RNA–Protein interactions for RNA: ENST00000591475.5

VPS4B-206, Transcript of vacuolar protein sorting 4 homolog B, humanhuman

TSL 1 (best)

Gene VPS4B, Length 2,008 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4B-206ENST00000591475 CCDC82Q8N4S0 544 aa12.29□□□□□ -0.44
VPS4B-206ENST00000591475 FANCBQ8NB91 859 aa12.29□□□□□ -0.44
VPS4B-206ENST00000591475 LZTFL1Q9NQ48 299 aa12.29□□□□□ -0.44
VPS4B-206ENST00000591475 TNRC6CQ9HCJ0 1690 aaKnown RBP12.29□□□□□ -0.44
VPS4B-206ENST00000591475 MYH13Q9UKX3 1938 aa12.29□□□□□ -0.44
VPS4B-206ENST00000591475 XBP1P17861 261 aa12.28□□□□□ -0.44
VPS4B-206ENST00000591475 PBX1P40424 430 aa12.28□□□□□ -0.44
VPS4B-206ENST00000591475 CDKAL1Q5VV42 579 aa12.28□□□□□ -0.44
VPS4B-206ENST00000591475 RAD9BQ6WBX8 426 aa12.28□□□□□ -0.44
VPS4B-206ENST00000591475 ZNF654Q8IZM8 581 aa12.28□□□□□ -0.44
VPS4B-206ENST00000591475 OXER1Q8TDS5 423 aa12.28□□□□□ -0.44
VPS4B-206ENST00000591475 CCDC51Q96ER9 411 aa12.28□□□□□ -0.44
VPS4B-206ENST00000591475 CRAMP1Q96RY5 1269 aa12.28□□□□□ -0.44
VPS4B-206ENST00000591475 RNF41Q9H4P4 317 aaPredicted RBP12.28□□□□□ -0.44
VPS4B-206ENST00000591475 ADD3Q9UEY8 706 aaKnown RBP12.28□□□□□ -0.44
VPS4B-206ENST00000591475 CDC23Q9UJX2 597 aa12.28□□□□□ -0.44
VPS4B-206ENST00000591475 MINPP1Q9UNW1 487 aa12.28□□□□□ -0.44
VPS4B-206ENST00000591475 MFAP3LO75121 409 aa12.28□□□□□ -0.44
VPS4B-206ENST00000591475 BBOX1O75936 387 aa12.28□□□□□ -0.44
VPS4B-206ENST00000591475 AKAP17AQ02040 695 aaKnown RBP12.28□□□□□ -0.44
VPS4B-206ENST00000591475 CUL4BQ13620 913 aa12.28□□□□□ -0.44
VPS4B-206ENST00000591475 PPP2R5BQ15173 497 aa12.28□□□□□ -0.44
VPS4B-206ENST00000591475 KLHL10Q6JEL2 608 aa12.28□□□□□ -0.44
VPS4B-206ENST00000591475 RASGRP2Q7LDG7 609 aa12.28□□□□□ -0.44
VPS4B-206ENST00000591475 SH3RF1Q7Z6J0 888 aa12.28□□□□□ -0.44
VPS4B-206ENST00000591475 CNGA4Q8IV77 575 aa12.28□□□□□ -0.44
VPS4B-206ENST00000591475 CMTR1Q8N1G2 835 aaKnown RBP12.28□□□□□ -0.44
VPS4B-206ENST00000591475 HELBQ8NG08 1087 aaPredicted RBP12.28□□□□□ -0.44
VPS4B-206ENST00000591475 NEK11Q8NG66 645 aa12.28□□□□□ -0.44
VPS4B-206ENST00000591475 NUP133Q8WUM0 1156 aa12.28□□□□□ -0.44
VPS4B-206ENST00000591475 HNRNPLLQ8WVV9 542 aaKnown RBP12.28□□□□□ -0.44
