RNA–Protein interactions for RNA: ENST00000611712.4

LIG4-204, Transcript of DNA ligase 4, humanhuman

APPRIS P1 TSL 4 BASIC

Gene LIG4, Length 4,180 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG4-204ENST00000611712 H7C1D1 291 aa9.74□□□□□ -0.85
LIG4-204ENST00000611712 SEC31AO94979 1220 aaKnown RBP9.74□□□□□ -0.85
LIG4-204ENST00000611712 TRAPPC10P48553 1259 aa9.74□□□□□ -0.85
LIG4-204ENST00000611712 MECOMQ03112 1051 aa9.74□□□□□ -0.85
LIG4-204ENST00000611712 SEPT11Q9NVA2 429 aaKnown RBP9.74□□□□□ -0.85
LIG4-204ENST00000611712 FBXO2Q9UK22 296 aaPredicted RBP9.74□□□□□ -0.85
LIG4-204ENST00000611712 TCHHQ07283 1943 aa9.74□□□□□ -0.85
LIG4-204ENST00000611712 SMCO2A6NFE2 343 aa9.74□□□□□ -0.85
LIG4-204ENST00000611712 KLRF2D3W0D1 207 aa9.74□□□□□ -0.85
LIG4-204ENST00000611712 RIMBP2O15034 1052 aa9.74□□□□□ -0.85
LIG4-204ENST00000611712 USP17L8P0C7I0 530 aa9.74□□□□□ -0.85
LIG4-204ENST00000611712 LONP1P36776 959 aaKnown RBP9.74□□□□□ -0.85
LIG4-204ENST00000611712 ARID5AQ03989 594 aa9.74□□□□□ -0.85
LIG4-204ENST00000611712 USP49Q70CQ1 688 aa9.74□□□□□ -0.85
LIG4-204ENST00000611712 LRP10Q7Z4F1 713 aa9.74□□□□□ -0.85
LIG4-204ENST00000611712 ZNF34Q8IZ26 560 aa9.74□□□□□ -0.85
LIG4-204ENST00000611712 ZFP91Q96JP5 570 aaPredicted RBP9.74□□□□□ -0.85
LIG4-204ENST00000611712 FAM205CA6NFA0 338 aa9.74□□□□□ -0.85
LIG4-204ENST00000611712 GOLGA6L10A6NI86 522 aa9.74□□□□□ -0.85
LIG4-204ENST00000611712 NMT2O60551 498 aa9.74□□□□□ -0.85
LIG4-204ENST00000611712 TUBBP07437 444 aa9.74□□□□□ -0.85
LIG4-204ENST00000611712 CAPN2P17655 700 aa9.74□□□□□ -0.85
LIG4-204ENST00000611712 OAS2P29728 719 aaKnown RBP9.74□□□□□ -0.85
LIG4-204ENST00000611712 SMC1AQ14683 1233 aaKnown RBP9.74□□□□□ -0.85
LIG4-204ENST00000611712 CNNM4Q6P4Q7 775 aa9.74□□□□□ -0.85
LIG4-204ENST00000611712 TOGARAM2Q6ZUX3 1019 aa9.74□□□□□ -0.85
LIG4-204ENST00000611712 TMTC3Q6ZXV5 915 aa9.74□□□□□ -0.85
LIG4-204ENST00000611712 DYMQ7RTS9 669 aa9.74□□□□□ -0.85
LIG4-204ENST00000611712 EYA3Q99504 573 aa9.74□□□□□ -0.85
LIG4-204ENST00000611712 MTA3Q9BTC8 594 aa9.74□□□□□ -0.85
LIG4-204ENST00000611712 BSDC1Q9NW68 430 aaPredicted RBP9.74□□□□□ -0.85
LIG4-204ENST00000611712 LRWD1Q9UFC0 647 aa9.74□□□□□ -0.85
