RNA–Protein interactions for RNA: ENST00000414879.5

PTPRF-205, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 2

Gene PTPRF, Length 4,836 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-205ENST00000414879 POLR3EQ9NVU0 708 aa13.35□□□□□ -0.27
PTPRF-205ENST00000414879 TLR7Q9NYK1 1049 aaKnown RBP13.35□□□□□ -0.27
PTPRF-205ENST00000414879 KCNJ14Q9UNX9 436 aa13.35□□□□□ -0.27
PTPRF-205ENST00000414879 MMP10P09238 476 aa13.34□□□□□ -0.27
PTPRF-205ENST00000414879 MYCLP12524 364 aaPredicted RBP13.34□□□□□ -0.27
PTPRF-205ENST00000414879 STX17P56962 302 aa13.34□□□□□ -0.27
PTPRF-205ENST00000414879 PPP2R3AQ06190 1150 aa13.34□□□□□ -0.27
PTPRF-205ENST00000414879 CYP26C1Q6V0L0 522 aa13.34□□□□□ -0.27
PTPRF-205ENST00000414879 ARHGAP27Q6ZUM4 889 aa13.34□□□□□ -0.27
PTPRF-205ENST00000414879 NOX5Q96PH1 765 aa13.34□□□□□ -0.27
PTPRF-205ENST00000414879 BAG1Q99933 345 aaPredicted RBP13.34□□□□□ -0.27
PTPRF-205ENST00000414879 JPH2Q9BR39 696 aaPredicted RBP13.34□□□□□ -0.27
PTPRF-205ENST00000414879 CCDC77Q9BR77 488 aa13.34□□□□□ -0.27
PTPRF-205ENST00000414879 SH3GLB2Q9NR46 395 aa13.34□□□□□ -0.27
PTPRF-205ENST00000414879 PCDHA12Q9UN75 941 aa13.34□□□□□ -0.27
PTPRF-205ENST00000414879 ADGRB2O60241 1585 aa13.34□□□□□ -0.27
PTPRF-205ENST00000414879 N4BP1O75113 896 aaKnown RBP13.34□□□□□ -0.27
PTPRF-205ENST00000414879 PRPF4BQ13523 1007 aaKnown RBP13.34□□□□□ -0.27
PTPRF-205ENST00000414879 GPR162Q16538 588 aa13.34□□□□□ -0.27
PTPRF-205ENST00000414879 SMCR8Q8TEV9 937 aaPredicted RBP13.34□□□□□ -0.27
PTPRF-205ENST00000414879 STMN4Q9H169 189 aaPredicted RBP13.34□□□□□ -0.27
PTPRF-205ENST00000414879 PALD1Q9ULE6 856 aa13.34□□□□□ -0.27
PTPRF-205ENST00000414879 CTNND2Q9UQB3 1225 aa13.34□□□□□ -0.27
PTPRF-205ENST00000414879 SBDSQ9Y3A5 250 aaKnown RBP eCLIP13.34□□□□□ -0.27
PTPRF-205ENST00000414879 SHTN1A0MZ66 631 aa13.34□□□□□ -0.27
PTPRF-205ENST00000414879 PRPF3O43395 683 aaKnown RBP13.34□□□□□ -0.27
PTPRF-205ENST00000414879 GTPBP6O43824 516 aaPredicted RBP13.34□□□□□ -0.27
PTPRF-205ENST00000414879 CIAPIN1Q6FI81 312 aa13.34□□□□□ -0.27
PTPRF-205ENST00000414879 CPXCR1Q8N123 301 aa13.34□□□□□ -0.27
PTPRF-205ENST00000414879 KIFC2Q96AC6 838 aa13.34□□□□□ -0.27
PTPRF-205ENST00000414879 PIM2Q9P1W9 311 aa13.34□□□□□ -0.27
