RNA–Protein interactions for RNA: ENST00000552823.5

LIMA1-215, Transcript of LIM domain and actin binding 1, humanhuman

APPRIS ALT2 TSL 2 BASIC

Gene LIMA1, Length 3,254 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-215ENST00000552823 CCZ1BP86790 482 aa6.35□□□□□ -1.39
LIMA1-215ENST00000552823 CCZ1P86791 482 aaPredicted RBP6.35□□□□□ -1.39
LIMA1-215ENST00000552823 PDCL2Q8N4E4 241 aa6.35□□□□□ -1.39
LIMA1-215ENST00000552823 PDGFDQ9GZP0 370 aaPredicted RBP6.35□□□□□ -1.39
LIMA1-215ENST00000552823 ARPP21Q9UBL0 812 aaPredicted RBP6.35□□□□□ -1.39
LIMA1-215ENST00000552823 SEC63Q9UGP8 760 aaKnown RBP6.35□□□□□ -1.39
LIMA1-215ENST00000552823 SRPRBQ9Y5M8 271 aaKnown RBP6.35□□□□□ -1.39
LIMA1-215ENST00000552823 CNTNAP5Q8WYK1 1306 aa6.34□□□□□ -1.39
LIMA1-215ENST00000552823 TJP1Q07157 1748 aa6.34□□□□□ -1.39
LIMA1-215ENST00000552823 CLRN2A0PK11 232 aa6.34□□□□□ -1.39
LIMA1-215ENST00000552823 TFRCP02786 760 aaKnown RBP6.34□□□□□ -1.39
LIMA1-215ENST00000552823 RASA1P20936 1047 aa6.34□□□□□ -1.39
LIMA1-215ENST00000552823 GNG11P61952 73 aa6.34□□□□□ -1.39
LIMA1-215ENST00000552823 DPYDQ12882 1025 aa6.34□□□□□ -1.39
LIMA1-215ENST00000552823 SLC35G1Q2M3R5 365 aa6.34□□□□□ -1.39
LIMA1-215ENST00000552823 USH1GQ495M9 461 aa6.34□□□□□ -1.39
LIMA1-215ENST00000552823 MRFAP1L1Q96HT8 127 aa6.34□□□□□ -1.39
LIMA1-215ENST00000552823 KANSL2Q9H9L4 492 aa6.34□□□□□ -1.39
LIMA1-215ENST00000552823 TRPC5Q9UL62 973 aaPredicted RBP6.34□□□□□ -1.39
LIMA1-215ENST00000552823 TFR2Q9UP52 801 aa6.34□□□□□ -1.39
LIMA1-215ENST00000552823 AKAP11Q9UKA4 1901 aa6.34□□□□□ -1.39
LIMA1-215ENST00000552823 CNTNAP4Q9C0A0 1308 aa6.34□□□□□ -1.39
LIMA1-215ENST00000552823 PPEF1O14829 653 aaPredicted RBP6.34□□□□□ -1.39
LIMA1-215ENST00000552823 DNA2P51530 1060 aa6.34□□□□□ -1.39
LIMA1-215ENST00000552823 UBXN2AP68543 259 aa6.34□□□□□ -1.39
LIMA1-215ENST00000552823 RBM6P78332 1123 aaKnown RBP6.34□□□□□ -1.39
LIMA1-215ENST00000552823 LRRC41Q15345 812 aa6.34□□□□□ -1.39
LIMA1-215ENST00000552823 DTHD1Q6ZMT9 781 aa6.34□□□□□ -1.39
LIMA1-215ENST00000552823 COL23A1Q86Y22 540 aaPredicted RBP6.34□□□□□ -1.39
LIMA1-215ENST00000552823 PHF20Q9BVI0 1012 aa6.34□□□□□ -1.39