LIG4-204ENST00000611712 PNPLA7Q6ZV29 1317 aa9.74□□□□□ -0.85
LIG4-204ENST00000611712 SALL1Q9NSC2 1324 aa9.74□□□□□ -0.85
LIG4-204ENST00000611712 NFAT5O94916 1531 aa9.73□□□□□ -0.85
LIG4-204ENST00000611712 LMTK3Q96Q04 1460 aa9.73□□□□□ -0.85
LIG4-204ENST00000611712 SEMA3EO15041 775 aa9.73□□□□□ -0.85
LIG4-204ENST00000611712 JAKMIP2Q96AA8 810 aa9.73□□□□□ -0.85
LIG4-204ENST00000611712 BRIP1Q9BX63 1249 aa9.73□□□□□ -0.85
LIG4-204ENST00000611712 RGPD8O14715 1765 aaPredicted RBP9.73□□□□□ -0.85
LIG4-204ENST00000611712 NWD1Q149M9 1564 aa9.73□□□□□ -0.85
LIG4-204ENST00000611712 CYP2D6P10635 497 aa9.73□□□□□ -0.85
LIG4-204ENST00000611712 PRDX5P30044 214 aa9.73□□□□□ -0.85
LIG4-204ENST00000611712 NOP2P46087 812 aaKnown RBP9.73□□□□□ -0.85
LIG4-204ENST00000611712 GRIN1Q05586 938 aa9.73□□□□□ -0.85
LIG4-204ENST00000611712 PTPAQ15257 358 aa9.73□□□□□ -0.85
LIG4-204ENST00000611712 NYAP1Q6ZVC0 841 aa9.73□□□□□ -0.85
LIG4-204ENST00000611712 NEK11Q8NG66 645 aa9.73□□□□□ -0.85
LIG4-204ENST00000611712 ZNF219Q9P2Y4 722 aaPredicted RBP9.73□□□□□ -0.85
LIG4-204ENST00000611712 MINPP1Q9UNW1 487 aa9.73□□□□□ -0.85
LIG4-204ENST00000611712 TECP42680 631 aa9.73□□□□□ -0.85
LIG4-204ENST00000611712 FMR1Q06787 632 aaKnown RBP eCLIP9.73□□□□□ -0.85
LIG4-204ENST00000611712 REXO1Q8N1G1 1221 aaKnown RBP9.73□□□□□ -0.85
LIG4-204ENST00000611712 SLC35F6Q8N357 371 aa9.73□□□□□ -0.85
LIG4-204ENST00000611712 FBXL16Q8N461 479 aa9.73□□□□□ -0.85
LIG4-204ENST00000611712 RABGGTAQ92696 567 aa9.73□□□□□ -0.85
LIG4-204ENST00000611712 DYNLL2Q96FJ2 89 aa9.73□□□□□ -0.85
LIG4-204ENST00000611712 SPAG5Q96R06 1193 aa9.73□□□□□ -0.85
LIG4-204ENST00000611712 LZTS2Q9BRK4 669 aa9.73□□□□□ -0.85
LIG4-204ENST00000611712 ZC3H12CQ9C0D7 883 aaKnown RBP9.73□□□□□ -0.85
LIG4-204ENST00000611712 BIN2Q9UBW5 565 aaPredicted RBP9.73□□□□□ -0.85
LIG4-204ENST00000611712 MST1RQ04912 1400 aa9.72□□□□□ -0.85
LIG4-204ENST00000611712 TRAF5O00463 557 aa9.72□□□□□ -0.85
LIG4-204ENST00000611712 TEX33O43247 280 aa9.72□□□□□ -0.85
LIG4-204ENST00000611712 PPP1R2P41236 205 aa9.72□□□□□ -0.85
LIG4-204ENST00000611712 RCAN1P53805 252 aa9.72□□□□□ -0.85
