RNA–Protein interactions for RNA: ENST00000611712.4

LIG4-204, Transcript of DNA ligase 4, humanhuman

APPRIS P1 TSL 4 BASIC

Gene LIG4, Length 4,180 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG4-204ENST00000611712 NISCHQ9Y2I1 1504 aa16.54■□□□□ 0.24
LIG4-204ENST00000611712 DCAF8L2P0C7V8 631 aa15.09■□□□□ 0.01
LIG4-204ENST00000611712 SHROOM4Q9ULL8 1493 aa14.95□□□□□ -0.02
LIG4-204ENST00000611712 SUPT5HO00267 1087 aaKnown RBP14.91□□□□□ -0.02
LIG4-204ENST00000611712 PCGF6Q9BYE7 350 aa14.04□□□□□ -0.16
LIG4-204ENST00000611712 CHIC1Q5VXU3 224 aa14□□□□□ -0.17
LIG4-204ENST00000611712 EHMT2Q96KQ7 1210 aa13.98□□□□□ -0.17
LIG4-204ENST00000611712 FAM9AQ8IZU1 332 aaPredicted RBP13.9□□□□□ -0.18
LIG4-204ENST00000611712 ZCCHC6Q5VYS8 1495 aaKnown RBP13.87□□□□□ -0.19
LIG4-204ENST00000611712 TRIM41Q8WV44 630 aa13.82□□□□□ -0.2
LIG4-204ENST00000611712 LOC105371045A0A1W2PR82 267 aa13.78□□□□□ -0.2
LIG4-204ENST00000611712 HRCP23327 699 aa13.74□□□□□ -0.21
LIG4-204ENST00000611712 CCDC180Q9P1Z9 1646 aa13.72□□□□□ -0.21
LIG4-204ENST00000611712 TRIM26Q12899 539 aaPredicted RBP13.6□□□□□ -0.23
LIG4-204ENST00000611712 TTBK1Q5TCY1 1321 aaPredicted RBP13.52□□□□□ -0.24
LIG4-204ENST00000611712 PPARGC1BQ86YN6 1023 aaKnown RBP13.52□□□□□ -0.25
LIG4-204ENST00000611712 ZEB1P37275 1124 aaPredicted RBP13.51□□□□□ -0.25
LIG4-204ENST00000611712 MYO15BQ96JP2 1530 aa13.47□□□□□ -0.25
LIG4-204ENST00000611712 ABCC9O60706 1549 aa13.47□□□□□ -0.25
LIG4-204ENST00000611712 CCER1Q8TC90 406 aaPredicted RBP13.39□□□□□ -0.27
LIG4-204ENST00000611712 UBTFP17480 764 aaKnown RBP13.36□□□□□ -0.27
LIG4-204ENST00000611712 SCRIBQ14160 1630 aa13.35□□□□□ -0.27
LIG4-204ENST00000611712 APLP2Q06481 763 aa13.34□□□□□ -0.27
LIG4-204ENST00000611712 DCAF1Q9Y4B6 1507 aa13.3□□□□□ -0.28
LIG4-204ENST00000611712 RANGAP1P46060 587 aaPredicted RBP13.28□□□□□ -0.28
LIG4-204ENST00000611712 RSF1Q96T23 1441 aaPredicted RBP13.23□□□□□ -0.29
LIG4-204ENST00000611712 PABPN1Q86U42 306 aaKnown RBP eCLIP13.16□□□□□ -0.3
LIG4-204ENST00000611712 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP13.15□□□□□ -0.3
LIG4-204ENST00000611712 CENPBP07199 599 aaPredicted RBP13.08□□□□□ -0.32
LIG4-204ENST00000611712 HNRNPUL2Q1KMD3 747 aaKnown RBP13.02□□□□□ -0.33