PTPRF-205ENST00000414879 RASGRF1Q13972 1273 aa13.34□□□□□ -0.27
PTPRF-205ENST00000414879 SMC1AQ14683 1233 aaKnown RBP13.34□□□□□ -0.27
PTPRF-205ENST00000414879 NECTIN1Q15223 517 aa13.34□□□□□ -0.27
PTPRF-205ENST00000414879 SKIDA1Q1XH10 827 aa13.34□□□□□ -0.27
PTPRF-205ENST00000414879 MIER3Q7Z3K6 550 aa13.34□□□□□ -0.27
PTPRF-205ENST00000414879 CSRNP1Q96S65 589 aa13.34□□□□□ -0.27
PTPRF-205ENST00000414879 TEKT3Q9BXF9 490 aa13.34□□□□□ -0.27
PTPRF-205ENST00000414879 SH2B2O14492 632 aaPredicted RBP13.33□□□□□ -0.27
PTPRF-205ENST00000414879 RGL2O15211 777 aa13.33□□□□□ -0.27
PTPRF-205ENST00000414879 KIAA1468Q9P260 1216 aa13.33□□□□□ -0.27
PTPRF-205ENST00000414879 MTUS1Q9ULD2 1270 aa13.33□□□□□ -0.27
PTPRF-205ENST00000414879 ZBTB21Q9ULJ3 1066 aa13.33□□□□□ -0.27
PTPRF-205ENST00000414879 PCDHA4Q9UN74 947 aa13.33□□□□□ -0.27
PTPRF-205ENST00000414879 UTP18Q9Y5J1 556 aaKnown RBP eCLIP13.33□□□□□ -0.27
PTPRF-205ENST00000414879 FSD2A1L4K1 749 aa13.33□□□□□ -0.28
PTPRF-205ENST00000414879 MACROD2A1Z1Q3 448 aa13.33□□□□□ -0.28
PTPRF-205ENST00000414879 CCDC169A6NNP5 214 aa13.33□□□□□ -0.28
PTPRF-205ENST00000414879 ADD1P35611 737 aaKnown RBP13.33□□□□□ -0.28
PTPRF-205ENST00000414879 SCNN1DP51172 638 aa13.33□□□□□ -0.28
PTPRF-205ENST00000414879 CCDC155Q8N6L0 562 aa13.33□□□□□ -0.28
PTPRF-205ENST00000414879 IGSF22Q8N9C0 903 aa13.33□□□□□ -0.28
PTPRF-205ENST00000414879 FAM107BQ9H098 131 aa13.33□□□□□ -0.28
PTPRF-205ENST00000414879 WWC3Q9ULE0 1092 aa13.33□□□□□ -0.28
PTPRF-205ENST00000414879 M0R2C6 588 aa13.33□□□□□ -0.28
PTPRF-205ENST00000414879 NDC80O14777 642 aa13.33□□□□□ -0.28
PTPRF-205ENST00000414879 IBSPP21815 317 aaPredicted RBP13.33□□□□□ -0.28
PTPRF-205ENST00000414879 FANCCQ00597 558 aa13.33□□□□□ -0.28
PTPRF-205ENST00000414879 ORC2Q13416 577 aaPredicted RBP13.33□□□□□ -0.28
PTPRF-205ENST00000414879 SP8Q8IXZ3 490 aa13.33□□□□□ -0.28
PTPRF-205ENST00000414879 STAG1Q8WVM7 1258 aa13.33□□□□□ -0.28
PTPRF-205ENST00000414879 DYDC1Q8WWB3 177 aa13.33□□□□□ -0.28
PTPRF-205ENST00000414879 CSRNP2Q9H175 543 aa13.33□□□□□ -0.28
PTPRF-205ENST00000414879 METTL14Q9HCE5 456 aaKnown RBP13.33□□□□□ -0.28
PTPRF-205ENST00000414879 CEMIPQ8WUJ3 1361 aa13.33□□□□□ -0.28
PTPRF-205ENST00000414879 BCRP11274 1271 aa13.33□□□□□ -0.28
