RNA–Protein interactions for RNA: ENST00000568422.6

CLN3-231, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,168 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-231ENST00000568422 LRRFIP1Q32MZ4 808 aaKnown RBP20.19■□□□□ 0.82
CLN3-231ENST00000568422 TDHQ8IZJ6 230 aa20.19■□□□□ 0.82
CLN3-231ENST00000568422 ARRDC4Q8NCT1 418 aa20.19■□□□□ 0.82
CLN3-231ENST00000568422 APPBP2Q92624 585 aa20.19■□□□□ 0.82
CLN3-231ENST00000568422 SENP6Q9GZR1 1112 aaPredicted RBP20.19■□□□□ 0.82
CLN3-231ENST00000568422 PLXNA1Q9UIW2 1896 aa20.18■□□□□ 0.82
CLN3-231ENST00000568422 SOX1O00570 391 aaPredicted RBP20.18■□□□□ 0.82
CLN3-231ENST00000568422 SEPT4O43236 478 aa20.18■□□□□ 0.82
CLN3-231ENST00000568422 GNAT2P19087 354 aa20.18■□□□□ 0.82
CLN3-231ENST00000568422 COPB2P35606 906 aa20.18■□□□□ 0.82
CLN3-231ENST00000568422 TRPV1Q8NER1 839 aa20.18■□□□□ 0.82
CLN3-231ENST00000568422 ZNF287Q9HBT7 754 aa20.18■□□□□ 0.82
CLN3-231ENST00000568422 GSG1L2A8MUP6 293 aa20.17■□□□□ 0.82
CLN3-231ENST00000568422 RNF113AO15541 343 aaKnown RBP20.17■□□□□ 0.82
CLN3-231ENST00000568422 LRIT3Q3SXY7 679 aa20.17■□□□□ 0.82
CLN3-231ENST00000568422 UBE2OQ9C0C9 1292 aaKnown RBP20.17■□□□□ 0.82
CLN3-231ENST00000568422 MKNK2Q9HBH9 465 aa20.17■□□□□ 0.82
CLN3-231ENST00000568422 PPP1R9AQ9ULJ8 1098 aa20.17■□□□□ 0.82
CLN3-231ENST00000568422 ROBO3Q96MS0 1386 aa20.17■□□□□ 0.82
CLN3-231ENST00000568422 MYH4Q9Y623 1939 aa20.16■□□□□ 0.82
CLN3-231ENST00000568422 VWA5AO00534 786 aa20.16■□□□□ 0.82
CLN3-231ENST00000568422 SAMD1Q6SPF0 538 aaPredicted RBP20.16■□□□□ 0.82
CLN3-231ENST00000568422 RIOX2Q8IUF8 465 aa20.16■□□□□ 0.82
CLN3-231ENST00000568422 OSBP2Q969R2 916 aa20.16■□□□□ 0.82
CLN3-231ENST00000568422 LRCH3Q96II8 777 aa20.16■□□□□ 0.82
CLN3-231ENST00000568422 MAML3Q96JK9 1138 aa20.16■□□□□ 0.82
CLN3-231ENST00000568422 GNL3Q9BVP2 549 aaKnown RBP eCLIP20.16■□□□□ 0.82
CLN3-231ENST00000568422 NYAP2Q9P242 653 aa20.16■□□□□ 0.82
CLN3-231ENST00000568422 NRBP1Q9UHY1 535 aa20.16■□□□□ 0.82
CLN3-231ENST00000568422 DIS3Q9Y2L1 958 aaKnown RBP20.16■□□□□ 0.82
CLN3-231ENST00000568422 RASA1P20936 1047 aa20.15■□□□□ 0.82
CLN3-231ENST00000568422 STAT3P40763 770 aa20.15■□□□□ 0.82
CLN3-231ENST00000568422 MMP19Q99542 508 aa20.15■□□□□ 0.82
CLN3-231ENST00000568422 FBXO28Q9NVF7 368 aa20.15■□□□□ 0.82
CLN3-231ENST00000568422 TTC41PQ6P2S7 1318 aa20.15■□□□□ 0.82
CLN3-231ENST00000568422 MINDY4BA8MYZ0 360 aa20.14■□□□□ 0.81
CLN3-231ENST00000568422 KBTBD13C9JR72 458 aa20.14■□□□□ 0.81
CLN3-231ENST00000568422 ERC2O15083 957 aa20.14■□□□□ 0.81
CLN3-231ENST00000568422 GPAA1O43292 621 aa20.14■□□□□ 0.81
CLN3-231ENST00000568422 RAD21O60216 631 aa20.14■□□□□ 0.81
CLN3-231ENST00000568422 KCTD2Q14681 263 aa20.14■□□□□ 0.81
CLN3-231ENST00000568422 FAM83BQ5T0W9 1011 aa20.14■□□□□ 0.81
CLN3-231ENST00000568422 ZNF214Q9UL59 606 aaPredicted RBP20.14■□□□□ 0.81
CLN3-231ENST00000568422 LBHD1Q9BQE6 289 aaPredicted RBP20.13■□□□□ 0.81
CLN3-231ENST00000568422 PRKAG2Q9UGJ0 569 aa20.13■□□□□ 0.81
CLN3-231ENST00000568422 SYNPO2Q9UMS6 1093 aa20.13■□□□□ 0.81
CLN3-231ENST00000568422 SMCHD1A6NHR9 2005 aa20.12■□□□□ 0.81
CLN3-231ENST00000568422 PATL2C9JE40 543 aaKnown RBP20.12■□□□□ 0.81
CLN3-231ENST00000568422 F5H6K3 240 aa20.12■□□□□ 0.81
