RNA–Protein interactions for RNA: YBL067C

UBP13, Transcript of Ubiquitin-specific protease that cleaves Ub-protein fusions, yeast

Gene UBP13, Length 2,244 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
UBP13	YBL067C	CSI1	Q04368	295 aa		7.12	□□□□□ -1.27
UBP13	YBL067C	ASM4	Q05166	528 aa		7.12	□□□□□ -1.27
UBP13	YBL067C	CRD1	Q07560	283 aa		7.12	□□□□□ -1.27
UBP13	YBL067C	LDB19	Q12502	818 aa		7.12	□□□□□ -1.27
UBP13	YBL067C	YJR112W-A	Q3E743	109 aa		7.12	□□□□□ -1.27
UBP13	YBL067C	GEX1	P25596	615 aa		7.11	□□□□□ -1.27
UBP13	YBL067C	ARO4	P32449	370 aa	Known RBP	7.11	□□□□□ -1.27
UBP13	YBL067C	SUA5	P32579	426 aa		7.11	□□□□□ -1.27
UBP13	YBL067C	YKR015C	P36111	568 aa		7.11	□□□□□ -1.27
UBP13	YBL067C	REG2	P38232	338 aa		7.11	□□□□□ -1.27
UBP13	YBL067C	MRK1	P50873	501 aa		7.11	□□□□□ -1.27
UBP13	YBL067C	YGR067C	P53243	804 aa		7.11	□□□□□ -1.27
UBP13	YBL067C	MPP6	P53725	186 aa	Predicted RBP	7.11	□□□□□ -1.27
UBP13	YBL067C	TMA16	Q08687	178 aa		7.11	□□□□□ -1.27
UBP13	YBL067C	NDJ1	Q12366	352 aa		7.11	□□□□□ -1.27
UBP13	YBL067C	UBA1	P22515	1024 aa	Known RBP	7.11	□□□□□ -1.27
UBP13	YBL067C	HXT3	P32466	567 aa	Known RBP	7.11	□□□□□ -1.27
UBP13	YBL067C	ALG14	P38242	237 aa		7.11	□□□□□ -1.27
UBP13	YBL067C	SLM4	P38247	162 aa		7.11	□□□□□ -1.27
UBP13	YBL067C	SMF2	P38778	549 aa		7.11	□□□□□ -1.27
UBP13	YBL067C	SSO2	P39926	295 aa		7.11	□□□□□ -1.27
UBP13	YBL067C	CAB2	P40506	365 aa		7.11	□□□□□ -1.27
UBP13	YBL067C	IST3	P40565	148 aa	Predicted RBP	7.11	□□□□□ -1.27
UBP13	YBL067C	RPM2	Q02773	1202 aa		7.11	□□□□□ -1.27
UBP13	YBL067C	PPM1	Q04081	328 aa		7.11	□□□□□ -1.27
UBP13	YBL067C	RQC1	Q05468	723 aa	Known RBP	7.11	□□□□□ -1.27
UBP13	YBL067C	BCP1	Q06338	283 aa		7.11	□□□□□ -1.27
UBP13	YBL067C	NTO1	Q12311	748 aa		7.11	□□□□□ -1.27
UBP13	YBL067C	SRN2	Q99176	213 aa		7.11	□□□□□ -1.27
UBP13	YBL067C	RPP2B	P02400	110 aa	Known RBP	7.1	□□□□□ -1.27
UBP13	YBL067C	CDS1	P38221	457 aa		7.1	□□□□□ -1.27
UBP13	YBL067C	PFF1	P38244	976 aa		7.1	□□□□□ -1.27
UBP13	YBL067C	TMN3	P40071	706 aa		7.1	□□□□□ -1.27
UBP13	YBL067C	SHQ1	P40486	507 aa	Predicted RBP	7.1	□□□□□ -1.27
UBP13	YBL067C	FET4	P40988	552 aa		7.1	□□□□□ -1.27
UBP13	YBL067C	YGL036W	P53185	909 aa	Predicted RBP	7.1	□□□□□ -1.27
UBP13	YBL067C	YGR117C	P53270	476 aa		7.1	□□□□□ -1.27
UBP13	YBL067C	YLR173W	Q06247	608 aa		7.1	□□□□□ -1.27
UBP13	YBL067C	SOG2	Q08817	791 aa		7.1	□□□□□ -1.27
UBP13	YBL067C	ATG29	Q12092	213 aa		7.1	□□□□□ -1.27
UBP13	YBL067C	UPC2	Q12151	913 aa		7.1	□□□□□ -1.27
UBP13	YBL067C	NBP2	Q12163	236 aa		7.1	□□□□□ -1.27
UBP13	YBL067C	GCD2	P12754	651 aa	Predicted RBP	7.09	□□□□□ -1.27
UBP13	YBL067C	SRV2	P17555	526 aa	Known RBP	7.09	□□□□□ -1.27
UBP13	YBL067C	SEC62	P21825	274 aa		7.09	□□□□□ -1.27
UBP13	YBL067C	BOS1	P25385	244 aa		7.09	□□□□□ -1.27
UBP13	YBL067C	YCL068C	P25593	260 aa		7.09	□□□□□ -1.27
UBP13	YBL067C	YPT7	P32939	208 aa		7.09	□□□□□ -1.27
UBP13	YBL067C	AUR1	P36107	401 aa	Predicted RBP	7.09	□□□□□ -1.27