PTPRF-205ENST00000414879 SLC39A14Q15043 492 aa13.33□□□□□ -0.28
PTPRF-205ENST00000414879 HLFQ16534 295 aa13.33□□□□□ -0.28
PTPRF-205ENST00000414879 USH1GQ495M9 461 aa13.33□□□□□ -0.28
PTPRF-205ENST00000414879 ZNF512BQ96KM6 892 aaPredicted RBP13.33□□□□□ -0.28
PTPRF-205ENST00000414879 STRBPQ96SI9 672 aaKnown RBP13.33□□□□□ -0.28
PTPRF-205ENST00000414879 WDR11Q9BZH6 1224 aa13.33□□□□□ -0.28
PTPRF-205ENST00000414879 ALDH8A1Q9H2A2 487 aaPredicted RBP13.33□□□□□ -0.28
PTPRF-205ENST00000414879 MINPP1Q9UNW1 487 aa13.33□□□□□ -0.28
PTPRF-205ENST00000414879 SLU7O95391 586 aaKnown RBP13.32□□□□□ -0.28
PTPRF-205ENST00000414879 ZYXQ15942 572 aaKnown RBP13.32□□□□□ -0.28
PTPRF-205ENST00000414879 SPECC1Q5M775 1068 aa13.32□□□□□ -0.28
PTPRF-205ENST00000414879 ARHGEF16Q5VV41 709 aa13.32□□□□□ -0.28
PTPRF-205ENST00000414879 OSBP2Q969R2 916 aa13.32□□□□□ -0.28
PTPRF-205ENST00000414879 JAKMIP2Q96AA8 810 aa13.32□□□□□ -0.28
PTPRF-205ENST00000414879 CRAMP1Q96RY5 1269 aa13.32□□□□□ -0.28
PTPRF-205ENST00000414879 ADD3Q9UEY8 706 aaKnown RBP13.32□□□□□ -0.28
PTPRF-205ENST00000414879 PCDHA1Q9Y5I3 950 aa13.32□□□□□ -0.28
PTPRF-205ENST00000414879 COL4A3BPQ9Y5P4 624 aa13.32□□□□□ -0.28
PTPRF-205ENST00000414879 USP42Q9H9J4 1324 aaKnown RBP13.32□□□□□ -0.28
PTPRF-205ENST00000414879 TCP10L2B9ZVM9 353 aa13.32□□□□□ -0.28
PTPRF-205ENST00000414879 TNNC1P63316 161 aa13.32□□□□□ -0.28
PTPRF-205ENST00000414879 FAM193AP78312 1265 aa13.32□□□□□ -0.28
PTPRF-205ENST00000414879 SLC9C1Q4G0N8 1177 aa13.32□□□□□ -0.28
PTPRF-205ENST00000414879 PODXL2Q9NZ53 605 aa13.32□□□□□ -0.28
PTPRF-205ENST00000414879 LARSQ9P2J5 1176 aaKnown RBP13.32□□□□□ -0.28
PTPRF-205ENST00000414879 SRP68Q9UHB9 627 aaKnown RBP13.32□□□□□ -0.28
PTPRF-205ENST00000414879 DNAI1Q9UI46 699 aa13.32□□□□□ -0.28
PTPRF-205ENST00000414879 M0QZ92 97 aa13.32□□□□□ -0.28
PTPRF-205ENST00000414879 SCRN1Q12765 414 aa13.32□□□□□ -0.28
PTPRF-205ENST00000414879 SEPT2Q15019 361 aa13.32□□□□□ -0.28
PTPRF-205ENST00000414879 SF3B3Q15393 1217 aaKnown RBP13.32□□□□□ -0.28
PTPRF-205ENST00000414879 LIN9Q5TKA1 542 aa13.32□□□□□ -0.28
PTPRF-205ENST00000414879 TSKSQ9UJT2 592 aa13.32□□□□□ -0.28
PTPRF-205ENST00000414879 TRPC3Q13507 836 aa13.32□□□□□ -0.28
Retrieved 100 of 20,778 RNA–protein pairs in 101.7 ms