LIG4-204ENST00000611712 CECR2Q9BXF3 1484 aa13□□□□□ -0.33
LIG4-204ENST00000611712 NACADO15069 1562 aa12.99□□□□□ -0.33
LIG4-204ENST00000611712 CSRNP3Q8WYN3 585 aa12.98□□□□□ -0.33
LIG4-204ENST00000611712 RB1CC1Q8TDY2 1594 aa12.97□□□□□ -0.33
LIG4-204ENST00000611712 YTHDC1Q96MU7 727 aaKnown RBP12.95□□□□□ -0.34
LIG4-204ENST00000611712 DIEXFQ68CQ4 756 aaKnown RBP12.92□□□□□ -0.34
LIG4-204ENST00000611712 ATP1B4Q9UN42 357 aaPredicted RBP12.91□□□□□ -0.34
LIG4-204ENST00000611712 PELP1Q8IZL8 1130 aaKnown RBP12.88□□□□□ -0.35
LIG4-204ENST00000611712 MROH2BQ7Z745 1585 aa12.88□□□□□ -0.35
LIG4-204ENST00000611712 ITGAEP38570 1179 aa12.84□□□□□ -0.35
LIG4-204ENST00000611712 BAZ1AQ9NRL2 1556 aaPredicted RBP12.8□□□□□ -0.36
LIG4-204ENST00000611712 CEP162Q5TB80 1403 aa12.74□□□□□ -0.37
LIG4-204ENST00000611712 ZNF316A6NFI3 1004 aaPredicted RBP12.73□□□□□ -0.37
LIG4-204ENST00000611712 WIZO95785 1651 aa12.73□□□□□ -0.37
LIG4-204ENST00000611712 EEA1Q15075 1411 aa12.69□□□□□ -0.38
LIG4-204ENST00000611712 ACIN1Q9UKV3 1341 aaKnown RBP12.69□□□□□ -0.38
LIG4-204ENST00000611712 GTF3C3Q9Y5Q9 886 aa12.69□□□□□ -0.38
LIG4-204ENST00000611712 TNIKQ9UKE5 1360 aa12.68□□□□□ -0.38
LIG4-204ENST00000611712 SOGA1O94964 1423 aa12.68□□□□□ -0.38
LIG4-204ENST00000611712 CCDC88BA6NC98 1476 aa12.67□□□□□ -0.38
LIG4-204ENST00000611712 WRNQ14191 1432 aaPredicted RBP eCLIP12.67□□□□□ -0.38
LIG4-204ENST00000611712 ABCC8Q09428 1581 aa12.66□□□□□ -0.38
LIG4-204ENST00000611712 GOLGA3Q08378 1498 aa12.64□□□□□ -0.39
LIG4-204ENST00000611712 CLIP1P30622 1438 aa12.63□□□□□ -0.39
LIG4-204ENST00000611712 SCAF1Q9H7N4 1312 aaKnown RBP12.62□□□□□ -0.39
LIG4-204ENST00000611712 NEUROD1Q13562 356 aa12.59□□□□□ -0.39
LIG4-204ENST00000611712 FAM50AQ14320 339 aaKnown RBP12.59□□□□□ -0.39
LIG4-204ENST00000611712 TOP2AP11388 1531 aaKnown RBP12.58□□□□□ -0.4
LIG4-204ENST00000611712 BAZ1BQ9UIG0 1483 aaKnown RBP12.56□□□□□ -0.4
LIG4-204ENST00000611712 CEP164Q9UPV0 1460 aa12.54□□□□□ -0.4
LIG4-204ENST00000611712 P3H3Q8IVL6 736 aa12.53□□□□□ -0.4
LIG4-204ENST00000611712 SMARCA4P51532 1647 aa12.5□□□□□ -0.41
LIG4-204ENST00000611712 NEFLP07196 543 aa12.48□□□□□ -0.41
LIG4-204ENST00000611712 RUSC2Q8N2Y8 1516 aa12.47□□□□□ -0.41
LIG4-204ENST00000611712 MIER1Q8N108 512 aa12.47□□□□□ -0.41