CLN3-231ENST00000568422 APPP05067 770 aa20.12■□□□□ 0.81
CLN3-231ENST00000568422 TDO2P48775 406 aa20.12■□□□□ 0.81
CLN3-231ENST00000568422 ATN1P54259 1190 aaPredicted RBP20.12■□□□□ 0.81
CLN3-231ENST00000568422 KLRC3Q07444 240 aa20.12■□□□□ 0.81
CLN3-231ENST00000568422 GJC2Q5T442 439 aaPredicted RBP20.12■□□□□ 0.81
CLN3-231ENST00000568422 ZNF444Q8N0Y2 327 aaPredicted RBP20.12■□□□□ 0.81
CLN3-231ENST00000568422 PRPF38AQ8NAV1 312 aaKnown RBP20.12■□□□□ 0.81
CLN3-231ENST00000568422 REPS2Q8NFH8 660 aa20.12■□□□□ 0.81
CLN3-231ENST00000568422 SLF1Q9BQI6 1058 aa20.12■□□□□ 0.81
CLN3-231ENST00000568422 NACAP1Q9BZK3 213 aa20.12■□□□□ 0.81
CLN3-231ENST00000568422 RTP1P59025 263 aa20.11■□□□□ 0.81
CLN3-231ENST00000568422 MDM2Q00987 491 aaPredicted RBP20.11■□□□□ 0.81
CLN3-231ENST00000568422 TSHZ3Q63HK5 1081 aa20.11■□□□□ 0.81
CLN3-231ENST00000568422 SLC39A5Q6ZMH5 540 aa20.11■□□□□ 0.81
CLN3-231ENST00000568422 TINF2Q9BSI4 451 aa20.11■□□□□ 0.81
CLN3-231ENST00000568422 TEX13BQ9BXU2 312 aa20.11■□□□□ 0.81
CLN3-231ENST00000568422 IGKV6D-41A0A0C4DH26 115 aa20.1■□□□□ 0.81
CLN3-231ENST00000568422 NDUFB10O96000 172 aa20.1■□□□□ 0.81
CLN3-231ENST00000568422 ZNF792Q3KQV3 632 aa20.1■□□□□ 0.81
CLN3-231ENST00000568422 PRAMEF19Q5SWL8 479 aa20.1■□□□□ 0.81
CLN3-231ENST00000568422 IFNL3Q8IZI9 196 aa20.1■□□□□ 0.81
CLN3-231ENST00000568422 STK11IPQ8N1F8 1099 aa20.1■□□□□ 0.81
CLN3-231ENST00000568422 MSL3Q8N5Y2 521 aaKnown RBP20.1■□□□□ 0.81
CLN3-231ENST00000568422 MKL1Q969V6 931 aa20.1■□□□□ 0.81
CLN3-231ENST00000568422 EPB41L4AQ9HCS5 686 aaPredicted RBP20.1■□□□□ 0.81
CLN3-231ENST00000568422 CLIP2Q9UDT6 1046 aa20.1■□□□□ 0.81
CLN3-231ENST00000568422 LTBP2Q14767 1821 aa20.09■□□□□ 0.81
CLN3-231ENST00000568422 COL6A3P12111 3177 aa20.09■□□□□ 0.81
CLN3-231ENST00000568422 M0R2C6 588 aa20.09■□□□□ 0.81
CLN3-231ENST00000568422 ATP2A1O14983 1001 aa20.09■□□□□ 0.81
CLN3-231ENST00000568422 PGK2P07205 417 aa20.09■□□□□ 0.81
CLN3-231ENST00000568422 SLC3A2P08195 630 aaKnown RBP20.09■□□□□ 0.81
CLN3-231ENST00000568422 RARBP10826 455 aa20.09■□□□□ 0.81
CLN3-231ENST00000568422 PDE4BQ07343 736 aa20.09■□□□□ 0.81
CLN3-231ENST00000568422 SNX17Q15036 470 aa20.09■□□□□ 0.81
CLN3-231ENST00000568422 LRRC41Q15345 812 aa20.09■□□□□ 0.81
CLN3-231ENST00000568422 C1orf53Q5VUE5 145 aa20.09■□□□□ 0.81
CLN3-231ENST00000568422 ANO1Q5XXA6 986 aa20.09■□□□□ 0.81
CLN3-231ENST00000568422 DEFB123Q8N688 67 aa20.09■□□□□ 0.81
CLN3-231ENST00000568422 NUP88Q99567 741 aaPredicted RBP20.09■□□□□ 0.81
CLN3-231ENST00000568422 TTLL1O95922 423 aa20.08■□□□□ 0.81
CLN3-231ENST00000568422 SNRNP48Q6IEG0 339 aaKnown RBP20.08■□□□□ 0.81
CLN3-231ENST00000568422 GMCL1P1Q8NEA9 526 aa20.08■□□□□ 0.81
CLN3-231ENST00000568422 PI4K2BQ8TCG2 481 aa20.08■□□□□ 0.81
CLN3-231ENST00000568422 XPNPEP3Q9NQH7 507 aa20.08■□□□□ 0.81
CLN3-231ENST00000568422 MTMR4Q9NYA4 1195 aa20.08■□□□□ 0.81
CLN3-231ENST00000568422 ATP11BQ9Y2G3 1177 aa20.08■□□□□ 0.81
CLN3-231ENST00000568422 PCDHB15Q9Y5E8 787 aa20.08■□□□□ 0.81
CLN3-231ENST00000568422 PLIN4Q96Q06 1357 aa20.08■□□□□ 0.8
CLN3-231ENST00000568422 ZBED4O75132 1171 aa20.07■□□□□ 0.8
CLN3-231ENST00000568422 MYCNP04198 464 aaPredicted RBP20.07■□□□□ 0.8
Retrieved 100 of 20,778 RNA–protein pairs in 17.8 ms