LIG4-204ENST00000611712 CT47A1Q5JQC4 288 aaPredicted RBP9.72□□□□□ -0.85
LIG4-204ENST00000611712 ACRBPQ8NEB7 543 aa9.72□□□□□ -0.85
LIG4-204ENST00000611712 CELF1Q92879 486 aaKnown RBP9.72□□□□□ -0.85
LIG4-204ENST00000611712 NUP58Q9BVL2 599 aa9.72□□□□□ -0.85
LIG4-204ENST00000611712 CDC23Q9UJX2 597 aa9.72□□□□□ -0.85
LIG4-204ENST00000611712 EPN1Q9Y6I3 576 aaPredicted RBP9.72□□□□□ -0.85
LIG4-204ENST00000611712 H0YHG0 523 aa9.72□□□□□ -0.85
LIG4-204ENST00000611712 PPP1R12BO60237 982 aaPredicted RBP9.72□□□□□ -0.85
LIG4-204ENST00000611712 CDR1P51861 262 aa9.72□□□□□ -0.85
LIG4-204ENST00000611712 UTP14CQ5TAP6 766 aaKnown RBP9.72□□□□□ -0.85
LIG4-204ENST00000611712 VPS36Q86VN1 386 aa9.72□□□□□ -0.85
LIG4-204ENST00000611712 UIMC1Q96RL1 719 aa9.72□□□□□ -0.85
LIG4-204ENST00000611712 GGA1Q9UJY5 639 aa9.72□□□□□ -0.85
LIG4-204ENST00000611712 PCDHA4Q9UN74 947 aa9.72□□□□□ -0.85
LIG4-204ENST00000611712 SNX29Q8TEQ0 813 aa9.72□□□□□ -0.85
LIG4-204ENST00000611712 PANX2Q96RD6 677 aa9.72□□□□□ -0.85
LIG4-204ENST00000611712 FMN2Q9NZ56 1722 aa9.72□□□□□ -0.85
LIG4-204ENST00000611712 OR52Z1P0C646 297 aa9.71□□□□□ -0.85
LIG4-204ENST00000611712 DNM2P50570 870 aa9.71□□□□□ -0.85
LIG4-204ENST00000611712 BRD3Q15059 726 aa9.71□□□□□ -0.85
LIG4-204ENST00000611712 ZNF658Q5TYW1 1059 aaPredicted RBP9.71□□□□□ -0.85
LIG4-204ENST00000611712 SRGAP1Q7Z6B7 1085 aa9.71□□□□□ -0.85
LIG4-204ENST00000611712 FAM207AQ9NSI2 230 aaPredicted RBP9.71□□□□□ -0.85
LIG4-204ENST00000611712 FAM208AQ9UK61 1670 aaKnown RBP9.71□□□□□ -0.85
LIG4-204ENST00000611712 TMCO5BA8MYB1 307 aa9.71□□□□□ -0.85
LIG4-204ENST00000611712 MRPL12P52815 198 aaKnown RBP9.71□□□□□ -0.85
LIG4-204ENST00000611712 CUL4BQ13620 913 aa9.71□□□□□ -0.85
LIG4-204ENST00000611712 HLTFQ14527 1009 aaKnown RBP eCLIP9.71□□□□□ -0.85
LIG4-204ENST00000611712 KRT31Q15323 416 aa9.71□□□□□ -0.85
LIG4-204ENST00000611712 DIXDC1Q155Q3 683 aa9.71□□□□□ -0.85
LIG4-204ENST00000611712 CALCRLQ16602 461 aa9.71□□□□□ -0.85
LIG4-204ENST00000611712 SRP68Q9UHB9 627 aaKnown RBP9.71□□□□□ -0.85
LIG4-204ENST00000611712 GDAQ9Y2T3 454 aa9.71□□□□□ -0.85
LIG4-204ENST00000611712 USP17L3A6NCW0 530 aa9.71□□□□□ -0.86
Retrieved 100 of 20,778 RNA–protein pairs in 16.3 ms