VPS4B-206ENST00000591475 PAGE5Q96GU1 130 aa12.28□□□□□ -0.44
VPS4B-206ENST00000591475 RNF26Q9BY78 433 aaPredicted RBP12.28□□□□□ -0.44
VPS4B-206ENST00000591475 IRX2Q9BZI1 471 aaPredicted RBP12.28□□□□□ -0.44
VPS4B-206ENST00000591475 ANKRD2Q9GZV1 360 aa12.28□□□□□ -0.44
VPS4B-206ENST00000591475 ZCCHC17Q9NP64 241 aaKnown RBP12.28□□□□□ -0.44
VPS4B-206ENST00000591475 SLC4A4Q9Y6R1 1079 aa12.28□□□□□ -0.44
VPS4B-206ENST00000591475 TULP2O00295 520 aa12.27□□□□□ -0.44
VPS4B-206ENST00000591475 PRKAB2O43741 272 aa12.27□□□□□ -0.44
VPS4B-206ENST00000591475 BMP15O95972 392 aa12.27□□□□□ -0.44
VPS4B-206ENST00000591475 SRGNP10124 158 aa12.27□□□□□ -0.44
VPS4B-206ENST00000591475 NPR1P16066 1061 aa12.27□□□□□ -0.44
VPS4B-206ENST00000591475 CD44P16070 742 aaKnown RBP12.27□□□□□ -0.44
VPS4B-206ENST00000591475 AFMP43652 599 aa12.27□□□□□ -0.44
VPS4B-206ENST00000591475 STX17P56962 302 aa12.27□□□□□ -0.44
VPS4B-206ENST00000591475 IRX5P78411 483 aaPredicted RBP12.27□□□□□ -0.44
VPS4B-206ENST00000591475 RASGRF1Q13972 1273 aa12.27□□□□□ -0.44
VPS4B-206ENST00000591475 MUM1L1Q5H9M0 696 aa12.27□□□□□ -0.44
VPS4B-206ENST00000591475 ZNF569Q5MCW4 686 aa12.27□□□□□ -0.44
VPS4B-206ENST00000591475 LCORLQ8N3X6 602 aa12.27□□□□□ -0.44
VPS4B-206ENST00000591475 CPLX3Q8WVH0 158 aa12.27□□□□□ -0.44
VPS4B-206ENST00000591475 FERMT2Q96AC1 680 aa12.27□□□□□ -0.44
VPS4B-206ENST00000591475 GSDMAQ96QA5 445 aa12.27□□□□□ -0.44
VPS4B-206ENST00000591475 UBAC1Q9BSL1 405 aa12.27□□□□□ -0.44
VPS4B-206ENST00000591475 TTF2Q9UNY4 1162 aaKnown RBP12.27□□□□□ -0.44
VPS4B-206ENST00000591475 ITIH6Q6UXX5 1313 aa12.27□□□□□ -0.45
VPS4B-206ENST00000591475 CASZ1Q86V15 1759 aa12.27□□□□□ -0.45
VPS4B-206ENST00000591475 A0A087X0B3 334 aa12.27□□□□□ -0.45
VPS4B-206ENST00000591475 CTAGE9A4FU28 777 aa12.27□□□□□ -0.45
VPS4B-206ENST00000591475 MAP2K7O14733 419 aa12.27□□□□□ -0.45
VPS4B-206ENST00000591475 ERLIN1O75477 346 aa12.27□□□□□ -0.45
VPS4B-206ENST00000591475 ALDH1B1P30837 517 aa12.27□□□□□ -0.45
VPS4B-206ENST00000591475 KRT2P35908 639 aa12.27□□□□□ -0.45
VPS4B-206ENST00000591475 KIF4BQ2VIQ3 1234 aa12.27□□□□□ -0.45
VPS4B-206ENST00000591475 TMC4Q7Z404 712 aa12.27□□□□□ -0.45
VPS4B-206ENST00000591475 EPSTI1Q96J88 318 aa12.27□□□□□ -0.45