UBP13	YBL067C	QNS1	P38795	714 aa	Known RBP	7.09	□□□□□ -1.27
UBP13	YBL067C	GSM1	P42950	618 aa		7.09	□□□□□ -1.27
UBP13	YBL067C	PGA2	P53903	129 aa		7.09	□□□□□ -1.27
UBP13	YBL067C	KAP120	Q02932	1032 aa		7.09	□□□□□ -1.27
UBP13	YBL067C	RLI1	Q03195	608 aa	Known RBP	7.09	□□□□□ -1.27
UBP13	YBL067C	YPL260W	Q08977	551 aa		7.09	□□□□□ -1.27
UBP13	YBL067C	CFT1	Q06632	1357 aa	Known RBP	7.09	□□□□□ -1.27
UBP13	YBL067C	PRE8	P23639	250 aa		7.09	□□□□□ -1.27
UBP13	YBL067C	RPD3	P32561	433 aa		7.09	□□□□□ -1.27
UBP13	YBL067C	PGM1	P33401	570 aa	Known RBP	7.09	□□□□□ -1.27
UBP13	YBL067C	MIP6	P38760	659 aa	Known RBP	7.09	□□□□□ -1.27
UBP13	YBL067C	SHR5	P41912	237 aa		7.09	□□□□□ -1.27
UBP13	YBL067C	TFB5	Q3E7C1	72 aa	Predicted RBP	7.09	□□□□□ -1.27
UBP13	YBL067C	RAD61	Q99359	647 aa		7.09	□□□□□ -1.27
UBP13	YBL067C	DFR1	P07807	211 aa	Known RBP RIP-Chip data	7.08	□□□□□ -1.28	not detected
UBP13	YBL067C	ICL1	P28240	557 aa	Predicted RBP	7.08	□□□□□ -1.28
UBP13	YBL067C	RML2	P32611	393 aa		7.08	□□□□□ -1.28
UBP13	YBL067C	ATP3	P38077	311 aa	Known RBP	7.08	□□□□□ -1.28
UBP13	YBL067C	YER085C	P40058	173 aa		7.08	□□□□□ -1.28
UBP13	YBL067C	FTR1	P40088	404 aa		7.08	□□□□□ -1.28
UBP13	YBL067C	ENP2	P48234	707 aa	Known RBP	7.08	□□□□□ -1.28
UBP13	YBL067C	TOM22	P49334	152 aa		7.08	□□□□□ -1.28
UBP13	YBL067C	RRP46	P53256	223 aa	Predicted RBP	7.08	□□□□□ -1.28
UBP13	YBL067C	CLU1	Q03690	1277 aa	Known RBP	7.08	□□□□□ -1.28
UBP13	YBL067C	FUS2	Q05670	677 aa		7.08	□□□□□ -1.28
UBP13	YBL067C	WSC3	Q12215	556 aa		7.08	□□□□□ -1.28
UBP13	YBL067C	CHL1	P22516	861 aa	Predicted RBP	7.08	□□□□□ -1.28
UBP13	YBL067C	ARL1	P38116	183 aa	Known RBP	7.08	□□□□□ -1.28
UBP13	YBL067C	MAL33	P38157	468 aa		7.08	□□□□□ -1.28
UBP13	YBL067C	YRB2	P40517	327 aa		7.08	□□□□□ -1.28
UBP13	YBL067C	ULP2	P40537	1034 aa	Predicted RBP	7.08	□□□□□ -1.28
UBP13	YBL067C	MAF1	P41910	395 aa		7.08	□□□□□ -1.28
UBP13	YBL067C	BRE2	P43132	505 aa		7.08	□□□□□ -1.28
UBP13	YBL067C	PRP31	P49704	494 aa	Predicted RBP	7.08	□□□□□ -1.28
UBP13	YBL067C	RTT102	P53330	157 aa		7.08	□□□□□ -1.28
UBP13	YBL067C	BRX1	Q08235	291 aa	Known RBP	7.08	□□□□□ -1.28
UBP13	YBL067C	ALG6	Q12001	544 aa	Known RBP	7.08	□□□□□ -1.28
UBP13	YBL067C	YLL058W	Q12198	575 aa		7.08	□□□□□ -1.28
UBP13	YBL067C	CBP1	P07252	654 aa		7.07	□□□□□ -1.28
UBP13	YBL067C	CDC15	P27636	974 aa		7.07	□□□□□ -1.28
UBP13	YBL067C	SEC61	P32915	480 aa		7.07	□□□□□ -1.28
UBP13	YBL067C	ERC1	P38767	581 aa		7.07	□□□□□ -1.28
UBP13	YBL067C	PRM9	P39551	298 aa		7.07	□□□□□ -1.28
UBP13	YBL067C	CRN1	Q06440	651 aa		7.07	□□□□□ -1.28
UBP13	YBL067C	AIM6	Q07716	390 aa		7.07	□□□□□ -1.28
UBP13	YBL067C	YOL107W	Q12239	342 aa		7.07	□□□□□ -1.28
UBP13	YBL067C	BRR1	Q99177	341 aa	Predicted RBP	7.07	□□□□□ -1.28
UBP13	YBL067C	SDH2	P21801	266 aa		7.07	□□□□□ -1.28
UBP13	YBL067C	WBP1	P33767	430 aa	Known RBP	7.07	□□□□□ -1.28
UBP13	YBL067C	MIA40	P36046	403 aa		7.07	□□□□□ -1.28
UBP13	YBL067C	YHR182W	P38870	785 aa		7.07	□□□□□ -1.28

Retrieved 100 of 5,963 RNA–protein pairs in 44 ms