093W AEP3Q12089 606 aa1.26□□□□□ -2.21
CDC39YCR093W AVL9Q12500 764 aa1.26□□□□□ -2.21
CDC39YCR093W Q0142Q9ZZW4 58 aa1.26□□□□□ -2.21
CDC39YCR093W RHO2P06781 192 aa1.25□□□□□ -2.21
CDC39YCR093W STE12P13574 688 aa1.25□□□□□ -2.21
CDC39YCR093W CDC26P14724 124 aa1.25□□□□□ -2.21
CDC39YCR093W GSH1P32477 678 aa1.25□□□□□ -2.21
CDC39YCR093W PPZ2P33329 710 aa1.25□□□□□ -2.21
CDC39YCR093W OCT1P35999 772 aa1.25□□□□□ -2.21
CDC39YCR093W ERT1P38140 529 aa1.25□□□□□ -2.21
CDC39YCR093W CFD1P40558 293 aa1.25□□□□□ -2.21
CDC39YCR093W PSA1P41940 361 aaKnown RBP1.25□□□□□ -2.21
CDC39YCR093W IRC8P47046 822 aa1.25□□□□□ -2.21
CDC39YCR093W EFM6P53970 246 aa1.25□□□□□ -2.21
CDC39YCR093W CFT2Q12102 859 aaPredicted RBP1.25□□□□□ -2.21
CDC39YCR093W INP53Q12271 1107 aa1.25□□□□□ -2.21
CDC39YCR093W RPL7AP05737 244 aaKnown RBP1.25□□□□□ -2.21
CDC39YCR093W BOS1P25385 244 aa1.25□□□□□ -2.21
CDC39YCR093W VPS17P32913 551 aa1.25□□□□□ -2.21
CDC39YCR093W NTR2P36118 322 aaPredicted RBP1.25□□□□□ -2.21
CDC39YCR093W VID24P38263 362 aa1.25□□□□□ -2.21
CDC39YCR093W BZZ1P38822 633 aa1.25□□□□□ -2.21
CDC39YCR093W PMC1P38929 1173 aaPredicted RBP1.25□□□□□ -2.21
CDC39YCR093W SLZ1P40167 298 aa1.25□□□□□ -2.21
CDC39YCR093W BUD27P43573 796 aaKnown RBP RIP-Chip data1.25□□□□□ -2.21not detected
CDC39YCR093W VTC2P43585 828 aa1.25□□□□□ -2.21
CDC39YCR093W YGR126WP53274 230 aa1.25□□□□□ -2.21
CDC39YCR093W YNR061CP53747 219 aa1.25□□□□□ -2.21
CDC39YCR093W ECM30Q06673 1274 aa1.25□□□□□ -2.21
CDC39YCR093W IMH1Q06704 911 aaKnown RBP1.25□□□□□ -2.21
CDC39YCR093W BUD21Q08492 214 aaPredicted RBP1.25□□□□□ -2.21
CDC39YCR093W RDR1Q08904 546 aa1.25□□□□□ -2.21
CDC39YCR093W RPL7BQ12213 244 aaKnown RBP1.25□□□□□ -2.21
Retrieved 100 of 5,963 RNA–protein pairs in 51 ms