VPS4B-206ENST00000591475 ZSWIM4Q9H7M6 989 aa12.27□□□□□ -0.45
VPS4B-206ENST00000591475 PODXL2Q9NZ53 605 aa12.27□□□□□ -0.45
VPS4B-206ENST00000591475 COL4A1P02462 1669 aa12.26□□□□□ -0.45
VPS4B-206ENST00000591475 FECHP22830 423 aa12.26□□□□□ -0.45
VPS4B-206ENST00000591475 CASP14P31944 242 aa12.26□□□□□ -0.45
VPS4B-206ENST00000591475 USP5P45974 858 aa12.26□□□□□ -0.45
VPS4B-206ENST00000591475 DPYDQ12882 1025 aa12.26□□□□□ -0.45
VPS4B-206ENST00000591475 UBE4AQ14139 1066 aa12.26□□□□□ -0.45
VPS4B-206ENST00000591475 R3HDM1Q15032 1099 aaKnown RBP12.26□□□□□ -0.45
VPS4B-206ENST00000591475 MSANTD4Q8NCY6 345 aa12.26□□□□□ -0.45
VPS4B-206ENST00000591475 SYMPKQ92797 1274 aaKnown RBP12.26□□□□□ -0.45
VPS4B-206ENST00000591475 EXOC4Q96A65 974 aa12.26□□□□□ -0.45
VPS4B-206ENST00000591475 MTFR1LQ9H019 292 aa12.26□□□□□ -0.45
VPS4B-206ENST00000591475 TSPYL1Q9H0U9 437 aa12.26□□□□□ -0.45
VPS4B-206ENST00000591475 ANKZF1Q9H8Y5 726 aa12.26□□□□□ -0.45
VPS4B-206ENST00000591475 PSD3Q9NYI0 1048 aa12.26□□□□□ -0.45
VPS4B-206ENST00000591475 PUF60Q9UHX1 559 aaKnown RBP12.26□□□□□ -0.45
VPS4B-206ENST00000591475 DLEC1Q9Y238 1755 aa12.26□□□□□ -0.45
VPS4B-206ENST00000591475 PPP1R3GB7ZBB8 358 aa12.25□□□□□ -0.45
VPS4B-206ENST00000591475 H0YIN7 160 aa12.25□□□□□ -0.45
VPS4B-206ENST00000591475 PPARAQ07869 468 aa12.25□□□□□ -0.45
VPS4B-206ENST00000591475 HDXQ7Z353 690 aa12.25□□□□□ -0.45
VPS4B-206ENST00000591475 TMTC1Q8IUR5 882 aa12.25□□□□□ -0.45
VPS4B-206ENST00000591475 MASTLQ96GX5 879 aa12.25□□□□□ -0.45
VPS4B-206ENST00000591475 RAB21Q9UL25 225 aa12.25□□□□□ -0.45
VPS4B-206ENST00000591475 FAM205CA6NFA0 338 aa12.25□□□□□ -0.45
VPS4B-206ENST00000591475 GYPCP04921 128 aa12.25□□□□□ -0.45
VPS4B-206ENST00000591475 MSL3Q8N5Y2 521 aaKnown RBP12.25□□□□□ -0.45
VPS4B-206ENST00000591475 PHF20Q9BVI0 1012 aa12.25□□□□□ -0.45
VPS4B-206ENST00000591475 BRMS1Q9HCU9 246 aa12.25□□□□□ -0.45
VPS4B-206ENST00000591475 TMEM51Q9NW97 253 aa12.25□□□□□ -0.45
VPS4B-206ENST00000591475 VPS54Q9P1Q0 977 aa12.25□□□□□ -0.45
VPS4B-206ENST00000591475 A0A0U1RQG5 324 aaPredicted RBP12.24□□□□□ -0.45
VPS4B-206ENST00000591475 A0A0U1RQJ8 604 aa12.24□□□□□ -0.45
Retrieved 100 of 20,778 RNA–protein pairs in 41.2 ms