LIG4-204ENST00000611712 SMARCA2P51531 1590 aa12.43□□□□□ -0.42
LIG4-204ENST00000611712 VPS8Q8N3P4 1428 aa12.4□□□□□ -0.42
LIG4-204ENST00000611712 KIF27Q86VH2 1401 aa12.39□□□□□ -0.43
LIG4-204ENST00000611712 ATAD2BQ9ULI0 1458 aa12.36□□□□□ -0.43
LIG4-204ENST00000611712 MYT1Q01538 1121 aa12.34□□□□□ -0.43
LIG4-204ENST00000611712 TRIM52Q96A61 297 aa12.34□□□□□ -0.43
LIG4-204ENST00000611712 RAPGEF2Q9Y4G8 1499 aa12.32□□□□□ -0.44
LIG4-204ENST00000611712 KANK4Q5T7N3 995 aaPredicted RBP12.32□□□□□ -0.44
LIG4-204ENST00000611712 ANP32CO43423 234 aa12.3□□□□□ -0.44
LIG4-204ENST00000611712 BCANQ96GW7 911 aa12.29□□□□□ -0.44
LIG4-204ENST00000611712 DDX10Q13206 875 aaKnown RBP12.28□□□□□ -0.44
LIG4-204ENST00000611712 ARID3CA6NKF2 412 aa12.28□□□□□ -0.44
LIG4-204ENST00000611712 POLR3GLQ9BT43 218 aa12.28□□□□□ -0.44
LIG4-204ENST00000611712 CLSPNQ9HAW4 1339 aa12.27□□□□□ -0.45
LIG4-204ENST00000611712 CNGB1Q14028 1251 aaPredicted RBP12.26□□□□□ -0.45
LIG4-204ENST00000611712 CCNB3Q8WWL7 1395 aa12.25□□□□□ -0.45
LIG4-204ENST00000611712 CUX2O14529 1486 aa12.24□□□□□ -0.45
LIG4-204ENST00000611712 ERICH6Q7L0X2 663 aa12.23□□□□□ -0.45
LIG4-204ENST00000611712 CARMIL1Q5VZK9 1371 aa12.22□□□□□ -0.45
LIG4-204ENST00000611712 TONSLQ96HA7 1378 aa12.22□□□□□ -0.45
LIG4-204ENST00000611712 HIRIP3Q9BW71 556 aaPredicted RBP12.21□□□□□ -0.45
LIG4-204ENST00000611712 MTUS2Q5JR59 1369 aa12.2□□□□□ -0.46
LIG4-204ENST00000611712 SIN3AQ96ST3 1273 aa12.18□□□□□ -0.46
LIG4-204ENST00000611712 SYNJ1O43426 1573 aa12.18□□□□□ -0.46
LIG4-204ENST00000611712 CHIC2Q9UKJ5 165 aa12.18□□□□□ -0.46
LIG4-204ENST00000611712 FBLN2P98095 1184 aa12.15□□□□□ -0.47
LIG4-204ENST00000611712 FKBP8Q14318 412 aa12.14□□□□□ -0.47
LIG4-204ENST00000611712 ZNF326Q5BKZ1 582 aaKnown RBP12.13□□□□□ -0.47
LIG4-204ENST00000611712 FHAD1B1AJZ9 1412 aa12.13□□□□□ -0.47
LIG4-204ENST00000611712 DHX57Q6P158 1386 aaKnown RBP12.12□□□□□ -0.47
LIG4-204ENST00000611712 KIF21BO75037 1637 aa12.12□□□□□ -0.47
LIG4-204ENST00000611712 RAB3GAP2Q9H2M9 1393 aa12.1□□□□□ -0.47
LIG4-204ENST00000611712 CADPSQ9ULU8 1353 aa12.1□□□□□ -0.47
LIG4-204ENST00000611712 RRP7BPQ9NSQ0 103 aa12.1□□□□□ -0.47
LIG4-204ENST00000611712 BICRAQ9NZM4 1560 aa12.1□□□□□ -0.47
Retrieved 100 of 20,778 RNA–protein pairs in 8.9 ms