LIMA1-215ENST00000552823 DDX4Q9NQI0 724 aaKnown RBP6.34□□□□□ -1.39
LIMA1-215ENST00000552823 FRMD4AQ9P2Q2 1039 aaPredicted RBP6.34□□□□□ -1.39
LIMA1-215ENST00000552823 HPSEQ9Y251 543 aa6.34□□□□□ -1.39
LIMA1-215ENST00000552823 FUT2Q10981 343 aa6.33□□□□□ -1.4
LIMA1-215ENST00000552823 ELF2Q15723 593 aa6.33□□□□□ -1.4
LIMA1-215ENST00000552823 IL17AQ16552 155 aa6.33□□□□□ -1.4
LIMA1-215ENST00000552823 E4F1Q66K89 784 aaPredicted RBP6.33□□□□□ -1.4
LIMA1-215ENST00000552823 PPFIBP1Q86W92 1011 aa6.33□□□□□ -1.4
LIMA1-215ENST00000552823 ZNF710Q8N1W2 664 aa6.33□□□□□ -1.4
LIMA1-215ENST00000552823 PROM2Q8N271 834 aa6.33□□□□□ -1.4
LIMA1-215ENST00000552823 NOC3LQ8WTT2 800 aaKnown RBP6.33□□□□□ -1.4
LIMA1-215ENST00000552823 RBM28Q9NW13 759 aaKnown RBP6.33□□□□□ -1.4
LIMA1-215ENST00000552823 PKD2L1Q9P0L9 805 aa6.33□□□□□ -1.4
LIMA1-215ENST00000552823 LEMD3Q9Y2U8 911 aa6.33□□□□□ -1.4
LIMA1-215ENST00000552823 DAGLAQ9Y4D2 1042 aa6.33□□□□□ -1.4
LIMA1-215ENST00000552823 BCL9LQ86UU0 1499 aa6.33□□□□□ -1.4
LIMA1-215ENST00000552823 ADAMTS7Q9UKP4 1686 aa6.33□□□□□ -1.4
LIMA1-215ENST00000552823 USP17L15C9J2P7 530 aa6.33□□□□□ -1.4
LIMA1-215ENST00000552823 USP17L13C9JLJ4 530 aa6.33□□□□□ -1.4
LIMA1-215ENST00000552823 USP17L11C9JVI0 530 aa6.33□□□□□ -1.4
LIMA1-215ENST00000552823 USP17L18D6R9N7 530 aa6.33□□□□□ -1.4
LIMA1-215ENST00000552823 USP17L22D6RA61 530 aa6.33□□□□□ -1.4
LIMA1-215ENST00000552823 USP17L17D6RBQ6 530 aa6.33□□□□□ -1.4
LIMA1-215ENST00000552823 USP17L19D6RCP7 530 aa6.33□□□□□ -1.4
LIMA1-215ENST00000552823 USP17L20D6RJB6 530 aa6.33□□□□□ -1.4
LIMA1-215ENST00000552823 DYNC1I1O14576 645 aa6.33□□□□□ -1.4
LIMA1-215ENST00000552823 RAD17O75943 681 aa6.33□□□□□ -1.4
LIMA1-215ENST00000552823 CALM1P0DP23 149 aa6.33□□□□□ -1.4
LIMA1-215ENST00000552823 CALM2P0DP24 149 aa6.33□□□□□ -1.4
LIMA1-215ENST00000552823 CALM3P0DP25 149 aa6.33□□□□□ -1.4
LIMA1-215ENST00000552823 TXLNAP40222 546 aa6.33□□□□□ -1.4
LIMA1-215ENST00000552823 ASIC1P78348 528 aa6.33□□□□□ -1.4
LIMA1-215ENST00000552823 GSTO1P78417 241 aa6.33□□□□□ -1.4
LIMA1-215ENST00000552823 USP17L24Q0WX57 530 aa6.33□□□□□ -1.4
LIMA1-215ENST00000552823 ERCC6LQ2NKX8 1250 aa6.33□□□□□ -1.4
LIMA1-215ENST00000552823 USP17L6PQ6QN14 398 aa6.33□□□□□ -1.4
LIMA1-215ENST00000552823 FNBP4Q8N3X1 1017 aaPredicted RBP6.33□□□□□ -1.4
LIMA1-215ENST00000552823 CCDC34Q96HJ3 373 aa6.33□□□□□ -1.4
LIMA1-215ENST00000552823 MED15Q96RN5 788 aa6.33□□□□□ -1.4
LIMA1-215ENST00000552823 VEZTQ9HBM0 779 aa6.33□□□□□ -1.4
LIMA1-215ENST00000552823 EIF4ENIF1Q9NRA8 985 aaKnown RBP6.33□□□□□ -1.4
LIMA1-215ENST00000552823 DDX52Q9Y2R4 599 aaKnown RBP eCLIP6.33□□□□□ -1.4
LIMA1-215ENST00000552823 LAMA4Q16363 1823 aa6.33□□□□□ -1.4
LIMA1-215ENST00000552823 WDR19Q8NEZ3 1342 aa6.33□□□□□ -1.4
LIMA1-215ENST00000552823 SOWAHDA6NJG2 315 aa6.33□□□□□ -1.4
LIMA1-215ENST00000552823 TCP10L2B9ZVM9 353 aa6.33□□□□□ -1.4
LIMA1-215ENST00000552823 ACTN4O43707 911 aaKnown RBP6.33□□□□□ -1.4
LIMA1-215ENST00000552823 PFKFB3Q16875 520 aaPredicted RBP6.33□□□□□ -1.4
LIMA1-215ENST00000552823 RC3H1Q5TC82 1133 aaKnown RBP6.33□□□□□ -1.4
LIMA1-215ENST00000552823 TOGARAM2Q6ZUX3 1019 aa6.33□□□□□ -1.4
LIMA1-215ENST00000552823 FCHSD1Q86WN1 690 aa6.33□□□□□ -1.4
LIMA1-215ENST00000552823 FBXL16Q8N461 479 aa6.33□□□□□ -1.4
LIMA1-215ENST00000552823 CERS5Q8N5B7 392 aa6.33□□□□□ -1.4
LIMA1-215ENST00000552823 IGSF22Q8N9C0 903 aa6.33□□□□□ -1.4
LIMA1-215ENST00000552823 IQUBQ8NA54 791 aa6.33□□□□□ -1.4
LIMA1-215ENST00000552823 KIF18AQ8NI77 898 aa6.33□□□□□ -1.4
LIMA1-215ENST00000552823 TBCKQ8TEA7 893 aa6.33□□□□□ -1.4
LIMA1-215ENST00000552823 CDK5RAP3Q96JB5 506 aa6.33□□□□□ -1.4
LIMA1-215ENST00000552823 TDRD3Q9H7E2 651 aaKnown RBP6.33□□□□□ -1.4
LIMA1-215ENST00000552823 SLC39A2Q9NP94 309 aa6.33□□□□□ -1.4
LIMA1-215ENST00000552823 PARP3Q9Y6F1 533 aa6.33□□□□□ -1.4
LIMA1-215ENST00000552823 PLEKHG2Q9H7P9 1386 aa6.32□□□□□ -1.4
LIMA1-215ENST00000552823 FLT1P17948 1338 aa6.32□□□□□ -1.4
LIMA1-215ENST00000552823 POTEMA6NI47 508 aa6.32□□□□□ -1.4
LIMA1-215ENST00000552823 TDP2O95551 362 aa6.32□□□□□ -1.4
LIMA1-215ENST00000552823 CAVIN2O95810 425 aa6.32□□□□□ -1.4
LIMA1-215ENST00000552823 ATP2B4P23634 1241 aa6.32□□□□□ -1.4
LIMA1-215ENST00000552823 KCTD19Q17RG1 926 aaPredicted RBP6.32□□□□□ -1.4
LIMA1-215ENST00000552823 TEX35Q5T0J7 233 aa6.32□□□□□ -1.4
LIMA1-215ENST00000552823 MIGA2Q7L4E1 593 aa6.32□□□□□ -1.4
Retrieved 100 of 20,778 RNA–protein pairs in 71.9 ms